Wall clock time and date at job start Fri Apr 10 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99575 * 2 1 4 4 H 1.48506 * 109.46949 * 269.99296 * 3 2 1 5 5 H 1.48507 * 109.47164 * 149.99866 * 3 2 1 6 6 H 1.48492 * 109.47394 * 29.99408 * 3 2 1 7 7 C 1.38816 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99909 * 336.77558 * 7 2 1 9 9 N 1.36935 * 120.00086 * 156.78063 * 7 2 1 10 10 C 1.47424 * 125.64822 * 344.04035 * 9 7 2 11 11 C 1.54903 * 104.83619 * 204.09837 * 10 9 7 12 12 H 1.09005 * 111.00788 * 81.10225 * 11 10 9 13 13 O 1.42897 * 111.00855 * 204.91880 * 11 10 9 14 14 C 1.55162 * 101.58044 * 322.99377 * 11 10 9 15 15 H 1.08998 * 110.72029 * 277.13729 * 14 11 10 16 16 N 1.46501 * 110.72517 * 154.04177 * 14 11 10 17 17 C 1.34770 * 120.00262 * 155.00047 * 16 14 11 18 18 O 1.21281 * 120.00237 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00062 * 180.02562 * 17 16 14 20 20 C 1.52992 * 109.47367 * 179.97438 * 19 17 16 21 21 C 1.53787 * 113.61545 * 277.49608 * 20 19 17 22 22 C 1.53780 * 87.08040 * 220.01784 * 21 20 19 23 23 C 1.53778 * 113.61863 * 179.97438 * 20 19 17 24 24 C 1.53008 * 109.46650 * 299.99429 * 19 17 16 25 25 C 1.53781 * 113.60946 * 157.49812 * 24 19 17 26 26 C 1.53781 * 87.08016 * 220.01882 * 25 24 19 27 27 C 1.53781 * 87.08218 * 25.43353 * 26 25 24 28 28 C 1.47014 * 125.65047 * 163.74331 * 9 7 2 29 29 H 0.97001 * 119.99135 * 184.52349 * 1 2 3 30 30 H 1.09007 * 110.36977 * 322.93754 * 10 9 7 31 31 H 1.09004 * 110.36877 * 85.25644 * 10 9 7 32 32 H 0.96699 * 113.99890 * 298.54590 * 13 11 10 33 33 H 0.97003 * 119.99607 * 335.00422 * 16 14 11 34 34 H 1.08992 * 109.47356 * 59.99201 * 19 17 16 35 35 H 1.09003 * 112.85228 * 48.79531 * 20 19 17 36 36 H 1.09002 * 113.60875 * 334.56189 * 21 20 19 37 37 H 1.08999 * 113.61405 * 105.46543 * 21 20 19 38 38 H 1.09002 * 113.61213 * 270.87744 * 22 21 20 39 39 H 1.09005 * 113.69334 * 139.98973 * 22 21 20 40 40 H 1.08996 * 113.61457 * 254.52937 * 23 20 19 41 41 H 1.09002 * 113.61104 * 25.43457 * 23 20 19 42 42 H 1.08990 * 112.85073 * 288.80354 * 24 19 17 43 43 H 1.08995 * 113.62176 * 334.56758 * 25 24 19 44 44 H 1.09003 * 113.61208 * 105.47839 * 25 24 19 45 45 H 1.09001 * 113.61617 * 270.88616 * 26 25 24 46 46 H 1.08996 * 113.69558 * 139.99370 * 26 25 24 47 47 H 1.08998 * 113.62141 * 220.01929 * 27 26 25 48 48 H 1.09001 * 113.61245 * 89.11020 * 27 26 25 49 49 H 1.09008 * 109.88097 * 298.38602 * 28 9 7 50 50 H 1.09002 * 109.88779 * 59.54875 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5477 1.4404 0.7001 6 1 1.4475 2.6528 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.5361 -2.0994 0.3698 9 7 3.2965 -1.2502 -0.4670 10 6 3.9506 -0.2171 -1.2906 11 6 5.0767 -0.9661 -2.0457 12 1 4.6827 -1.4868 -2.9186 13 8 6.1271 -0.0715 -2.4175 14 6 5.5588 -1.9724 -0.9676 15 1 6.2661 -1.4988 -0.2868 16 7 6.1565 -3.1550 -1.5925 17 6 7.0613 -3.8901 -0.9161 18 8 7.3811 -3.5723 0.2098 19 6 7.6765 -5.1062 -1.5593 20 6 8.6633 -5.7538 -0.5859 21 6 10.0515 -5.0919 -0.5847 22 6 10.6401 -6.5087 -0.4794 23 6 9.3490 -7.0100 -1.1484 24 6 6.5755 -6.1084 -1.9121 25 6 6.9736 -7.0952 -3.0223 26 6 5.5464 -6.9316 -3.5711 27 6 5.5271 -5.5528 -2.8904 28 6 4.2558 -2.3378 -0.2256 29 1 -0.4849 -0.8375 0.0663 30 1 3.2396 0.2110 -1.9973 31 1 4.3725 0.5626 -0.6565 32 1 5.8484 0.6356 -3.0153 33 1 5.9010 -3.4090 -2.4932 34 1 8.2028 -4.8104 -2.4666 35 1 8.2444 -5.8944 0.4106 36 1 10.2949 -4.5864 -1.5192 37 1 10.2400 -4.4744 0.2935 38 1 10.7629 -6.8554 0.5467 39 1 11.5331 -6.6583 -1.0864 40 1 8.9706 -7.9405 -0.7252 41 1 9.4003 -7.0290 -2.2370 42 1 6.1426 -6.5881 -1.0344 43 1 7.7449 -6.7126 -3.6907 44 1 7.1885 -8.0996 -2.6573 45 1 4.8321 -7.6376 -3.1475 46 1 5.4983 -6.8822 -4.6589 47 1 4.5744 -5.3118 -2.4189 48 1 5.9030 -4.7484 -3.5227 49 1 4.4492 -2.4312 0.8431 50 1 3.8595 -3.2752 -0.6160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077575053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:49 Heat of formation + Delta-G solvation = -46.712471 kcal Electronic energy + Delta-G solvation = -28961.644393 eV Core-core repulsion = 25182.650200 eV Total energy + Delta-G solvation = -3778.994193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84540 -40.29933 -39.06841 -38.73795 -36.85590 -35.59426 -34.06159 -32.15782 -30.26046 -29.28867 -27.02236 -26.29824 -25.84922 -25.40161 -23.95825 -22.92965 -21.88242 -21.24912 -20.71726 -19.82160 -19.69356 -18.65455 -18.12163 -17.67874 -16.68991 -16.48223 -16.37738 -16.10996 -15.91973 -15.57534 -15.44601 -15.16017 -14.96169 -14.59331 -14.39630 -14.10069 -13.57828 -13.44569 -13.38613 -13.28329 -13.15355 -13.02621 -12.93537 -12.64616 -12.56501 -12.32596 -12.03737 -11.86547 -11.69159 -11.45977 -11.42467 -11.33118 -11.26005 -11.14693 -11.11165 -10.70589 -10.66023 -10.54987 -10.16759 -9.25701 -8.68373 -5.55967 1.35155 1.51967 1.62157 1.67508 2.05933 2.45637 2.80038 3.07692 3.35693 3.39409 3.54389 3.63180 3.67250 3.81058 3.85554 3.88603 3.93406 4.01867 4.03346 4.10718 4.18410 4.27531 4.34824 4.39139 4.54367 4.59641 4.63585 4.74413 4.82068 4.86345 4.88089 4.89449 4.91076 4.93321 4.97102 5.06513 5.12447 5.14069 5.19379 5.22262 5.34556 5.38849 5.44987 5.51362 5.61349 5.67137 6.03388 6.52286 6.72325 6.79743 7.24375 7.34756 8.01181 8.78076 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.003421 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.334913 B = 8182.438075 C = 8776.022887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 1.103 2.897 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.303 1.303 7 C -0.324 4.324 8 H 0.042 0.958 9 N -0.619 5.619 10 C 0.071 3.929 11 C 0.107 3.893 12 H 0.098 0.902 13 O -0.561 6.561 14 C 0.151 3.849 15 H 0.081 0.919 16 N -0.705 5.705 17 C 0.514 3.486 18 O -0.582 6.582 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.137 4.137 27 C -0.155 4.155 28 C 0.131 3.869 29 H 0.250 0.750 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.401 0.599 33 H 0.413 0.587 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.012 0.988 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.035 -14.212 -12.824 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.263 4.263 3 Si 0.929 3.071 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.231 1.231 7 C -0.452 4.452 8 H 0.060 0.940 9 N -0.348 5.348 10 C -0.055 4.055 11 C 0.047 3.953 12 H 0.115 0.885 13 O -0.369 6.369 14 C 0.044 3.956 15 H 0.099 0.901 16 N -0.360 5.360 17 C 0.302 3.698 18 O -0.462 6.462 19 C -0.095 4.095 20 C -0.113 4.113 21 C -0.177 4.177 22 C -0.176 4.176 23 C -0.155 4.155 24 C -0.121 4.121 25 C -0.152 4.152 26 C -0.175 4.175 27 C -0.193 4.193 28 C 0.004 3.996 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.252 0.748 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.113 0.887 49 H 0.030 0.970 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.349 -12.773 -11.699 27.492 hybrid contribution -1.252 -1.206 0.476 1.802 sum 20.098 -13.979 -11.222 26.931 Atomic orbital electron populations 1.71017 1.06910 1.29162 1.52163 1.27176 0.96419 1.04241 0.98442 0.83334 0.73316 0.72108 0.78362 1.18169 1.20498 1.23084 1.19927 0.87937 0.95354 1.41990 0.93995 1.44625 1.09835 1.20959 1.59395 1.22847 0.95156 0.93118 0.94360 1.22946 0.86285 0.90196 0.95904 0.88478 1.86448 1.35357 1.44660 1.70484 1.21535 0.93437 0.85980 0.94606 0.90055 1.46152 1.42991 1.27263 1.19573 1.21467 0.77955 0.84707 0.85670 1.90678 1.62815 1.71738 1.20935 1.21446 0.96892 0.91109 1.00037 1.22300 0.93483 0.97587 0.97954 1.22963 0.95987 0.97140 1.01649 1.22805 0.98184 0.95415 1.01228 1.22958 0.94863 0.96121 1.01522 1.22504 0.94892 0.96788 0.97927 1.22963 0.97018 0.99202 0.96012 1.22772 0.97751 0.95971 1.00959 1.23194 0.98837 0.98676 0.98574 1.21714 0.88846 0.92183 0.96871 0.94064 0.91623 0.94394 0.74759 0.74637 0.86163 0.91427 0.89459 0.93839 0.90808 0.90026 0.90995 0.87877 0.90265 0.88131 0.90283 0.90582 0.90071 0.92887 0.88722 0.97026 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.70 21.65 0.30 -60.26 16 2 C -0.07 -4.05 5.43 84.86 0.46 -3.58 16 3 Si 1.10 53.25 24.70 68.60 1.69 54.95 16 4 H -0.26 -10.77 6.70 99.48 0.67 -10.11 16 5 H -0.28 -13.03 6.25 99.48 0.62 -12.40 16 6 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 7 C -0.32 -19.08 10.44 84.03 0.88 -18.20 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 9 N -0.62 -30.67 3.23 -691.98 -2.24 -32.90 16 10 C 0.07 2.89 4.44 86.85 0.39 3.27 16 11 C 0.11 3.35 4.06 31.99 0.13 3.48 16 12 H 0.10 2.57 8.01 -2.38 -0.02 2.55 16 13 O -0.56 -14.92 13.47 -148.98 -2.01 -16.93 16 14 C 0.15 5.32 3.04 46.18 0.14 5.46 16 15 H 0.08 3.28 7.55 -2.39 -0.02 3.26 16 16 N -0.70 -19.39 4.63 -436.90 -2.02 -21.42 16 17 C 0.51 14.83 7.13 87.66 0.62 15.45 16 18 O -0.58 -22.37 15.49 -3.03 -0.05 -22.42 16 19 C -0.07 -1.40 1.84 -11.54 -0.02 -1.42 16 20 C -0.09 -1.85 2.54 -10.27 -0.03 -1.88 16 21 C -0.14 -2.68 7.60 31.12 0.24 -2.45 16 22 C -0.14 -1.98 8.08 31.13 0.25 -1.73 16 23 C -0.12 -1.50 6.33 31.13 0.20 -1.30 16 24 C -0.10 -1.66 2.96 -10.26 -0.03 -1.70 16 25 C -0.11 -1.18 5.69 31.12 0.18 -1.00 16 26 C -0.14 -1.69 8.08 31.12 0.25 -1.44 16 27 C -0.16 -2.48 5.66 31.12 0.18 -2.31 16 28 C 0.13 5.66 7.01 86.73 0.61 6.27 16 29 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 30 H 0.07 2.68 6.52 -2.38 -0.02 2.67 16 31 H 0.04 1.62 5.46 -2.39 -0.01 1.61 16 32 H 0.40 6.80 9.11 -74.06 -0.67 6.12 16 33 H 0.41 8.80 5.24 -92.71 -0.49 8.31 16 34 H 0.12 1.71 7.74 -2.39 -0.02 1.69 16 35 H 0.07 1.73 7.86 -2.39 -0.02 1.71 16 36 H 0.09 1.46 7.96 -2.39 -0.02 1.44 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.92 6.86 -2.39 -0.02 0.90 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 0.72 7.66 -2.39 -0.02 0.70 16 44 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.09 1.23 6.51 -2.39 -0.02 1.21 16 49 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 50 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 Total: -1.00 -77.27 378.30 -0.27 -77.54 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.38 Total: 24.52 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 4.44 Total: -3.08 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.97 Total: -114.58 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -2.05 Total: -39.34 kcal Atomic # 14 Polarization: 53.25 SS G_CDS: 1.69 Total: 54.95 kcal Total: -77.27 -0.27 -77.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077575053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.829 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds