Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47085 * 2 1 4 4 C 1.52996 * 109.47138 * 119.99991 * 2 1 3 5 5 C 1.50697 * 109.47490 * 180.64157 * 4 2 1 6 6 O 1.21287 * 119.99696 * 354.45291 * 5 4 2 7 7 N 1.34777 * 120.00636 * 174.45523 * 5 4 2 8 8 C 1.47616 * 126.91374 * 359.97209 * 7 5 4 9 9 C 1.54342 * 107.04937 * 205.02498 * 8 7 5 10 10 C 1.53096 * 104.73104 * 357.71375 * 9 8 7 11 11 C 1.53643 * 111.77453 * 218.77205 * 10 9 8 12 12 C 1.55190 * 101.41282 * 272.08418 * 11 10 9 13 13 N 1.47566 * 105.00891 * 324.51747 * 12 11 10 14 14 C 1.36935 * 125.67811 * 203.83267 * 13 12 11 15 15 H 1.08003 * 119.99838 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99643 * 0.03045 * 14 13 12 17 17 N 1.31618 * 120.00490 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46842 * 89.99786 * 18 16 14 20 20 H 1.48499 * 109.46820 * 209.99631 * 18 16 14 21 21 H 1.48497 * 109.47136 * 329.99937 * 18 16 14 22 22 C 1.47416 * 108.64915 * 23.85730 * 13 12 11 23 23 C 1.48403 * 126.92024 * 179.97438 * 7 5 4 24 24 C 1.52994 * 109.47237 * 240.00059 * 2 1 3 25 25 C 1.53005 * 117.50026 * 128.62033 * 24 2 1 26 26 C 1.53001 * 60.00046 * 252.51043 * 25 24 2 27 27 H 1.08995 * 109.47183 * 304.79616 * 1 2 3 28 28 H 1.09000 * 109.47119 * 64.79803 * 1 2 3 29 29 H 1.08993 * 109.47093 * 184.79619 * 1 2 3 30 30 H 0.96700 * 114.00258 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47088 * 60.64116 * 4 2 1 32 32 H 1.09004 * 109.47129 * 300.64361 * 4 2 1 33 33 H 1.08998 * 109.91429 * 85.67486 * 8 7 5 34 34 H 1.09000 * 109.91930 * 324.38101 * 8 7 5 35 35 H 1.08995 * 110.40878 * 116.55940 * 9 8 7 36 36 H 1.09000 * 110.40570 * 238.86768 * 9 8 7 37 37 H 1.08997 * 111.03721 * 30.11746 * 11 10 9 38 38 H 1.09001 * 111.03292 * 154.05683 * 11 10 9 39 39 H 1.08998 * 110.33256 * 205.63684 * 12 11 10 40 40 H 1.08994 * 110.42128 * 83.44427 * 12 11 10 41 41 H 0.96998 * 120.00291 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.98487 * 238.53907 * 22 13 12 43 43 H 1.09002 * 109.98485 * 117.23164 * 22 13 12 44 44 H 1.08998 * 110.68689 * 260.81043 * 23 7 5 45 45 H 1.09000 * 110.68587 * 23.98869 * 23 7 5 46 46 H 1.08997 * 115.55480 * 274.33169 * 24 2 1 47 47 H 1.08999 * 117.49815 * 0.02562 * 25 24 2 48 48 H 1.09000 * 117.49743 * 145.02082 * 25 24 2 49 49 H 1.09005 * 117.49927 * 252.50886 * 26 25 24 50 50 H 1.09007 * 117.51488 * 107.48158 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7075 1.2573 6 8 4.1544 -0.2636 0.3059 7 7 4.2197 -1.1885 2.3215 8 6 3.6396 -1.7601 3.5527 9 6 4.6849 -1.5759 4.6732 10 6 5.8874 -0.9287 3.9813 11 6 7.2177 -1.4839 4.5130 12 6 7.4838 -0.5424 5.7176 13 7 6.9782 0.7766 5.2907 14 6 7.3832 1.9864 5.7883 15 1 6.9495 2.8993 5.4077 16 6 8.3512 2.0392 6.7817 17 7 8.8795 0.9266 7.2459 18 14 8.9043 3.6896 7.4600 19 1 8.0509 4.0601 8.6175 20 1 10.3198 3.5952 7.8988 21 1 8.7816 4.7254 6.4031 22 6 5.9642 0.5752 4.2399 23 6 5.6926 -1.2501 2.4915 24 6 2.0400 -0.7212 -1.2492 25 6 3.0742 0.0052 -2.1117 26 6 1.6358 -0.1495 -2.6096 27 1 -0.3633 0.5864 0.8439 28 1 -0.3633 0.4376 -0.9298 29 1 -0.3633 -1.0240 0.0859 30 1 2.9703 1.4236 -0.0004 31 1 1.6861 -1.7521 1.2435 32 1 1.6673 -0.2141 2.1392 33 1 3.4329 -2.8205 3.4082 34 1 2.7216 -1.2319 3.8106 35 1 4.2959 -0.9197 5.4517 36 1 4.9636 -2.5415 5.0953 37 1 7.1072 -2.5174 4.8411 38 1 8.0057 -1.3946 3.7651 39 1 8.5520 -0.4887 5.9276 40 1 6.9423 -0.8888 6.5978 41 1 9.5556 0.9636 7.9404 42 1 6.2628 1.0950 3.3295 43 1 4.9967 0.9446 4.5800 44 1 6.0652 -2.2486 2.2625 45 1 6.1837 -0.5026 1.8686 46 1 2.1268 -1.8044 -1.1643 47 1 3.3915 0.9968 -1.7888 48 1 3.8416 -0.6001 -2.5941 49 1 1.4569 -0.8565 -3.4197 50 1 1.0061 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041225701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = -28.175211 kcal Electronic energy + Delta-G solvation = -28839.551397 eV Core-core repulsion = 25061.361040 eV Total energy + Delta-G solvation = -3778.190357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64286 -39.44647 -37.75492 -35.66669 -35.02313 -32.88652 -32.20613 -30.46702 -29.38095 -28.87121 -27.79168 -25.59124 -24.06624 -23.12581 -22.65714 -22.22216 -20.40078 -20.07637 -19.28182 -18.69343 -17.26857 -16.93326 -16.66518 -16.17791 -15.96005 -15.03435 -14.93889 -14.65261 -14.24488 -14.12688 -13.78974 -13.59548 -13.00737 -12.89473 -12.85247 -12.62437 -12.55353 -12.32377 -12.17513 -11.99837 -11.81039 -11.52717 -11.35304 -11.32806 -11.20019 -11.13202 -10.87261 -10.80481 -10.49997 -10.31787 -10.22802 -10.05889 -9.96641 -9.92853 -9.80169 -9.60271 -9.44166 -8.68608 -8.58938 -6.83491 -5.65859 -3.06849 2.60991 2.95460 3.40114 3.45452 3.47356 3.77119 4.12771 4.34714 4.48012 4.53010 4.59168 4.70109 4.85089 4.97477 4.99083 5.02049 5.18411 5.24476 5.25173 5.34019 5.40118 5.42392 5.47974 5.54071 5.61012 5.64048 5.72240 5.75880 5.81459 5.92683 5.93270 5.96950 6.00093 6.05946 6.11406 6.20279 6.22664 6.33506 6.35983 6.53708 6.61185 6.76269 6.85091 7.49201 7.52999 7.62526 7.70548 7.84476 8.15913 8.35149 9.22013 9.82523 10.47634 11.38312 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002959 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.992711 B = 9461.842030 C =10015.599936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.178 3.822 3 O -0.562 6.562 4 C -0.164 4.164 5 C 0.532 3.468 6 O -0.539 6.539 7 N -0.617 5.617 8 C 0.101 3.899 9 C -0.116 4.116 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.155 3.845 13 N -0.604 5.604 14 C -0.221 4.221 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.155 3.845 23 C 0.121 3.879 24 C -0.172 4.172 25 C -0.138 4.138 26 C -0.185 4.185 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.387 0.613 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -9.326 -12.942 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.136 3.864 3 O -0.373 6.373 4 C -0.204 4.204 5 C 0.322 3.678 6 O -0.417 6.417 7 N -0.351 5.351 8 C -0.022 4.022 9 C -0.154 4.154 10 C -0.084 4.084 11 C -0.170 4.170 12 C 0.030 3.970 13 N -0.330 5.330 14 C -0.349 4.349 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.029 3.971 23 C -0.001 4.001 24 C -0.191 4.191 25 C -0.175 4.175 26 C -0.222 4.222 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.240 0.760 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.523 -8.825 -13.375 22.310 hybrid contribution 0.825 0.466 0.629 1.137 sum -14.698 -8.359 -12.746 21.175 Atomic orbital electron populations 1.21726 0.92186 1.02208 1.03154 1.20302 0.93834 0.81976 0.90241 1.86421 1.28974 1.25258 1.96678 1.22447 0.92817 1.03605 1.01539 1.20200 0.89490 0.77003 0.81150 1.90660 1.70232 1.46998 1.33828 1.48977 1.08215 1.60926 1.16939 1.22249 0.97551 0.97940 0.84474 1.22369 0.94443 1.01694 0.96864 1.21623 0.95971 0.97679 0.93095 1.22872 0.94538 0.99034 1.00589 1.21954 1.02522 0.82128 0.90382 1.44642 1.43482 1.02812 1.42112 1.19083 1.16818 0.83839 1.15185 0.90583 1.24768 0.99433 0.97298 0.99165 1.69794 1.31468 1.24401 1.31557 0.86083 0.77782 0.82858 0.78865 1.21666 1.21649 1.20682 1.21070 0.92690 0.90934 0.92383 1.22412 0.79772 1.01565 0.96357 1.22801 1.05590 0.98937 0.91755 1.22674 0.91204 1.02143 1.01513 1.23003 0.99651 1.03015 0.96501 0.91761 0.91483 0.91225 0.76024 0.88260 0.88248 0.91654 0.91011 0.90052 0.90443 0.92002 0.91859 0.87754 0.96978 0.93768 0.95849 0.96213 0.91233 0.89655 0.88327 0.88403 0.89519 0.89498 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.75 37.16 0.33 -0.83 16 2 C 0.18 1.88 0.92 -90.62 -0.08 1.79 16 3 O -0.56 -7.38 12.10 -52.18 -0.63 -8.01 16 4 C -0.16 -1.62 4.13 -27.89 -0.12 -1.74 16 5 C 0.53 6.90 7.38 -10.99 -0.08 6.82 16 6 O -0.54 -8.18 11.60 -11.40 -0.13 -8.32 16 7 N -0.62 -7.96 3.31 -170.02 -0.56 -8.52 16 8 C 0.10 1.08 6.77 -2.73 -0.02 1.06 16 9 C -0.12 -1.54 6.04 -25.98 -0.16 -1.70 16 10 C -0.08 -1.34 0.68 -153.90 -0.11 -1.44 16 11 C -0.13 -2.33 6.05 -25.24 -0.15 -2.48 16 12 C 0.15 3.63 5.84 -2.30 -0.01 3.62 16 13 N -0.60 -15.32 3.41 -170.41 -0.58 -15.90 16 14 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 15 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -26.72 10.10 55.49 0.56 -26.16 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.16 3.23 6.46 -3.65 -0.02 3.20 16 23 C 0.12 1.75 6.04 -2.66 -0.02 1.74 16 24 C -0.17 -1.82 4.03 -90.62 -0.37 -2.18 16 25 C -0.14 -1.59 7.94 -26.73 -0.21 -1.80 16 26 C -0.18 -1.81 9.61 -26.73 -0.26 -2.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.58 7.13 -51.93 -0.37 0.21 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.39 5.33 5.33 45.56 0.24 5.57 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 7.38 -51.93 -0.38 0.29 16 35 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 36 H 0.08 0.93 7.56 -51.93 -0.39 0.54 16 37 H 0.06 0.94 7.63 -51.93 -0.40 0.54 16 38 H 0.06 1.12 8.08 -51.93 -0.42 0.71 16 39 H 0.10 2.79 5.89 -51.93 -0.31 2.49 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 43 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 44 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 45 H 0.09 1.39 7.40 -51.93 -0.38 1.01 16 46 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 47 H 0.10 1.23 6.29 -51.93 -0.33 0.91 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -30.95 377.83 -10.26 -41.20 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.06 Total: 5.63 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.52 Total: -2.75 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.58 Total: -50.58 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.76 Total: -16.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.95 -10.26 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041225701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.028 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds