Wall clock time and date at job start Fri Apr 10 2020 18:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.50693 * 109.46761 * 120.00195 * 2 1 3 5 5 N 1.31076 * 126.66040 * 299.97185 * 4 2 1 6 6 N 1.28846 * 107.98870 * 180.02562 * 5 4 2 7 7 N 1.28740 * 109.39612 * 359.97438 * 6 5 4 8 8 N 1.29009 * 108.81126 * 0.02562 * 7 6 5 9 9 C 1.46506 * 126.43900 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46817 * 270.03975 * 9 8 7 11 11 O 1.21283 * 120.00351 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99880 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.88851 * 31.13054 * 13 12 10 15 15 C 1.54913 * 111.00794 * 267.19921 * 13 12 10 16 16 N 1.47418 * 104.83088 * 204.91794 * 15 13 12 17 17 C 1.36936 * 125.64698 * 204.08507 * 16 15 13 18 18 H 1.08001 * 120.00624 * 170.00208 * 17 16 15 19 19 C 1.38819 * 119.99944 * 349.99629 * 17 16 15 20 20 N 1.31619 * 119.99880 * 350.42138 * 19 17 16 21 21 Si 1.86799 * 119.99864 * 170.42234 * 19 17 16 22 22 H 1.48496 * 109.47227 * 94.14291 * 21 19 17 23 23 H 1.48506 * 109.46830 * 214.14202 * 21 19 17 24 24 H 1.48499 * 109.47174 * 334.13626 * 21 19 17 25 25 C 1.47024 * 108.70840 * 24.12781 * 16 15 13 26 26 C 1.54322 * 107.26926 * 358.94315 * 25 16 15 27 27 H 1.08998 * 110.72040 * 96.16400 * 26 25 16 28 28 C 1.53000 * 110.72098 * 219.44024 * 26 25 16 29 29 H 1.08994 * 109.46994 * 300.00119 * 1 2 3 30 30 H 1.09004 * 109.46532 * 59.99590 * 1 2 3 31 31 H 1.08991 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47072 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47267 * 299.99807 * 3 2 1 35 35 H 1.09003 * 109.47102 * 60.00088 * 3 2 1 36 36 H 1.09002 * 109.47114 * 30.03444 * 9 8 7 37 37 H 1.09001 * 109.47325 * 150.03996 * 9 8 7 38 38 H 0.97001 * 120.00433 * 0.02562 * 12 10 9 39 39 H 1.08996 * 110.36697 * 323.75651 * 15 13 12 40 40 H 1.09002 * 110.36285 * 86.08161 * 15 13 12 41 41 H 0.97000 * 119.99627 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.88498 * 239.52455 * 25 16 15 43 43 H 1.09007 * 109.88104 * 118.35408 * 25 16 15 44 44 H 1.08997 * 109.47101 * 173.51915 * 28 26 25 45 45 H 1.09001 * 109.46972 * 293.52083 * 28 26 25 46 46 H 1.09001 * 109.46721 * 53.52354 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7978 -0.3781 2.4765 6 7 2.3994 -1.2284 3.2350 7 7 3.0110 -2.0947 2.5051 8 7 2.8089 -1.8093 1.2633 9 6 3.3274 -2.5432 0.1061 10 6 4.6658 -1.9752 -0.2903 11 8 5.1397 -1.0484 0.3321 12 7 5.3362 -2.4973 -1.3364 13 6 6.6370 -1.9448 -1.7222 14 1 7.1683 -1.5580 -0.8526 15 6 6.4762 -0.8512 -2.8075 16 7 7.7682 -0.8308 -3.5170 17 6 8.2778 0.2303 -4.2166 18 1 9.2995 0.2064 -4.5659 19 6 7.4812 1.3370 -4.4770 20 7 6.1908 1.2936 -4.2215 21 14 8.2406 2.8875 -5.1901 22 1 8.1115 2.8669 -6.6692 23 1 7.5368 4.0777 -4.6483 24 1 9.6772 2.9507 -4.8193 25 6 8.4186 -2.1387 -3.3501 26 6 7.4909 -3.0027 -2.4701 27 1 6.8593 -3.6418 -3.0872 28 6 8.3064 -3.8379 -1.4810 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.4417 -3.5959 0.3650 37 1 2.6309 -2.4474 -0.7268 38 1 4.9571 -3.2383 -1.8345 39 1 5.6708 -1.1132 -3.4936 40 1 6.2820 0.1165 -2.3450 41 1 5.6341 2.0667 -4.4038 42 1 9.3836 -2.0129 -2.8592 43 1 8.5539 -2.6123 -4.3225 44 1 7.6315 -4.3507 -0.7956 45 1 8.8974 -4.5731 -2.0270 46 1 8.9711 -3.1847 -0.9156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080581555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:15 Heat of formation + Delta-G solvation = 100.157530 kcal Electronic energy + Delta-G solvation = -28251.983614 eV Core-core repulsion = 24408.110590 eV Total energy + Delta-G solvation = -3843.873024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.19835 -39.95085 -37.84391 -36.24879 -35.38154 -34.21271 -32.84877 -31.50053 -30.50627 -29.62914 -27.55426 -27.33416 -25.76627 -24.46897 -24.00424 -23.16202 -21.29438 -20.62162 -20.37200 -19.78870 -17.90375 -17.80191 -16.98910 -16.31396 -16.04779 -15.63299 -15.41797 -14.90695 -14.62972 -14.17310 -13.88325 -13.51593 -13.39628 -13.19202 -13.07270 -12.92916 -12.64395 -12.40020 -12.33024 -12.18371 -11.80968 -11.78132 -11.47530 -11.46746 -11.35273 -11.31560 -11.11822 -10.96398 -10.90781 -10.79894 -10.53367 -10.09565 -10.07323 -10.03544 -9.88612 -9.78579 -8.80871 -8.65912 -6.91357 -5.83696 -3.16897 1.15839 1.75377 2.27361 2.40330 3.04814 3.35165 3.41775 3.43478 3.78656 4.01775 4.32677 4.36853 4.44631 4.50616 4.80806 4.91302 4.94430 5.06497 5.16715 5.28043 5.38908 5.42662 5.48240 5.56054 5.60376 5.67610 5.74654 5.77131 5.80538 5.86545 5.98643 6.00930 6.04559 6.07548 6.22757 6.23821 6.29426 6.50137 6.56946 6.78777 7.21183 7.45120 7.50387 7.68928 8.08015 8.16726 8.61876 9.09333 9.71621 10.36443 11.29236 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003952 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.703152 B = 7082.538875 C = 8769.290044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 C -0.144 4.144 4 C 0.208 3.792 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.089 5.089 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.498 3.502 11 O -0.515 6.515 12 N -0.702 5.702 13 C 0.116 3.884 14 H 0.095 0.905 15 C 0.171 3.829 16 N -0.601 5.601 17 C -0.233 4.233 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.140 3.860 26 C -0.109 4.109 27 H 0.076 0.924 28 C -0.138 4.138 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.399 0.601 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -10.989 4.172 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.070 4.070 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.074 5.074 8 N -0.094 5.094 9 C -0.035 4.035 10 C 0.280 3.720 11 O -0.389 6.389 12 N -0.353 5.353 13 C 0.012 3.988 14 H 0.113 0.887 15 C 0.045 3.955 16 N -0.328 5.328 17 C -0.361 4.361 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.014 3.986 26 C -0.129 4.129 27 H 0.094 0.906 28 C -0.196 4.196 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.233 0.767 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.424 -10.268 5.998 15.173 hybrid contribution 0.309 0.293 -1.742 1.794 sum -9.116 -9.975 4.255 14.167 Atomic orbital electron populations 1.21845 0.92087 1.02426 1.03690 1.19823 0.97106 0.96918 0.89516 1.21824 1.02488 0.92696 1.03223 1.26123 0.94518 0.88404 0.97989 1.74941 1.20944 1.20798 0.98385 1.78570 1.06888 0.99031 1.22512 1.78838 1.19149 1.22166 0.87283 1.47831 1.33761 1.20998 1.06787 1.22023 0.96641 0.98451 0.86362 1.20157 0.86092 0.84188 0.81552 1.90848 1.67867 1.27487 1.52705 1.45734 1.21704 1.36627 1.31186 1.22807 0.81190 0.95542 0.99297 0.88743 1.21664 0.88203 0.95846 0.89792 1.44333 1.19418 1.09015 1.59998 1.19017 0.95547 0.93425 1.28134 0.90437 1.24816 0.95359 0.99024 1.00862 1.69928 1.03368 1.29722 1.53316 0.86133 0.78408 0.82901 0.78499 1.21536 1.21517 1.20503 1.21368 0.94563 0.86712 0.95957 1.22423 0.97478 0.96144 0.96826 0.90551 1.21752 0.99704 0.99549 0.98597 0.91056 0.90696 0.92568 0.88912 0.91490 0.90692 0.91339 0.84175 0.84340 0.76692 0.95286 0.90846 0.93655 0.95361 0.95612 0.93090 0.92656 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 2 C -0.01 -0.12 3.26 -91.77 -0.30 -0.42 16 3 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 4 C 0.21 2.82 6.64 -155.43 -1.03 1.79 16 5 N -0.30 -4.85 12.36 32.70 0.40 -4.45 16 6 N -0.08 -1.31 13.43 60.35 0.81 -0.50 16 7 N -0.09 -1.41 13.29 60.35 0.80 -0.60 16 8 N -0.29 -3.87 2.83 -59.44 -0.17 -4.04 16 9 C 0.09 0.82 6.57 -5.19 -0.03 0.79 16 10 C 0.50 6.77 7.90 -10.99 -0.09 6.68 16 11 O -0.51 -9.93 16.07 5.56 0.09 -9.84 16 12 N -0.70 -8.75 5.20 -51.72 -0.27 -9.02 16 13 C 0.12 1.98 2.87 -65.77 -0.19 1.79 16 14 H 0.09 1.85 7.44 -51.93 -0.39 1.46 16 15 C 0.17 3.86 5.11 -2.53 -0.01 3.85 16 16 N -0.60 -14.63 3.39 -170.07 -0.58 -15.21 16 17 C -0.23 -6.32 10.24 -15.06 -0.15 -6.47 16 18 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 19 C 0.00 -0.10 5.40 -17.43 -0.09 -0.19 16 20 N -0.92 -25.99 10.68 55.49 0.59 -25.40 16 21 Si 0.91 21.67 29.56 -169.99 -5.03 16.64 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.14 2.69 6.84 -3.06 -0.02 2.67 16 26 C -0.11 -1.61 3.20 -88.78 -0.28 -1.90 16 27 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 28 C -0.14 -1.69 9.16 37.16 0.34 -1.35 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.84 6.85 -51.93 -0.36 0.48 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.14 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.14 0.70 7.13 -51.93 -0.37 0.33 16 38 H 0.40 3.35 8.57 -40.82 -0.35 3.01 16 39 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.07 1.97 6.94 -51.93 -0.36 1.61 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.54 7.76 -51.93 -0.40 0.14 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -35.89 380.08 -6.05 -41.94 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.25 Total: -0.28 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.18 Total: 5.02 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 1.59 Total: -59.21 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.89 -6.05 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080581555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.096 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds