Wall clock time and date at job start Fri Apr 10 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47126 * 240.00143 * 2 1 3 5 5 C 1.53004 * 109.47143 * 120.00050 * 2 1 3 6 6 C 1.54408 * 129.01369 * 59.99863 * 5 2 1 7 7 C 1.54412 * 78.89493 * 180.64719 * 6 5 2 8 8 C 1.50701 * 129.01482 * 180.64360 * 7 6 5 9 9 O 1.21282 * 119.99997 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.77725 * 31.76358 * 11 10 8 13 13 C 1.54318 * 110.72099 * 268.52203 * 11 10 8 14 14 N 1.47022 * 107.27229 * 219.44346 * 13 11 10 15 15 C 1.36940 * 125.64435 * 178.99669 * 14 13 11 16 16 H 1.07993 * 120.00454 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99320 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00680 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99695 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47206 * 90.00653 * 19 17 15 21 21 H 1.48501 * 109.47399 * 210.00241 * 19 17 15 22 22 H 1.48497 * 109.47297 * 330.00287 * 19 17 15 23 23 C 1.47463 * 108.72333 * 358.97539 * 14 13 11 24 24 C 1.54908 * 104.80851 * 24.07005 * 23 14 13 25 25 H 1.08998 * 111.00508 * 81.13844 * 24 23 14 26 26 O 1.42903 * 111.00478 * 204.94512 * 24 23 14 27 27 C 1.54893 * 84.49377 * 43.15481 * 7 6 5 28 28 C 1.54883 * 129.95373 * 181.17475 * 5 2 1 29 29 H 1.09000 * 109.47167 * 300.00418 * 1 2 3 30 30 H 1.09001 * 109.47084 * 59.99955 * 1 2 3 31 31 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47471 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47119 * 300.00024 * 3 2 1 34 34 H 1.09002 * 109.46961 * 60.00029 * 3 2 1 35 35 H 1.08999 * 109.47232 * 299.99660 * 4 2 1 36 36 H 1.08997 * 109.47207 * 60.00492 * 4 2 1 37 37 H 1.09003 * 109.46797 * 180.02562 * 4 2 1 38 38 H 1.08998 * 114.93126 * 68.15865 * 6 5 2 39 39 H 1.09001 * 114.93411 * 293.13428 * 6 5 2 40 40 H 0.97005 * 120.00046 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.88158 * 338.86600 * 13 11 10 42 42 H 1.09001 * 109.87849 * 100.02538 * 13 11 10 43 43 H 0.96996 * 120.00637 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.34831 * 265.25242 * 23 14 13 45 45 H 1.09001 * 110.40424 * 142.91356 * 23 14 13 46 46 H 0.96700 * 114.00311 * 295.42350 * 26 24 23 47 47 H 1.08998 * 114.97512 * 69.39256 * 27 7 6 48 48 H 1.08999 * 114.97787 * 204.56892 * 27 7 6 49 49 H 1.09004 * 116.12718 * 67.75500 * 28 5 2 50 50 H 1.09007 * 113.83187 * 292.59349 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.7984 -2.1793 1.6966 7 6 2.6730 -1.6537 2.8555 8 6 3.1647 -2.3829 4.0792 9 8 2.8748 -3.5485 4.2478 10 7 3.9273 -1.7402 4.9857 11 6 4.4057 -2.4493 6.1751 12 1 4.5707 -3.5043 5.9560 13 6 3.4139 -2.2833 7.3456 14 7 4.2088 -2.1078 8.5698 15 6 3.7043 -1.9091 9.8273 16 1 2.6361 -1.8714 9.9808 17 6 4.5662 -1.7574 10.9048 18 7 5.8683 -1.8039 10.7178 19 14 3.8782 -1.4857 12.6201 20 1 3.6758 -2.7976 13.2857 21 1 4.8330 -0.6705 13.4131 22 1 2.5789 -0.7731 12.5251 23 6 5.6394 -2.1814 8.2198 24 6 5.7010 -1.7930 6.7215 25 1 5.6731 -0.7105 6.5970 26 8 6.8598 -2.3479 6.0957 27 6 1.7755 -0.3946 2.7637 28 6 3.4907 -0.9712 1.7309 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 2.2712 -2.9362 1.0708 39 1 0.7685 -2.4122 1.9672 40 1 4.1594 -0.8081 4.8507 41 1 2.7889 -1.4057 7.1803 42 1 2.7909 -3.1735 7.4326 43 1 6.4705 -1.6975 11.4707 44 1 6.0134 -3.1950 8.3647 45 1 6.2141 -1.4749 8.8188 46 1 7.6954 -2.0036 6.4396 47 1 0.7448 -0.5395 3.0873 48 1 2.2301 0.5229 3.1375 49 1 4.0523 -0.0897 2.0402 50 1 4.0550 -1.6525 1.0939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078254814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:08 Heat of formation + Delta-G solvation = 6.989669 kcal Electronic energy + Delta-G solvation = -28077.860056 eV Core-core repulsion = 24301.194563 eV Total energy + Delta-G solvation = -3776.665493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.17699 -40.73002 -39.20571 -36.78434 -36.71313 -35.61780 -33.63921 -30.38977 -28.96754 -28.28631 -28.25326 -26.95275 -26.39387 -26.33765 -25.69612 -22.92842 -22.39998 -21.71941 -20.44386 -19.06028 -18.55310 -18.44204 -17.72195 -17.36035 -16.68794 -16.09234 -15.92461 -15.55609 -15.24351 -15.22773 -15.11704 -14.89675 -14.82694 -14.79855 -14.23325 -14.04609 -13.77444 -13.24803 -13.20243 -13.12027 -13.08255 -12.87227 -12.74742 -12.49045 -12.29458 -12.19542 -12.08499 -12.07211 -11.96030 -11.92379 -11.72078 -11.70552 -11.45947 -11.11034 -11.01127 -10.94100 -10.79987 -10.68752 -10.25048 -9.00380 -7.84150 -5.30743 1.39221 1.46553 1.48530 1.57124 1.94531 2.45432 3.04186 3.18984 3.23989 3.27409 3.31653 3.50243 3.55091 3.60467 3.62183 3.82953 3.98210 4.06607 4.17601 4.26742 4.28204 4.39068 4.53682 4.55156 4.64945 4.66689 4.78659 4.80132 4.86326 4.87383 4.90524 4.96309 4.97129 4.99448 5.03623 5.15498 5.15701 5.23026 5.28945 5.34882 5.38813 5.41790 5.52001 5.56292 5.58188 5.64922 6.18344 6.46540 6.83826 7.02351 7.14931 7.66067 8.28428 9.17807 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.002583 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.826668 B =10836.392363 C =11275.728761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.079 4.079 6 C -0.095 4.095 7 C -0.186 4.186 8 C 0.570 3.430 9 O -0.584 6.584 10 N -0.693 5.693 11 C 0.154 3.846 12 H 0.075 0.925 13 C 0.132 3.868 14 N -0.619 5.619 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.984 3.016 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.269 1.269 23 C 0.133 3.867 24 C 0.093 3.907 25 H 0.088 0.912 26 O -0.568 6.568 27 C -0.093 4.093 28 C -0.086 4.086 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.416 0.584 41 H 0.043 0.957 42 H 0.013 0.987 43 H 0.251 0.749 44 H -0.009 1.009 45 H 0.093 0.907 46 H 0.397 0.603 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 9.629 -24.473 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.079 4.079 6 C -0.133 4.133 7 C -0.189 4.189 8 C 0.358 3.642 9 O -0.464 6.464 10 N -0.344 5.344 11 C 0.048 3.952 12 H 0.094 0.906 13 C 0.005 3.995 14 N -0.346 5.346 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.812 3.188 20 H -0.217 1.217 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.008 3.992 24 C 0.032 3.968 25 H 0.106 0.894 26 O -0.376 6.376 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.061 0.939 44 H 0.009 0.991 45 H 0.111 0.889 46 H 0.248 0.752 47 H 0.092 0.908 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.948 8.515 -24.490 26.601 hybrid contribution 0.334 -0.092 1.842 1.874 sum -5.613 8.423 -22.648 24.807 Atomic orbital electron populations 1.21840 0.93679 1.01886 1.02441 1.19597 0.95494 0.94926 0.90382 1.21828 1.01387 0.93954 1.02469 1.21835 1.01289 1.00152 0.96516 1.24256 0.95475 0.94339 0.93795 1.23850 0.98577 0.97206 0.93687 1.23799 1.01935 0.99735 0.93467 1.19342 0.76685 0.85607 0.82596 1.90683 1.58778 1.18780 1.78124 1.45647 1.51961 1.15612 1.21178 1.21573 0.92456 0.96990 0.84226 0.90641 1.21665 0.93750 0.98126 0.85935 1.44554 1.02151 1.85018 1.02907 1.19444 0.92324 1.41958 0.83630 0.90133 1.25642 0.95854 1.02065 1.01809 1.69948 1.01870 1.57470 1.30277 0.85000 0.77492 0.77380 0.78946 1.21657 1.21367 1.19339 1.22398 0.86288 0.98689 0.91868 1.23254 0.84663 0.96651 0.92191 0.89391 1.86387 1.16837 1.70411 1.63960 1.24587 0.98418 0.94638 0.95426 1.24088 0.95835 0.99538 0.92928 0.92577 0.91153 0.93090 0.92244 0.91363 0.92400 0.93083 0.91156 0.92429 0.91134 0.91215 0.74725 0.93946 0.96890 0.93901 0.99082 0.88929 0.75219 0.90831 0.88594 0.88458 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.47 71.98 0.61 -0.92 16 2 C 0.00 -0.04 1.02 -52.18 -0.05 -0.10 16 3 C -0.14 -1.28 8.47 71.98 0.61 -0.67 16 4 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 5 C -0.08 -1.17 1.67 -62.12 -0.10 -1.28 16 6 C -0.10 -1.99 7.78 30.60 0.24 -1.75 16 7 C -0.19 -4.30 3.36 -63.68 -0.21 -4.51 16 8 C 0.57 18.59 7.94 87.66 0.70 19.29 16 9 O -0.58 -24.73 16.74 -3.04 -0.05 -24.78 16 10 N -0.69 -21.23 5.10 -436.92 -2.23 -23.46 16 11 C 0.15 5.97 3.05 46.18 0.14 6.11 16 12 H 0.08 3.38 7.55 -2.38 -0.02 3.36 16 13 C 0.13 5.92 6.99 86.73 0.61 6.52 16 14 N -0.62 -32.41 3.40 -691.90 -2.35 -34.76 16 15 C -0.25 -13.81 10.27 84.03 0.86 -12.94 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 18 N -0.95 -54.82 10.09 21.65 0.22 -54.60 16 19 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.13 6.50 5.62 86.85 0.49 6.99 16 24 C 0.09 3.44 4.05 31.98 0.13 3.57 16 25 H 0.09 2.85 8.01 -2.39 -0.02 2.83 16 26 O -0.57 -18.97 13.47 -148.98 -2.01 -20.97 16 27 C -0.09 -1.61 7.95 31.90 0.25 -1.36 16 28 C -0.09 -1.44 7.84 31.07 0.24 -1.20 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.51 7.94 -2.39 -0.02 1.49 16 39 H 0.07 1.51 7.91 -2.39 -0.02 1.49 16 40 H 0.42 9.86 8.56 -92.70 -0.79 9.07 16 41 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.09 4.90 5.88 -2.39 -0.01 4.89 16 46 H 0.40 9.80 9.12 -74.06 -0.68 9.13 16 47 H 0.07 1.34 7.91 -2.39 -0.02 1.32 16 48 H 0.10 1.36 7.97 -2.39 -0.02 1.34 16 49 H 0.10 1.30 7.97 -2.38 -0.02 1.28 16 50 H 0.07 1.28 7.93 -2.38 -0.02 1.26 16 Total: -1.00 -71.95 398.60 0.65 -71.29 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.54 Total: 26.23 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.58 Total: 13.96 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -4.36 Total: -112.82 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.06 Total: -45.75 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.95 0.65 -71.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078254814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.284 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds