Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.91829 * 2 1 4 4 C 1.55121 * 111.16241 * 236.07295 * 2 1 3 5 5 N 1.47424 * 104.94313 * 205.13160 * 4 2 1 6 6 C 1.36946 * 125.64625 * 204.03592 * 5 4 2 7 7 H 1.07996 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99663 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99961 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99746 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47272 * 60.00301 * 10 8 6 12 12 H 1.48504 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47253 * 300.00304 * 10 8 6 14 14 C 1.47018 * 108.70681 * 24.00352 * 5 4 2 15 15 C 1.54325 * 107.26912 * 358.93693 * 14 5 4 16 16 H 1.09006 * 110.71562 * 96.34967 * 15 14 5 17 17 N 1.46499 * 110.72534 * 219.44356 * 15 14 5 18 18 C 1.34770 * 120.00207 * 271.16574 * 17 15 14 19 19 O 1.21537 * 120.00086 * 359.97438 * 18 17 15 20 20 C 1.47999 * 119.99877 * 179.97438 * 18 17 15 21 21 N 1.34185 * 126.70253 * 0.02562 * 20 18 17 22 22 N 1.28983 * 107.25725 * 179.97438 * 21 20 18 23 23 N 1.28724 * 108.98458 * 359.97438 * 22 21 20 24 24 C 1.46497 * 125.31588 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47431 * 0.02562 * 24 23 22 26 26 C 1.53000 * 109.47005 * 120.02811 * 24 23 22 27 27 C 1.52999 * 109.47018 * 240.02521 * 24 23 22 28 28 N 1.28864 * 109.36229 * 0.02562 * 23 22 21 29 29 H 1.09004 * 109.46832 * 296.09759 * 1 2 3 30 30 H 1.08999 * 109.47124 * 56.09664 * 1 2 3 31 31 H 1.09000 * 109.47075 * 176.09979 * 1 2 3 32 32 H 1.08999 * 110.42394 * 86.19677 * 4 2 1 33 33 H 1.09008 * 110.29905 * 323.99729 * 4 2 1 34 34 H 0.97004 * 119.99877 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.88231 * 239.52819 * 14 5 4 36 36 H 1.08990 * 110.01617 * 118.42880 * 14 5 4 37 37 H 0.96998 * 119.99492 * 91.15865 * 17 15 14 38 38 H 1.09001 * 109.47075 * 60.00338 * 25 24 23 39 39 H 1.08999 * 109.47283 * 179.97438 * 25 24 23 40 40 H 1.08996 * 109.47699 * 300.00369 * 25 24 23 41 41 H 1.09003 * 109.47462 * 59.99797 * 26 24 23 42 42 H 1.08999 * 109.46996 * 179.97438 * 26 24 23 43 43 H 1.09001 * 109.47051 * 299.99386 * 26 24 23 44 44 H 1.08998 * 109.47509 * 60.00462 * 27 24 23 45 45 H 1.09005 * 109.47384 * 180.02562 * 27 24 23 46 46 H 1.09003 * 109.47530 * 300.00252 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4298 -1.2474 -0.7706 6 6 4.4679 -1.5728 -1.6023 7 1 4.3395 -1.5175 -2.6732 8 6 5.6851 -1.9739 -1.0689 9 7 5.8413 -2.0418 0.2362 10 14 7.1013 -2.4171 -2.2035 11 1 7.4476 -1.2435 -3.0448 12 1 8.2816 -2.8093 -1.3920 13 1 6.7009 -3.5505 -3.0756 14 6 3.4672 -1.2781 0.6988 15 6 2.0862 -0.8079 1.2022 16 1 1.4451 -1.6614 1.4229 17 7 2.2287 0.0495 2.3815 18 6 2.2500 -0.4968 3.6133 19 8 2.1505 -1.7008 3.7459 20 6 2.3945 0.3694 4.8046 21 7 2.5133 1.7060 4.8147 22 7 2.6153 2.0718 6.0473 23 7 2.5649 1.0283 6.7993 24 6 2.6484 1.0336 8.2619 25 6 2.8043 2.4723 8.7587 26 6 1.3717 0.4272 8.8478 27 6 3.8564 0.2068 8.7068 28 7 2.4307 -0.0218 6.0646 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0699 32 1 2.1641 -0.1733 -2.0838 33 1 1.4552 -1.6696 -1.4053 34 1 6.6917 -2.3224 0.6089 35 1 4.2434 -0.6057 1.0640 36 1 3.6625 -2.2927 1.0459 37 1 2.3078 1.0105 2.2757 38 1 1.9436 3.0614 8.4418 39 1 2.8659 2.4763 9.8469 40 1 3.7137 2.9044 8.3413 41 1 1.2606 -0.5977 8.4939 42 1 1.4340 0.4308 9.9360 43 1 0.5111 1.0163 8.5309 44 1 4.7660 0.6388 8.2895 45 1 3.9183 0.2104 9.7951 46 1 3.7455 -0.8182 8.3529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079739982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = 91.881112 kcal Electronic energy + Delta-G solvation = -27691.392142 eV Core-core repulsion = 23847.160225 eV Total energy + Delta-G solvation = -3844.231916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.61848 -41.10796 -39.21982 -38.59827 -35.79633 -34.74605 -34.40257 -33.47730 -32.16415 -29.82185 -28.59672 -28.54300 -27.46189 -26.54968 -25.62884 -25.02580 -22.67578 -21.92511 -21.60456 -21.25483 -19.07902 -18.88107 -18.56187 -17.74507 -17.56630 -16.90138 -16.15088 -15.97710 -15.59213 -15.28470 -15.15691 -15.12704 -14.80146 -14.49731 -14.12899 -14.02918 -13.76255 -13.48442 -13.34077 -13.30053 -13.22929 -13.05477 -12.85360 -12.84625 -12.64988 -12.57327 -12.37904 -12.26743 -12.15200 -12.12124 -12.11018 -11.85317 -11.71941 -11.51581 -11.48069 -11.46189 -10.73504 -10.20127 -8.92222 -7.84097 -5.21878 -0.18295 0.23373 0.62938 1.44694 1.49047 1.55183 1.63586 1.88461 2.49415 2.75863 2.93063 3.34538 3.47911 3.52529 3.59812 3.65022 3.75034 3.96327 4.01895 4.09140 4.28368 4.40393 4.45163 4.51911 4.58354 4.60254 4.61298 4.71378 4.72442 4.72884 4.90685 5.00938 5.01782 5.08709 5.09925 5.10570 5.17196 5.22178 5.29702 5.44876 5.50693 5.55374 5.74158 6.16436 6.23036 6.83967 7.01874 7.07227 7.75998 8.39738 9.25157 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.003042 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.098991 B = 9202.238462 C =10313.583940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.134 3.866 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.091 0.909 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.982 3.018 11 H -0.273 1.273 12 H -0.299 1.299 13 H -0.275 1.275 14 C 0.187 3.813 15 C 0.135 3.865 16 H 0.087 0.913 17 N -0.674 5.674 18 C 0.615 3.385 19 O -0.546 6.546 20 C 0.117 3.883 21 N -0.265 5.265 22 N -0.055 5.055 23 N -0.109 5.109 24 C 0.158 3.842 25 C -0.149 4.149 26 C -0.156 4.156 27 C -0.160 4.160 28 N -0.258 5.258 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.243 0.757 35 H 0.016 0.984 36 H -0.003 1.003 37 H 0.418 0.582 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.131 0.869 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.132 0.868 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 11.320 19.194 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.110 0.890 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.810 3.190 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.201 1.201 14 C 0.060 3.940 15 C 0.030 3.970 16 H 0.105 0.895 17 N -0.326 5.326 18 C 0.395 3.605 19 O -0.420 6.420 20 C -0.167 4.167 21 N -0.140 5.140 22 N -0.048 5.048 23 N -0.026 5.026 24 C 0.080 3.920 25 C -0.207 4.207 26 C -0.214 4.214 27 C -0.218 4.218 28 N -0.112 5.112 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.015 0.985 37 H 0.256 0.744 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.150 0.850 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.221 10.919 19.618 25.099 hybrid contribution 1.336 -0.709 -0.899 1.760 sum -9.884 10.210 18.719 23.502 Atomic orbital electron populations 1.21665 0.91409 1.02592 1.03058 1.22610 0.97518 0.98983 0.92278 0.88984 1.21903 0.85150 0.95892 0.96193 1.44694 1.09758 1.79143 1.01762 1.19490 0.90099 1.37438 0.89889 0.89154 1.25748 1.00794 1.02459 0.97409 1.70233 1.24307 1.54642 1.11117 0.85105 0.78124 0.78390 0.77430 1.19827 1.22539 1.20138 1.21103 0.92216 0.96835 0.83820 1.22309 0.97247 0.93610 0.83815 0.89492 1.45478 1.71533 1.11799 1.03756 1.16304 0.77220 0.85399 0.81529 1.90829 1.50535 1.14736 1.85913 1.25027 1.07900 0.90721 0.93019 1.76088 1.16863 1.09579 1.11423 1.78766 1.15602 1.14805 0.95589 1.51349 1.39612 0.99688 1.11931 1.22262 1.00864 1.02228 0.66689 1.22180 1.04094 0.89712 1.04673 1.22306 0.93411 1.01234 1.04488 1.22329 0.94496 0.99420 1.05561 1.74961 1.18042 1.15711 1.02450 0.91613 0.90087 0.92527 0.92380 0.95138 0.94747 0.96572 0.98526 0.74404 0.90824 0.85282 0.91369 0.92003 0.85089 0.91602 0.92277 0.84960 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.32 71.98 0.67 -2.41 16 2 C -0.09 -3.04 3.27 -9.33 -0.03 -3.07 16 3 H 0.09 2.80 8.00 -2.39 -0.02 2.78 16 4 C 0.13 5.30 6.72 86.93 0.58 5.89 16 5 N -0.63 -33.10 3.40 -691.57 -2.35 -35.45 16 6 C -0.24 -13.77 10.28 84.03 0.86 -12.90 16 7 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 9 N -0.95 -60.86 10.31 21.65 0.22 -60.64 16 10 Si 0.98 47.33 29.55 68.60 2.03 49.35 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.19 9.92 5.13 86.73 0.44 10.36 16 15 C 0.14 5.39 2.74 46.18 0.13 5.51 16 16 H 0.09 3.60 7.52 -2.38 -0.02 3.58 16 17 N -0.67 -24.29 5.11 -439.63 -2.25 -26.54 16 18 C 0.61 24.28 7.84 86.83 0.68 24.96 16 19 O -0.55 -25.49 16.78 -3.83 -0.06 -25.55 16 20 C 0.12 4.09 8.14 137.15 1.12 5.20 16 21 N -0.27 -8.42 12.26 -52.36 -0.64 -9.06 16 22 N -0.06 -1.51 12.21 37.02 0.45 -1.06 16 23 N -0.11 -2.68 3.72 -152.26 -0.57 -3.25 16 24 C 0.16 2.18 1.30 3.60 0.00 2.18 16 25 C -0.15 -1.23 7.90 71.98 0.57 -0.66 16 26 C -0.16 -1.58 8.66 71.98 0.62 -0.95 16 27 C -0.16 -1.93 8.66 71.98 0.62 -1.30 16 28 N -0.26 -8.21 11.85 -52.32 -0.62 -8.83 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 1.19 7.99 -2.38 -0.02 1.17 16 34 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 36 H 0.00 -0.22 7.50 -2.39 -0.02 -0.24 16 37 H 0.42 13.00 8.29 -92.71 -0.77 12.23 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -81.13 380.43 3.17 -77.96 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.22 Total: 14.02 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 6.74 Total: 29.03 kcal Atomic # 7 Polarization: -139.07 SS G_CDS: -5.75 Total: -144.82 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -81.13 3.17 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079739982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.845 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds