Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47085 * 2 1 4 4 C 1.52996 * 109.47138 * 119.99991 * 2 1 3 5 5 C 1.50697 * 109.47490 * 180.64157 * 4 2 1 6 6 O 1.21287 * 119.99696 * 354.45291 * 5 4 2 7 7 N 1.34777 * 120.00636 * 174.45523 * 5 4 2 8 8 C 1.47616 * 126.91374 * 359.97209 * 7 5 4 9 9 C 1.54342 * 107.04937 * 205.02498 * 8 7 5 10 10 C 1.53096 * 104.73104 * 357.71375 * 9 8 7 11 11 C 1.53643 * 111.77453 * 218.77205 * 10 9 8 12 12 C 1.55190 * 101.41282 * 272.08418 * 11 10 9 13 13 N 1.47566 * 105.00891 * 324.51747 * 12 11 10 14 14 C 1.36935 * 125.67811 * 203.83267 * 13 12 11 15 15 H 1.08003 * 119.99838 * 180.02562 * 14 13 12 16 16 C 1.38809 * 119.99643 * 0.03045 * 14 13 12 17 17 N 1.31618 * 120.00490 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46842 * 89.99786 * 18 16 14 20 20 H 1.48499 * 109.46820 * 209.99631 * 18 16 14 21 21 H 1.48497 * 109.47136 * 329.99937 * 18 16 14 22 22 C 1.47416 * 108.64915 * 23.85730 * 13 12 11 23 23 C 1.48403 * 126.92024 * 179.97438 * 7 5 4 24 24 C 1.52994 * 109.47237 * 240.00059 * 2 1 3 25 25 C 1.53005 * 117.50026 * 128.62033 * 24 2 1 26 26 C 1.53001 * 60.00046 * 252.51043 * 25 24 2 27 27 H 1.08995 * 109.47183 * 304.79616 * 1 2 3 28 28 H 1.09000 * 109.47119 * 64.79803 * 1 2 3 29 29 H 1.08993 * 109.47093 * 184.79619 * 1 2 3 30 30 H 0.96700 * 114.00258 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47088 * 60.64116 * 4 2 1 32 32 H 1.09004 * 109.47129 * 300.64361 * 4 2 1 33 33 H 1.08998 * 109.91429 * 85.67486 * 8 7 5 34 34 H 1.09000 * 109.91930 * 324.38101 * 8 7 5 35 35 H 1.08995 * 110.40878 * 116.55940 * 9 8 7 36 36 H 1.09000 * 110.40570 * 238.86768 * 9 8 7 37 37 H 1.08997 * 111.03721 * 30.11746 * 11 10 9 38 38 H 1.09001 * 111.03292 * 154.05683 * 11 10 9 39 39 H 1.08998 * 110.33256 * 205.63684 * 12 11 10 40 40 H 1.08994 * 110.42128 * 83.44427 * 12 11 10 41 41 H 0.96998 * 120.00291 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.98487 * 238.53907 * 22 13 12 43 43 H 1.09002 * 109.98485 * 117.23164 * 22 13 12 44 44 H 1.08998 * 110.68689 * 260.81043 * 23 7 5 45 45 H 1.09000 * 110.68587 * 23.98869 * 23 7 5 46 46 H 1.08997 * 115.55480 * 274.33169 * 24 2 1 47 47 H 1.08999 * 117.49815 * 0.02562 * 25 24 2 48 48 H 1.09000 * 117.49743 * 145.02082 * 25 24 2 49 49 H 1.09005 * 117.49927 * 252.50886 * 26 25 24 50 50 H 1.09007 * 117.51488 * 107.48158 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7075 1.2573 6 8 4.1544 -0.2636 0.3059 7 7 4.2197 -1.1885 2.3215 8 6 3.6396 -1.7601 3.5527 9 6 4.6849 -1.5759 4.6732 10 6 5.8874 -0.9287 3.9813 11 6 7.2177 -1.4839 4.5130 12 6 7.4838 -0.5424 5.7176 13 7 6.9782 0.7766 5.2907 14 6 7.3832 1.9864 5.7883 15 1 6.9495 2.8993 5.4077 16 6 8.3512 2.0392 6.7817 17 7 8.8795 0.9266 7.2459 18 14 8.9043 3.6896 7.4600 19 1 8.0509 4.0601 8.6175 20 1 10.3198 3.5952 7.8988 21 1 8.7816 4.7254 6.4031 22 6 5.9642 0.5752 4.2399 23 6 5.6926 -1.2501 2.4915 24 6 2.0400 -0.7212 -1.2492 25 6 3.0742 0.0052 -2.1117 26 6 1.6358 -0.1495 -2.6096 27 1 -0.3633 0.5864 0.8439 28 1 -0.3633 0.4376 -0.9298 29 1 -0.3633 -1.0240 0.0859 30 1 2.9703 1.4236 -0.0004 31 1 1.6861 -1.7521 1.2435 32 1 1.6673 -0.2141 2.1392 33 1 3.4329 -2.8205 3.4082 34 1 2.7216 -1.2319 3.8106 35 1 4.2959 -0.9197 5.4517 36 1 4.9636 -2.5415 5.0953 37 1 7.1072 -2.5174 4.8411 38 1 8.0057 -1.3946 3.7651 39 1 8.5520 -0.4887 5.9276 40 1 6.9423 -0.8888 6.5978 41 1 9.5556 0.9636 7.9404 42 1 6.2628 1.0950 3.3295 43 1 4.9967 0.9446 4.5800 44 1 6.0652 -2.2486 2.2625 45 1 6.1837 -0.5026 1.8686 46 1 2.1268 -1.8044 -1.1643 47 1 3.3915 0.9968 -1.7888 48 1 3.8416 -0.6001 -2.5941 49 1 1.4569 -0.8565 -3.4197 50 1 1.0061 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041225701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = -46.751040 kcal Electronic energy + Delta-G solvation = -28840.356906 eV Core-core repulsion = 25061.361040 eV Total energy + Delta-G solvation = -3778.995865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66120 -40.57332 -38.86733 -37.09996 -35.90147 -34.54489 -33.21863 -32.00428 -30.65035 -30.14375 -28.94373 -27.30591 -25.41122 -24.07947 -23.82547 -23.05666 -22.20900 -20.96803 -20.35416 -19.95709 -18.86370 -18.15628 -17.68496 -17.15777 -16.98717 -16.74984 -15.98173 -15.88998 -15.70540 -15.57272 -15.02319 -14.62964 -14.27969 -14.12292 -13.95764 -13.70673 -13.61998 -13.30645 -13.20662 -13.10089 -13.04246 -12.95697 -12.82088 -12.72988 -12.58588 -12.36080 -12.20377 -12.03794 -11.95645 -11.81287 -11.51556 -11.41795 -11.32765 -11.26856 -11.15109 -10.76628 -10.74741 -10.45245 -9.62955 -8.89906 -7.79720 -5.23446 1.44179 1.45615 1.54593 1.65534 1.99494 2.47164 2.96361 3.26852 3.30232 3.40311 3.56651 3.67346 3.71895 3.81506 3.84109 3.90340 4.13446 4.21172 4.25795 4.32018 4.37776 4.43830 4.51580 4.57694 4.65646 4.70274 4.73660 4.75935 4.81545 4.84048 4.87760 4.90911 4.96875 4.99703 5.07593 5.10346 5.16669 5.21920 5.31571 5.32977 5.35599 5.37872 5.39816 5.44953 5.67130 5.82680 6.30461 6.57386 6.72838 7.10076 7.19309 7.76488 8.40347 9.21747 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002959 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.992711 B = 9461.842030 C =10015.599936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 O -0.579 6.579 4 C -0.155 4.155 5 C 0.524 3.476 6 O -0.568 6.568 7 N -0.620 5.620 8 C 0.106 3.894 9 C -0.113 4.113 10 C -0.074 4.074 11 C -0.115 4.115 12 C 0.157 3.843 13 N -0.626 5.626 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.063 4.063 17 N -0.945 5.945 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.274 1.274 22 C 0.156 3.844 23 C 0.129 3.871 24 C -0.167 4.167 25 C -0.157 4.157 26 C -0.171 4.171 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.379 0.621 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.067 0.933 40 H -0.006 1.006 41 H 0.248 0.752 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 -11.312 -13.388 24.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.127 3.873 3 O -0.390 6.390 4 C -0.195 4.195 5 C 0.315 3.685 6 O -0.448 6.448 7 N -0.354 5.354 8 C -0.016 4.016 9 C -0.151 4.151 10 C -0.075 4.075 11 C -0.154 4.154 12 C 0.032 3.968 13 N -0.353 5.353 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.199 1.199 22 C 0.031 3.969 23 C 0.006 3.994 24 C -0.186 4.186 25 C -0.194 4.194 26 C -0.208 4.208 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.232 0.768 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.012 0.988 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.834 -10.824 -13.829 25.029 hybrid contribution 1.554 1.135 0.759 2.069 sum -16.281 -9.689 -13.069 23.016 Atomic orbital electron populations 1.21758 0.90350 1.03893 1.02992 1.20622 0.95116 0.80910 0.90643 1.86416 1.28389 1.27345 1.96819 1.22464 0.90109 1.05537 1.01381 1.20834 0.90795 0.76227 0.80669 1.90665 1.71077 1.48014 1.35051 1.49055 1.07404 1.61120 1.17784 1.22391 0.96875 1.00167 0.82194 1.22359 0.93585 1.01908 0.97237 1.21490 0.96702 0.94193 0.95147 1.22723 0.95298 0.99507 0.97845 1.21752 0.99814 0.82835 0.92365 1.44951 1.44645 1.02783 1.42877 1.19389 1.17154 0.85038 1.15590 0.91037 1.25572 0.99646 1.00679 0.99649 1.70044 1.31674 1.26063 1.31719 0.85096 0.77042 0.79105 0.78191 1.21168 1.21612 1.19922 1.21164 0.91045 0.94502 0.90221 1.22202 0.81246 1.01902 0.94067 1.22858 1.04497 0.99231 0.91987 1.22574 0.92156 1.01467 1.03236 1.23027 0.97849 1.03095 0.96798 0.91784 0.91856 0.88587 0.76849 0.84998 0.87387 0.88102 0.89287 0.91894 0.88226 0.88399 0.92137 0.91452 0.98815 0.94220 0.97698 0.96738 0.88861 0.92351 0.87395 0.90325 0.90071 0.87845 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.75 71.98 0.63 -1.25 16 2 C 0.17 3.21 0.92 -10.80 -0.01 3.20 16 3 O -0.58 -15.08 12.10 -132.77 -1.61 -16.69 16 4 C -0.16 -2.57 4.13 29.85 0.12 -2.45 16 5 C 0.52 12.59 7.38 87.66 0.65 13.24 16 6 O -0.57 -17.11 11.60 13.15 0.15 -16.95 16 7 N -0.62 -14.41 3.31 -810.19 -2.68 -17.09 16 8 C 0.11 1.82 6.77 86.62 0.59 2.41 16 9 C -0.11 -2.69 6.04 31.08 0.19 -2.50 16 10 C -0.07 -2.32 0.68 -51.78 -0.04 -2.35 16 11 C -0.11 -3.96 6.05 31.56 0.19 -3.77 16 12 C 0.16 7.56 5.84 86.93 0.51 8.06 16 13 N -0.63 -32.82 3.41 -693.04 -2.36 -35.19 16 14 C -0.24 -14.03 10.28 84.03 0.86 -13.17 16 15 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 17 N -0.95 -56.38 10.10 21.65 0.22 -56.16 16 18 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.16 6.64 6.46 86.14 0.56 7.19 16 23 C 0.13 3.52 6.04 86.23 0.52 4.04 16 24 C -0.17 -3.22 4.03 -10.79 -0.04 -3.27 16 25 C -0.16 -3.62 7.94 30.60 0.24 -3.38 16 26 C -0.17 -3.11 9.61 30.60 0.29 -2.81 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.95 7.13 -2.39 -0.02 0.93 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.38 10.85 5.33 -74.06 -0.39 10.46 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 1.65 7.66 -2.38 -0.02 1.63 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.28 7.38 -2.39 -0.02 1.26 16 35 H 0.06 1.75 7.61 -2.39 -0.02 1.74 16 36 H 0.10 1.97 7.56 -2.39 -0.02 1.96 16 37 H 0.10 2.68 7.63 -2.39 -0.02 2.67 16 38 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 39 H 0.07 3.75 5.89 -2.39 -0.01 3.74 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.01 0.23 7.57 -2.39 -0.02 0.21 16 43 H 0.01 0.63 7.60 -2.39 -0.02 0.62 16 44 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 45 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 46 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 47 H 0.08 2.10 6.29 -2.39 -0.02 2.08 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.09 1.70 7.58 -2.38 -0.02 1.69 16 Total: -1.00 -71.15 377.83 2.01 -69.14 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.53 Total: 24.40 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.73 Total: 0.05 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.83 Total: -108.44 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.45 Total: -33.64 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -71.15 2.01 -69.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041225701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.394 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds