Wall clock time and date at job start Fri Apr 10 2020 18:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47126 * 240.00143 * 2 1 3 5 5 C 1.53004 * 109.47143 * 120.00050 * 2 1 3 6 6 C 1.54408 * 129.01369 * 59.99863 * 5 2 1 7 7 C 1.54412 * 78.89493 * 180.64719 * 6 5 2 8 8 C 1.50701 * 129.01482 * 180.64360 * 7 6 5 9 9 O 1.21282 * 119.99997 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.77725 * 31.76358 * 11 10 8 13 13 C 1.54318 * 110.72099 * 268.52203 * 11 10 8 14 14 N 1.47022 * 107.27229 * 219.44346 * 13 11 10 15 15 C 1.36940 * 125.64435 * 178.99669 * 14 13 11 16 16 H 1.07993 * 120.00454 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99320 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00680 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47206 * 90.00653 * 19 17 15 21 21 H 1.48501 * 109.47399 * 210.00241 * 19 17 15 22 22 H 1.48497 * 109.47297 * 330.00287 * 19 17 15 23 23 C 1.47463 * 108.72333 * 358.97539 * 14 13 11 24 24 C 1.54908 * 104.80851 * 24.07005 * 23 14 13 25 25 H 1.08998 * 111.00508 * 81.13844 * 24 23 14 26 26 O 1.42903 * 111.00478 * 204.94512 * 24 23 14 27 27 C 1.54893 * 84.49377 * 43.15481 * 7 6 5 28 28 C 1.54883 * 129.95373 * 181.17475 * 5 2 1 29 29 H 1.09000 * 109.47167 * 300.00418 * 1 2 3 30 30 H 1.09001 * 109.47084 * 59.99955 * 1 2 3 31 31 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47471 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47119 * 300.00024 * 3 2 1 34 34 H 1.09002 * 109.46961 * 60.00029 * 3 2 1 35 35 H 1.08999 * 109.47232 * 299.99660 * 4 2 1 36 36 H 1.08997 * 109.47207 * 60.00492 * 4 2 1 37 37 H 1.09003 * 109.46797 * 180.02562 * 4 2 1 38 38 H 1.08998 * 114.93126 * 68.15865 * 6 5 2 39 39 H 1.09001 * 114.93411 * 293.13428 * 6 5 2 40 40 H 0.97005 * 120.00046 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.88158 * 338.86600 * 13 11 10 42 42 H 1.09001 * 109.87849 * 100.02538 * 13 11 10 43 43 H 0.96996 * 120.00637 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.34831 * 265.25242 * 23 14 13 45 45 H 1.09001 * 110.40424 * 142.91356 * 23 14 13 46 46 H 0.96700 * 114.00311 * 295.42350 * 26 24 23 47 47 H 1.08998 * 114.97512 * 69.39256 * 27 7 6 48 48 H 1.08999 * 114.97787 * 204.56892 * 27 7 6 49 49 H 1.09004 * 116.12718 * 67.75500 * 28 5 2 50 50 H 1.09007 * 113.83187 * 292.59349 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.7984 -2.1793 1.6966 7 6 2.6730 -1.6537 2.8555 8 6 3.1647 -2.3829 4.0792 9 8 2.8748 -3.5485 4.2478 10 7 3.9273 -1.7402 4.9857 11 6 4.4057 -2.4493 6.1751 12 1 4.5707 -3.5043 5.9560 13 6 3.4139 -2.2833 7.3456 14 7 4.2088 -2.1078 8.5698 15 6 3.7043 -1.9091 9.8273 16 1 2.6361 -1.8714 9.9808 17 6 4.5662 -1.7574 10.9048 18 7 5.8683 -1.8039 10.7178 19 14 3.8782 -1.4857 12.6201 20 1 3.6758 -2.7976 13.2857 21 1 4.8330 -0.6705 13.4131 22 1 2.5789 -0.7731 12.5251 23 6 5.6394 -2.1814 8.2198 24 6 5.7010 -1.7930 6.7215 25 1 5.6731 -0.7105 6.5970 26 8 6.8598 -2.3479 6.0957 27 6 1.7755 -0.3946 2.7637 28 6 3.4907 -0.9712 1.7309 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.2712 -2.9362 1.0708 39 1 0.7685 -2.4122 1.9672 40 1 4.1594 -0.8081 4.8507 41 1 2.7889 -1.4057 7.1803 42 1 2.7909 -3.1735 7.4326 43 1 6.4705 -1.6975 11.4707 44 1 6.0134 -3.1950 8.3647 45 1 6.2141 -1.4749 8.8188 46 1 7.6954 -2.0036 6.4396 47 1 0.7448 -0.5395 3.0873 48 1 2.2301 0.5229 3.1375 49 1 4.0523 -0.0897 2.0402 50 1 4.0550 -1.6525 1.0939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078254814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:09 Heat of formation + Delta-G solvation = 28.990430 kcal Electronic energy + Delta-G solvation = -28076.906032 eV Core-core repulsion = 24301.194563 eV Total energy + Delta-G solvation = -3775.711469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33854 -39.26170 -37.64174 -36.20289 -35.07935 -34.00704 -31.71729 -28.58895 -27.76179 -27.74932 -27.22745 -25.67208 -25.57684 -25.44784 -24.15411 -21.87531 -20.67186 -20.06790 -19.28091 -17.81640 -17.19061 -16.97798 -16.60733 -15.70990 -15.06132 -14.77799 -14.54416 -14.52269 -14.48223 -14.32657 -14.17695 -13.81851 -13.57831 -13.17586 -12.88567 -12.63161 -12.61216 -12.34288 -11.98857 -11.93711 -11.64516 -11.54669 -11.47525 -11.33557 -11.29941 -11.13169 -11.06189 -11.00540 -10.96271 -10.84956 -10.29086 -10.20933 -10.19679 -9.95012 -9.73047 -9.66947 -9.26866 -8.76677 -8.73625 -6.93946 -5.73934 -3.16378 2.64420 3.24380 3.36927 3.42020 3.43641 3.91484 4.02435 4.14002 4.26395 4.38508 4.45927 4.49032 4.60637 4.80966 4.83331 4.87535 5.17262 5.29376 5.33560 5.34406 5.40245 5.42290 5.43215 5.49019 5.54872 5.60834 5.61407 5.62459 5.65631 5.72484 5.74163 5.75160 5.79584 5.84521 5.85921 6.06376 6.07019 6.08532 6.17637 6.20832 6.47455 6.65406 6.92438 7.29880 7.50759 7.67193 7.75020 8.08926 8.23563 8.43108 9.12108 9.72590 10.35004 11.30422 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.002583 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.826668 B =10836.392363 C =11275.728761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.106 4.106 6 C -0.088 4.088 7 C -0.161 4.161 8 C 0.573 3.427 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.141 3.859 12 H 0.102 0.898 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.918 3.082 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.129 3.871 24 C 0.067 3.933 25 H 0.061 0.939 26 O -0.566 6.566 27 C -0.100 4.100 28 C -0.096 4.096 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.113 0.887 46 H 0.377 0.623 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 7.223 -22.817 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.005 4.005 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.164 4.164 8 C 0.358 3.642 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.036 3.964 12 H 0.120 0.880 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.748 3.252 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.004 3.996 24 C 0.007 3.993 25 H 0.079 0.921 26 O -0.371 6.371 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.131 0.869 46 H 0.224 0.776 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.658 6.069 -22.800 24.263 hybrid contribution 0.240 0.738 1.337 1.546 sum -5.418 6.807 -21.463 23.160 Atomic orbital electron populations 1.21827 0.93987 1.02106 1.01866 1.19529 0.95263 0.94476 0.91275 1.21828 1.01256 0.94788 1.01874 1.21826 1.01261 1.00405 0.96282 1.24343 0.96376 0.96264 0.93636 1.23750 0.99211 0.95527 0.94035 1.23814 0.99778 0.98370 0.94450 1.18625 0.77770 0.86036 0.81799 1.90710 1.57071 1.16396 1.76896 1.45858 1.52272 1.15006 1.22521 1.22036 0.92682 0.97824 0.83835 0.87993 1.21630 0.93425 0.98706 0.85963 1.44301 1.00985 1.85107 1.02398 1.19109 0.91975 1.41653 0.82295 0.90191 1.24804 0.95453 1.02145 0.98233 1.69732 1.00960 1.57083 1.29563 0.86017 0.77707 0.77739 0.83708 1.21503 1.21594 1.20624 1.22570 0.87368 1.01193 0.88514 1.23641 0.84250 0.95482 0.95931 0.92097 1.86414 1.16212 1.70011 1.64429 1.24548 0.99093 0.95498 0.94632 1.24066 0.95359 0.99395 0.94580 0.92405 0.92421 0.92429 0.92443 0.92452 0.92401 0.92434 0.92414 0.92461 0.90676 0.90574 0.76773 0.95147 0.94863 0.93580 0.95630 0.86947 0.77571 0.90465 0.90306 0.90301 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.47 37.16 0.31 -0.61 16 2 C -0.01 -0.04 1.02 -154.51 -0.16 -0.20 16 3 C -0.14 -0.88 8.47 37.16 0.31 -0.57 16 4 C -0.14 -0.91 8.47 37.16 0.31 -0.59 16 5 C -0.11 -0.91 1.67 -169.85 -0.28 -1.19 16 6 C -0.09 -0.94 7.78 -26.72 -0.21 -1.15 16 7 C -0.16 -1.95 3.36 -172.26 -0.58 -2.53 16 8 C 0.57 9.37 7.94 -10.99 -0.09 9.28 16 9 O -0.53 -10.96 16.74 5.56 0.09 -10.86 16 10 N -0.71 -11.16 5.10 -52.03 -0.27 -11.43 16 11 C 0.14 2.73 3.05 -66.10 -0.20 2.52 16 12 H 0.10 2.21 7.55 -51.93 -0.39 1.81 16 13 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 14 N -0.60 -15.40 3.40 -170.04 -0.58 -15.98 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 19 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 3.08 5.62 -2.51 -0.01 3.07 16 24 C 0.07 1.27 4.05 -24.58 -0.10 1.17 16 25 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 26 O -0.57 -9.82 13.47 -35.23 -0.47 -10.29 16 27 C -0.10 -0.98 7.95 -24.71 -0.20 -1.17 16 28 C -0.10 -0.92 7.84 -25.99 -0.20 -1.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 40 H 0.40 5.21 8.56 -40.82 -0.35 4.86 16 41 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 2.92 5.88 -51.93 -0.31 2.61 16 46 H 0.38 4.99 9.12 45.56 0.42 5.40 16 47 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 48 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 49 H 0.08 0.68 7.97 -51.93 -0.41 0.26 16 50 H 0.07 0.72 7.93 -51.92 -0.41 0.31 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -32.39 398.60 -9.17 -41.56 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.13 Total: 6.93 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.36 Total: 3.03 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.28 Total: -53.20 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.38 Total: -21.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.39 -9.17 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078254814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds