Wall clock time and date at job start Fri Apr 10 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99575 * 2 1 4 4 H 1.48506 * 109.46949 * 269.99296 * 3 2 1 5 5 H 1.48507 * 109.47164 * 149.99866 * 3 2 1 6 6 H 1.48492 * 109.47394 * 29.99408 * 3 2 1 7 7 C 1.38816 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99909 * 336.77558 * 7 2 1 9 9 N 1.36935 * 120.00086 * 156.78063 * 7 2 1 10 10 C 1.47424 * 125.64822 * 344.04035 * 9 7 2 11 11 C 1.54903 * 104.83619 * 204.09837 * 10 9 7 12 12 H 1.09005 * 111.00788 * 81.10225 * 11 10 9 13 13 O 1.42897 * 111.00855 * 204.91880 * 11 10 9 14 14 C 1.55162 * 101.58044 * 322.99377 * 11 10 9 15 15 H 1.08998 * 110.72029 * 277.13729 * 14 11 10 16 16 N 1.46501 * 110.72517 * 154.04177 * 14 11 10 17 17 C 1.34770 * 120.00262 * 155.00047 * 16 14 11 18 18 O 1.21281 * 120.00237 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00062 * 180.02562 * 17 16 14 20 20 C 1.52992 * 109.47367 * 179.97438 * 19 17 16 21 21 C 1.53787 * 113.61545 * 277.49608 * 20 19 17 22 22 C 1.53780 * 87.08040 * 220.01784 * 21 20 19 23 23 C 1.53778 * 113.61863 * 179.97438 * 20 19 17 24 24 C 1.53008 * 109.46650 * 299.99429 * 19 17 16 25 25 C 1.53781 * 113.60946 * 157.49812 * 24 19 17 26 26 C 1.53781 * 87.08016 * 220.01882 * 25 24 19 27 27 C 1.53781 * 87.08218 * 25.43353 * 26 25 24 28 28 C 1.47014 * 125.65047 * 163.74331 * 9 7 2 29 29 H 0.97001 * 119.99135 * 184.52349 * 1 2 3 30 30 H 1.09007 * 110.36977 * 322.93754 * 10 9 7 31 31 H 1.09004 * 110.36877 * 85.25644 * 10 9 7 32 32 H 0.96699 * 113.99890 * 298.54590 * 13 11 10 33 33 H 0.97003 * 119.99607 * 335.00422 * 16 14 11 34 34 H 1.08992 * 109.47356 * 59.99201 * 19 17 16 35 35 H 1.09003 * 112.85228 * 48.79531 * 20 19 17 36 36 H 1.09002 * 113.60875 * 334.56189 * 21 20 19 37 37 H 1.08999 * 113.61405 * 105.46543 * 21 20 19 38 38 H 1.09002 * 113.61213 * 270.87744 * 22 21 20 39 39 H 1.09005 * 113.69334 * 139.98973 * 22 21 20 40 40 H 1.08996 * 113.61457 * 254.52937 * 23 20 19 41 41 H 1.09002 * 113.61104 * 25.43457 * 23 20 19 42 42 H 1.08990 * 112.85073 * 288.80354 * 24 19 17 43 43 H 1.08995 * 113.62176 * 334.56758 * 25 24 19 44 44 H 1.09003 * 113.61208 * 105.47839 * 25 24 19 45 45 H 1.09001 * 113.61617 * 270.88616 * 26 25 24 46 46 H 1.08996 * 113.69558 * 139.99370 * 26 25 24 47 47 H 1.08998 * 113.62141 * 220.01929 * 27 26 25 48 48 H 1.09001 * 113.61245 * 89.11020 * 27 26 25 49 49 H 1.09008 * 109.88097 * 298.38602 * 28 9 7 50 50 H 1.09002 * 109.88779 * 59.54875 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5477 1.4404 0.7001 6 1 1.4475 2.6528 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.5361 -2.0994 0.3698 9 7 3.2965 -1.2502 -0.4670 10 6 3.9506 -0.2171 -1.2906 11 6 5.0767 -0.9661 -2.0457 12 1 4.6827 -1.4868 -2.9186 13 8 6.1271 -0.0715 -2.4175 14 6 5.5588 -1.9724 -0.9676 15 1 6.2661 -1.4988 -0.2868 16 7 6.1565 -3.1550 -1.5925 17 6 7.0613 -3.8901 -0.9161 18 8 7.3811 -3.5723 0.2098 19 6 7.6765 -5.1062 -1.5593 20 6 8.6633 -5.7538 -0.5859 21 6 10.0515 -5.0919 -0.5847 22 6 10.6401 -6.5087 -0.4794 23 6 9.3490 -7.0100 -1.1484 24 6 6.5755 -6.1084 -1.9121 25 6 6.9736 -7.0952 -3.0223 26 6 5.5464 -6.9316 -3.5711 27 6 5.5271 -5.5528 -2.8904 28 6 4.2558 -2.3378 -0.2256 29 1 -0.4849 -0.8375 0.0663 30 1 3.2396 0.2110 -1.9973 31 1 4.3725 0.5626 -0.6565 32 1 5.8484 0.6356 -3.0153 33 1 5.9010 -3.4090 -2.4932 34 1 8.2028 -4.8104 -2.4666 35 1 8.2444 -5.8944 0.4106 36 1 10.2949 -4.5864 -1.5192 37 1 10.2400 -4.4744 0.2935 38 1 10.7629 -6.8554 0.5467 39 1 11.5331 -6.6583 -1.0864 40 1 8.9706 -7.9405 -0.7252 41 1 9.4003 -7.0290 -2.2370 42 1 6.1426 -6.5881 -1.0344 43 1 7.7449 -6.7126 -3.6907 44 1 7.1885 -8.0996 -2.6573 45 1 4.8321 -7.6376 -3.1475 46 1 5.4983 -6.8822 -4.6589 47 1 4.5744 -5.3118 -2.4189 48 1 5.9030 -4.7484 -3.5227 49 1 4.4492 -2.4312 0.8431 50 1 3.8595 -3.2752 -0.6160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077575053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:50 Heat of formation + Delta-G solvation = -22.028416 kcal Electronic energy + Delta-G solvation = -28960.574012 eV Core-core repulsion = 25182.650200 eV Total energy + Delta-G solvation = -3777.923812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85732 -39.01570 -38.08538 -37.75407 -35.35832 -34.08677 -32.09691 -31.14965 -28.61685 -27.66240 -26.29210 -25.56999 -24.74771 -24.11581 -22.90132 -21.26913 -20.44452 -20.08069 -19.82117 -19.08900 -17.65116 -17.36569 -16.92100 -16.28028 -15.80863 -15.64269 -15.21938 -14.81294 -14.54319 -14.29727 -13.92887 -13.70332 -13.65172 -13.25112 -12.80574 -12.75860 -12.62258 -12.49999 -12.36491 -12.28500 -11.98297 -11.92048 -11.63603 -11.50361 -11.27125 -11.12276 -10.77142 -10.72529 -10.61369 -10.55545 -10.40273 -10.19680 -10.03244 -9.91801 -9.60101 -9.37200 -9.27832 -8.86313 -8.53982 -7.14880 -6.36858 -3.29596 2.80042 3.26380 3.35300 3.51225 3.64497 4.19400 4.22749 4.32807 4.38794 4.53602 4.54066 4.57412 4.64598 4.71886 4.79741 4.91908 5.06451 5.09408 5.22830 5.28183 5.32401 5.34601 5.36256 5.45391 5.46140 5.50056 5.58507 5.58802 5.61914 5.70187 5.74227 5.79215 5.81429 5.85657 5.87999 5.98148 5.99984 6.15501 6.23535 6.33319 6.37314 6.41890 6.47156 6.61308 6.81014 7.62924 7.68349 7.79603 8.28636 8.41568 8.97096 9.50487 10.17303 11.10068 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.003421 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.334913 B = 8182.438075 C = 8776.022887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.080 3.920 11 C 0.082 3.918 12 H 0.070 0.930 13 O -0.561 6.561 14 C 0.140 3.860 15 H 0.103 0.897 16 N -0.717 5.717 17 C 0.519 3.481 18 O -0.537 6.537 19 C -0.087 4.087 20 C -0.085 4.085 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.134 4.134 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.148 4.148 28 C 0.129 3.871 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.378 0.622 33 H 0.398 0.602 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.038 0.962 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.315 -13.679 -9.500 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.895 3.105 4 H -0.222 1.222 5 H -0.212 1.212 6 H -0.224 1.224 7 C -0.455 4.455 8 H 0.094 0.906 9 N -0.331 5.331 10 C -0.046 4.046 11 C 0.022 3.978 12 H 0.087 0.913 13 O -0.366 6.366 14 C 0.035 3.965 15 H 0.121 0.879 16 N -0.371 5.371 17 C 0.306 3.694 18 O -0.414 6.414 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.171 4.171 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.117 4.117 25 C -0.167 4.167 26 C -0.178 4.178 27 C -0.186 4.186 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.225 0.775 33 H 0.236 0.764 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.604 -12.216 -8.308 23.756 hybrid contribution -0.396 -1.308 -0.653 1.515 sum 18.208 -13.524 -8.961 24.388 Atomic orbital electron populations 1.70912 1.05785 1.29901 1.49358 1.25952 0.96460 1.00885 0.98568 0.83857 0.74454 0.75938 0.76261 1.22201 1.21171 1.22425 1.20056 0.86079 0.96500 1.42867 0.90561 1.44606 1.10475 1.19327 1.58688 1.22671 0.93931 0.93523 0.94504 1.23282 0.87620 0.90866 0.96037 0.91258 1.86472 1.36412 1.43981 1.69754 1.21962 0.95801 0.84366 0.94384 0.87878 1.46275 1.43381 1.28354 1.19080 1.20559 0.78634 0.84062 0.86194 1.90691 1.61377 1.70529 1.18756 1.21407 0.96657 0.93107 0.99635 1.22309 0.93457 0.95610 0.99042 1.22902 0.95644 0.96255 1.02270 1.22824 0.97257 0.97143 1.00942 1.22995 0.96243 0.97411 1.00439 1.22504 0.95143 0.96346 0.97741 1.22987 0.96969 0.99430 0.97337 1.22792 0.97331 0.97361 1.00314 1.23123 1.00015 0.97174 0.98264 1.21702 0.87531 0.92842 0.97720 0.92634 0.91701 0.93918 0.77470 0.76441 0.88785 0.88459 0.90569 0.91190 0.90370 0.91736 0.91614 0.89993 0.88558 0.90058 0.91263 0.90087 0.91373 0.90491 0.90136 0.94392 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.52 13.70 55.49 0.76 -27.76 16 2 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 3 Si 1.06 26.51 24.70 -169.99 -4.20 22.31 16 4 H -0.29 -6.77 6.70 56.52 0.38 -6.39 16 5 H -0.28 -6.91 6.25 56.52 0.35 -6.56 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.33 -9.36 10.44 -15.06 -0.16 -9.52 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 9 N -0.60 -14.77 3.23 -170.07 -0.55 -15.32 16 10 C 0.08 1.70 4.44 -2.53 -0.01 1.69 16 11 C 0.08 1.40 4.06 -24.58 -0.10 1.30 16 12 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 13 O -0.56 -8.53 13.47 -35.23 -0.47 -9.00 16 14 C 0.14 2.52 3.04 -66.09 -0.20 2.32 16 15 H 0.10 2.07 7.55 -51.93 -0.39 1.68 16 16 N -0.72 -10.33 4.63 -52.02 -0.24 -10.57 16 17 C 0.52 7.62 7.13 -10.99 -0.08 7.54 16 18 O -0.54 -10.01 15.49 5.56 0.09 -9.92 16 19 C -0.09 -0.90 1.84 -91.77 -0.17 -1.07 16 20 C -0.09 -0.88 2.54 -89.81 -0.23 -1.11 16 21 C -0.13 -1.35 7.60 -25.92 -0.20 -1.55 16 22 C -0.14 -1.18 8.08 -25.90 -0.21 -1.39 16 23 C -0.13 -1.05 6.33 -25.90 -0.16 -1.21 16 24 C -0.10 -0.90 2.96 -89.80 -0.27 -1.16 16 25 C -0.13 -0.91 5.69 -25.92 -0.15 -1.06 16 26 C -0.14 -1.07 8.08 -25.92 -0.21 -1.28 16 27 C -0.15 -1.34 5.66 -25.92 -0.15 -1.49 16 28 C 0.13 2.73 7.01 -3.06 -0.02 2.71 16 29 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 30 H 0.06 1.41 6.52 -51.93 -0.34 1.07 16 31 H 0.04 0.96 5.46 -51.93 -0.28 0.67 16 32 H 0.38 4.08 9.11 45.56 0.42 4.49 16 33 H 0.40 4.75 5.24 -40.82 -0.21 4.54 16 34 H 0.09 0.86 7.74 -51.93 -0.40 0.46 16 35 H 0.10 1.19 7.86 -51.93 -0.41 0.78 16 36 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.57 6.86 -51.93 -0.36 0.21 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.52 7.66 -51.93 -0.40 0.12 16 44 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.66 6.51 -51.93 -0.34 0.33 16 49 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 50 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -33.75 378.30 -9.15 -42.90 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.83 Total: 7.56 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.40 Total: -5.90 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.03 Total: -53.65 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.39 Total: -18.92 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -4.20 Total: 22.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.75 -9.15 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077575053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.876 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds