Wall clock time and date at job start Fri Apr 10 2020 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.91829 * 2 1 4 4 C 1.55121 * 111.16241 * 236.07295 * 2 1 3 5 5 N 1.47424 * 104.94313 * 205.13160 * 4 2 1 6 6 C 1.36946 * 125.64625 * 204.03592 * 5 4 2 7 7 H 1.07996 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99663 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99961 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99746 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47272 * 60.00301 * 10 8 6 12 12 H 1.48504 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47253 * 300.00304 * 10 8 6 14 14 C 1.47018 * 108.70681 * 24.00352 * 5 4 2 15 15 C 1.54325 * 107.26912 * 358.93693 * 14 5 4 16 16 H 1.09006 * 110.71562 * 96.34967 * 15 14 5 17 17 N 1.46499 * 110.72534 * 219.44356 * 15 14 5 18 18 C 1.34770 * 120.00207 * 271.16574 * 17 15 14 19 19 O 1.21537 * 120.00086 * 359.97438 * 18 17 15 20 20 C 1.47999 * 119.99877 * 179.97438 * 18 17 15 21 21 N 1.34185 * 126.70253 * 0.02562 * 20 18 17 22 22 N 1.28983 * 107.25725 * 179.97438 * 21 20 18 23 23 N 1.28724 * 108.98458 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.31588 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47431 * 0.02562 * 24 23 22 26 26 C 1.53000 * 109.47005 * 120.02811 * 24 23 22 27 27 C 1.52999 * 109.47018 * 240.02521 * 24 23 22 28 28 N 1.28864 * 109.36229 * 0.02562 * 23 22 21 29 29 H 1.09004 * 109.46832 * 296.09759 * 1 2 3 30 30 H 1.08999 * 109.47124 * 56.09664 * 1 2 3 31 31 H 1.09000 * 109.47075 * 176.09979 * 1 2 3 32 32 H 1.08999 * 110.42394 * 86.19677 * 4 2 1 33 33 H 1.09008 * 110.29905 * 323.99729 * 4 2 1 34 34 H 0.97004 * 119.99877 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.88231 * 239.52819 * 14 5 4 36 36 H 1.08990 * 110.01617 * 118.42880 * 14 5 4 37 37 H 0.96998 * 119.99492 * 91.15865 * 17 15 14 38 38 H 1.09001 * 109.47075 * 60.00338 * 25 24 23 39 39 H 1.08999 * 109.47283 * 179.97438 * 25 24 23 40 40 H 1.08996 * 109.47699 * 300.00369 * 25 24 23 41 41 H 1.09003 * 109.47462 * 59.99797 * 26 24 23 42 42 H 1.08999 * 109.46996 * 179.97438 * 26 24 23 43 43 H 1.09001 * 109.47051 * 299.99386 * 26 24 23 44 44 H 1.08998 * 109.47509 * 60.00462 * 27 24 23 45 45 H 1.09005 * 109.47384 * 180.02562 * 27 24 23 46 46 H 1.09003 * 109.47530 * 300.00252 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7706 6 6 4.4679 -1.5728 -1.6023 7 1 4.3395 -1.5175 -2.6732 8 6 5.6851 -1.9739 -1.0689 9 7 5.8413 -2.0418 0.2362 10 14 7.1013 -2.4171 -2.2035 11 1 7.4476 -1.2435 -3.0448 12 1 8.2816 -2.8093 -1.3920 13 1 6.7009 -3.5505 -3.0756 14 6 3.4672 -1.2781 0.6988 15 6 2.0862 -0.8079 1.2022 16 1 1.4451 -1.6614 1.4229 17 7 2.2287 0.0495 2.3815 18 6 2.2500 -0.4968 3.6133 19 8 2.1505 -1.7008 3.7459 20 6 2.3945 0.3694 4.8046 21 7 2.5133 1.7060 4.8147 22 7 2.6153 2.0718 6.0473 23 7 2.5649 1.0283 6.7993 24 6 2.6484 1.0336 8.2619 25 6 2.8043 2.4723 8.7587 26 6 1.3717 0.4272 8.8478 27 6 3.8564 0.2068 8.7068 28 7 2.4307 -0.0218 6.0646 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0699 32 1 2.1641 -0.1733 -2.0838 33 1 1.4552 -1.6696 -1.4053 34 1 6.6917 -2.3224 0.6089 35 1 4.2434 -0.6057 1.0640 36 1 3.6625 -2.2927 1.0459 37 1 2.3078 1.0105 2.2757 38 1 1.9436 3.0614 8.4418 39 1 2.8659 2.4763 9.8469 40 1 3.7137 2.9044 8.3413 41 1 1.2606 -0.5977 8.4939 42 1 1.4340 0.4308 9.9360 43 1 0.5111 1.0163 8.5309 44 1 4.7660 0.6388 8.2895 45 1 3.9183 0.2104 9.7951 46 1 3.7455 -0.8182 8.3529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079739982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:12 Heat of formation + Delta-G solvation = 117.354158 kcal Electronic energy + Delta-G solvation = -27690.287547 eV Core-core repulsion = 23847.160225 eV Total energy + Delta-G solvation = -3843.127322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46238 -39.53352 -37.96573 -37.41317 -34.08204 -33.50254 -32.79192 -32.25946 -30.34051 -28.25416 -28.02977 -27.88703 -25.70734 -25.16198 -24.54671 -23.37389 -21.11582 -20.80484 -20.03253 -19.71578 -17.82195 -17.45535 -16.93360 -16.73756 -15.93645 -15.01201 -14.76308 -14.73896 -14.44392 -14.17410 -13.98883 -13.70171 -13.36639 -13.16481 -12.97469 -12.85797 -12.76563 -12.69763 -12.32938 -12.30013 -12.02373 -11.93156 -11.68107 -11.59948 -11.31263 -11.10273 -11.05382 -10.99610 -10.73128 -10.65183 -10.44431 -10.35627 -10.02646 -9.94513 -9.88132 -9.65488 -8.61236 -8.52028 -6.79857 -5.65124 -3.00408 1.00976 1.51988 1.55645 3.00105 3.34996 3.44563 3.48370 3.50284 3.76617 4.03905 4.10940 4.16258 4.52677 4.57870 4.92678 4.94333 4.97794 5.07582 5.11446 5.16336 5.17680 5.28194 5.34669 5.44952 5.47462 5.56413 5.59245 5.62417 5.74502 5.77957 6.00039 6.01109 6.02114 6.17892 6.19829 6.36654 6.50879 6.65809 6.68829 6.94927 7.52110 7.60779 7.77923 7.88258 8.16574 8.29158 8.38321 9.25292 9.86292 10.50956 11.45572 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.003042 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.098991 B = 9202.238462 C =10313.583940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.142 3.858 5 N -0.605 5.605 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.172 3.828 15 C 0.121 3.879 16 H 0.093 0.907 17 N -0.687 5.687 18 C 0.613 3.387 19 O -0.507 6.507 20 C 0.135 3.865 21 N -0.257 5.257 22 N -0.059 5.059 23 N -0.128 5.128 24 C 0.177 3.823 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.162 4.162 28 N -0.246 5.246 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.023 0.977 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.406 0.594 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 9.487 18.386 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.099 0.901 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.046 3.954 15 C 0.016 3.984 16 H 0.111 0.889 17 N -0.338 5.338 18 C 0.392 3.608 19 O -0.378 6.378 20 C -0.149 4.149 21 N -0.131 5.131 22 N -0.052 5.052 23 N -0.043 5.043 24 C 0.096 3.904 25 C -0.211 4.211 26 C -0.218 4.218 27 C -0.220 4.220 28 N -0.099 5.099 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.242 0.758 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.843 9.027 18.837 23.091 hybrid contribution 0.928 -0.152 -0.772 1.216 sum -8.915 8.876 18.065 22.014 Atomic orbital electron populations 1.21704 0.94894 1.01844 1.01122 1.22667 0.94934 0.99706 0.96042 0.90141 1.21625 0.87597 0.95017 0.94260 1.44378 1.08039 1.79112 1.01669 1.18998 0.89349 1.38619 0.88913 0.90320 1.24830 0.97894 1.01696 0.95992 1.69957 1.24400 1.53105 1.09139 0.86196 0.81869 0.78242 0.79403 1.21202 1.21658 1.21152 1.21491 0.89790 1.00543 0.83528 1.22657 1.00794 0.92662 0.82240 0.88944 1.45653 1.72150 1.11448 1.04506 1.16080 0.78261 0.85669 0.80756 1.90858 1.48729 1.12979 1.85196 1.25494 1.05824 0.90404 0.93219 1.76129 1.16382 1.10311 1.10327 1.78844 1.15737 1.14590 0.96034 1.50717 1.42136 1.00878 1.10553 1.21485 0.99480 1.00078 0.69319 1.22101 1.04735 0.91856 1.02373 1.22256 0.94628 1.02733 1.02211 1.22270 0.95573 1.01087 1.03064 1.75001 1.17890 1.14412 1.02621 0.93030 0.92650 0.92517 0.93850 0.95940 0.93684 0.92983 0.93152 0.75839 0.90539 0.89164 0.90451 0.90152 0.89034 0.91332 0.91182 0.89035 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.32 37.16 0.35 -1.51 16 2 C -0.11 -1.92 3.27 -88.36 -0.29 -2.21 16 3 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 4 C 0.14 2.89 6.72 -2.41 -0.02 2.87 16 5 N -0.61 -15.65 3.40 -169.94 -0.58 -16.23 16 6 C -0.23 -6.51 10.28 -15.05 -0.15 -6.67 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.89 10.31 55.49 0.57 -27.32 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.17 4.34 5.13 -3.07 -0.02 4.32 16 15 C 0.12 2.36 2.74 -66.09 -0.18 2.18 16 16 H 0.09 1.86 7.52 -51.93 -0.39 1.47 16 17 N -0.69 -12.11 5.11 -52.92 -0.27 -12.38 16 18 C 0.61 11.65 7.84 -12.26 -0.10 11.56 16 19 O -0.51 -11.22 16.78 5.33 0.09 -11.13 16 20 C 0.13 2.30 8.14 -156.24 -1.27 1.03 16 21 N -0.26 -4.07 12.26 32.10 0.39 -3.67 16 22 N -0.06 -0.82 12.21 60.35 0.74 -0.09 16 23 N -0.13 -1.61 3.72 0.52 0.00 -1.60 16 24 C 0.18 1.38 1.30 -131.82 -0.17 1.20 16 25 C -0.15 -0.84 7.90 37.16 0.29 -0.55 16 26 C -0.16 -0.98 8.66 37.16 0.32 -0.66 16 27 C -0.16 -1.10 8.66 37.16 0.32 -0.78 16 28 N -0.25 -3.86 11.85 32.11 0.38 -3.47 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.46 7.99 -51.92 -0.41 0.04 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.05 1.45 7.27 -51.93 -0.38 1.07 16 36 H 0.05 1.46 7.50 -51.93 -0.39 1.07 16 37 H 0.41 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -34.81 380.43 -6.33 -41.15 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.36 Total: 1.03 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.01 Total: 10.47 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 1.24 Total: -64.77 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.81 -6.33 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079739982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.500 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds