Wall clock time and date at job start Fri Apr 10 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.50693 * 109.46761 * 120.00195 * 2 1 3 5 5 N 1.31076 * 126.66040 * 299.97185 * 4 2 1 6 6 N 1.28846 * 107.98870 * 180.02562 * 5 4 2 7 7 N 1.28740 * 109.39612 * 359.97438 * 6 5 4 8 8 N 1.29009 * 108.81126 * 0.02562 * 7 6 5 9 9 C 1.46506 * 126.43900 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46817 * 270.03975 * 9 8 7 11 11 O 1.21283 * 120.00351 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99880 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.88851 * 31.13054 * 13 12 10 15 15 C 1.54913 * 111.00794 * 267.19921 * 13 12 10 16 16 N 1.47418 * 104.83088 * 204.91794 * 15 13 12 17 17 C 1.36936 * 125.64698 * 204.08507 * 16 15 13 18 18 H 1.08001 * 120.00624 * 170.00208 * 17 16 15 19 19 C 1.38819 * 119.99944 * 349.99629 * 17 16 15 20 20 N 1.31619 * 119.99880 * 350.42138 * 19 17 16 21 21 Si 1.86799 * 119.99864 * 170.42234 * 19 17 16 22 22 H 1.48496 * 109.47227 * 94.14291 * 21 19 17 23 23 H 1.48506 * 109.46830 * 214.14202 * 21 19 17 24 24 H 1.48499 * 109.47174 * 334.13626 * 21 19 17 25 25 C 1.47024 * 108.70840 * 24.12781 * 16 15 13 26 26 C 1.54322 * 107.26926 * 358.94315 * 25 16 15 27 27 H 1.08998 * 110.72040 * 96.16400 * 26 25 16 28 28 C 1.53000 * 110.72098 * 219.44024 * 26 25 16 29 29 H 1.08994 * 109.46994 * 300.00119 * 1 2 3 30 30 H 1.09004 * 109.46532 * 59.99590 * 1 2 3 31 31 H 1.08991 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47072 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47267 * 299.99807 * 3 2 1 35 35 H 1.09003 * 109.47102 * 60.00088 * 3 2 1 36 36 H 1.09002 * 109.47114 * 30.03444 * 9 8 7 37 37 H 1.09001 * 109.47325 * 150.03996 * 9 8 7 38 38 H 0.97001 * 120.00433 * 0.02562 * 12 10 9 39 39 H 1.08996 * 110.36697 * 323.75651 * 15 13 12 40 40 H 1.09002 * 110.36285 * 86.08161 * 15 13 12 41 41 H 0.97000 * 119.99627 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.88498 * 239.52455 * 25 16 15 43 43 H 1.09007 * 109.88104 * 118.35408 * 25 16 15 44 44 H 1.08997 * 109.47101 * 173.51915 * 28 26 25 45 45 H 1.09001 * 109.46972 * 293.52083 * 28 26 25 46 46 H 1.09001 * 109.46721 * 53.52354 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7978 -0.3781 2.4765 6 7 2.3994 -1.2284 3.2350 7 7 3.0110 -2.0947 2.5051 8 7 2.8089 -1.8093 1.2633 9 6 3.3274 -2.5432 0.1061 10 6 4.6658 -1.9752 -0.2903 11 8 5.1397 -1.0484 0.3321 12 7 5.3362 -2.4973 -1.3364 13 6 6.6370 -1.9448 -1.7222 14 1 7.1683 -1.5580 -0.8526 15 6 6.4762 -0.8512 -2.8075 16 7 7.7682 -0.8308 -3.5170 17 6 8.2778 0.2303 -4.2166 18 1 9.2995 0.2064 -4.5659 19 6 7.4812 1.3370 -4.4770 20 7 6.1908 1.2936 -4.2215 21 14 8.2406 2.8875 -5.1901 22 1 8.1115 2.8669 -6.6692 23 1 7.5368 4.0777 -4.6483 24 1 9.6772 2.9507 -4.8193 25 6 8.4186 -2.1387 -3.3501 26 6 7.4909 -3.0027 -2.4701 27 1 6.8593 -3.6418 -3.0872 28 6 8.3064 -3.8379 -1.4810 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.4417 -3.5959 0.3650 37 1 2.6309 -2.4474 -0.7268 38 1 4.9571 -3.2383 -1.8345 39 1 5.6708 -1.1132 -3.4936 40 1 6.2820 0.1165 -2.3450 41 1 5.6341 2.0667 -4.4038 42 1 9.3836 -2.0129 -2.8592 43 1 8.5539 -2.6123 -4.3225 44 1 7.6315 -4.3507 -0.7956 45 1 8.8974 -4.5731 -2.0270 46 1 8.9711 -3.1847 -0.9156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080581555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:14 Heat of formation + Delta-G solvation = 73.348703 kcal Electronic energy + Delta-G solvation = -28253.146132 eV Core-core repulsion = 24408.110590 eV Total energy + Delta-G solvation = -3845.035542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.29689 -41.17612 -39.30693 -37.17623 -36.44945 -35.73516 -34.41019 -32.56822 -32.20423 -30.75593 -29.02400 -28.14404 -27.38701 -25.52701 -25.45105 -24.39905 -22.62697 -21.79118 -21.67587 -21.10395 -18.98870 -18.94221 -18.76946 -17.50820 -17.23183 -16.88022 -16.66759 -16.37636 -15.69964 -15.54996 -15.37513 -14.56215 -14.55766 -14.43888 -14.25848 -14.21986 -14.02615 -13.72551 -13.30047 -13.21456 -13.12515 -13.05595 -12.88239 -12.70176 -12.65900 -12.50611 -12.33513 -12.29907 -12.24355 -12.10614 -11.91560 -11.87306 -11.70325 -11.48167 -11.22051 -10.95921 -10.71566 -10.12390 -8.87984 -7.91273 -5.25293 0.07415 0.84255 1.12411 1.34532 1.43359 1.45841 1.54103 1.98255 2.47372 2.86031 3.14597 3.28753 3.38130 3.59874 3.63110 3.80371 3.89429 3.99037 4.01183 4.03460 4.06460 4.19142 4.36339 4.49510 4.58900 4.62973 4.64320 4.73875 4.79019 4.88937 4.89814 4.94332 5.02014 5.07912 5.12553 5.14492 5.23206 5.26959 5.33792 5.41968 5.48419 5.54903 5.71273 6.17554 6.39587 7.04323 7.10536 7.47642 7.73732 8.37722 9.19890 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003952 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.703152 B = 7082.538875 C = 8769.290044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.099 5.099 8 N -0.291 5.291 9 C 0.091 3.909 10 C 0.497 3.503 11 O -0.579 6.579 12 N -0.683 5.683 13 C 0.136 3.864 14 H 0.065 0.935 15 C 0.182 3.818 16 N -0.626 5.626 17 C -0.248 4.248 18 H 0.079 0.921 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.272 1.272 25 C 0.131 3.869 26 C -0.090 4.090 27 H 0.108 0.892 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.027 0.973 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.425 0.575 39 H 0.015 0.985 40 H 0.017 0.983 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -13.763 2.895 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.069 4.069 5 N -0.176 5.176 6 N -0.101 5.101 7 N -0.085 5.085 8 N -0.091 5.091 9 C -0.032 4.032 10 C 0.282 3.718 11 O -0.458 6.458 12 N -0.336 5.336 13 C 0.029 3.971 14 H 0.083 0.917 15 C 0.056 3.944 16 N -0.353 5.353 17 C -0.377 4.377 18 H 0.097 0.903 19 C -0.252 4.252 20 N -0.590 5.590 21 Si 0.799 3.201 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.197 1.197 25 C 0.006 3.994 26 C -0.109 4.109 27 H 0.126 0.874 28 C -0.189 4.189 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.046 0.954 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.204 0.796 37 H 0.206 0.794 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.319 -13.124 4.695 17.343 hybrid contribution 0.662 1.169 -1.394 1.936 sum -9.657 -11.954 3.302 15.719 Atomic orbital electron populations 1.21829 0.89770 1.03641 1.04130 1.20050 0.98873 0.95464 0.88903 1.21792 0.99865 0.94430 1.03942 1.26645 0.93835 0.88268 0.98118 1.74857 1.21864 1.21280 0.99628 1.78528 1.08041 0.99896 1.23596 1.78726 1.19052 1.22282 0.88434 1.48091 1.33117 1.21044 1.06896 1.22531 0.94411 0.99699 0.86581 1.20957 0.87272 0.82999 0.80608 1.90845 1.69731 1.30439 1.54784 1.45428 1.20145 1.36822 1.31175 1.22179 0.83486 0.94936 0.96487 0.91698 1.21370 0.87375 0.95142 0.90522 1.44628 1.20230 1.10559 1.59855 1.19378 0.95788 0.94726 1.27807 0.90326 1.25580 0.95893 1.01730 1.02014 1.70108 1.04359 1.29971 1.54541 0.85194 0.77803 0.79168 0.77968 1.20725 1.22257 1.19704 1.21624 0.95285 0.85287 0.97220 1.22368 0.96707 0.95234 0.96574 0.87431 1.21711 0.99716 0.99243 0.98230 0.92237 0.88643 0.90967 0.86763 0.95390 0.88797 0.91851 0.79646 0.79425 0.73625 0.96690 0.96404 0.94301 0.95523 0.94936 0.90875 0.90382 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.01 -0.22 3.26 -11.54 -0.04 -0.26 16 3 C -0.14 -3.44 9.18 71.98 0.66 -2.78 16 4 C 0.21 5.51 6.64 138.13 0.92 6.43 16 5 N -0.33 -10.63 12.36 -50.45 -0.62 -11.25 16 6 N -0.11 -3.73 13.43 37.01 0.50 -3.23 16 7 N -0.10 -3.06 13.29 37.02 0.49 -2.57 16 8 N -0.29 -7.18 2.83 -341.96 -0.97 -8.15 16 9 C 0.09 1.31 6.57 85.63 0.56 1.87 16 10 C 0.50 12.69 7.90 87.66 0.69 13.39 16 11 O -0.58 -22.87 16.07 -3.04 -0.05 -22.91 16 12 N -0.68 -15.40 5.20 -435.94 -2.27 -17.67 16 13 C 0.14 4.53 2.87 46.39 0.13 4.66 16 14 H 0.06 2.60 7.44 -2.39 -0.02 2.58 16 15 C 0.18 8.45 5.11 86.86 0.44 8.89 16 16 N -0.63 -31.01 3.39 -691.99 -2.35 -33.36 16 17 C -0.25 -13.73 10.24 84.04 0.86 -12.87 16 18 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 19 C -0.06 -3.27 5.40 84.86 0.46 -2.81 16 20 N -0.94 -55.25 10.68 21.65 0.23 -55.01 16 21 Si 0.97 45.44 29.56 68.60 2.03 47.46 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 C 0.13 4.90 6.84 86.73 0.59 5.49 16 26 C -0.09 -2.41 3.20 -9.60 -0.03 -2.44 16 27 H 0.11 2.29 8.00 -2.39 -0.02 2.27 16 28 C -0.13 -2.76 9.16 71.98 0.66 -2.10 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.73 6.85 -2.39 -0.02 1.71 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.19 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.19 0.87 7.13 -2.39 -0.02 0.85 16 38 H 0.42 5.23 8.57 -92.71 -0.79 4.44 16 39 H 0.02 0.73 8.07 -2.39 -0.02 0.71 16 40 H 0.02 1.00 6.94 -2.39 -0.02 0.99 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.03 1.00 7.76 -2.39 -0.02 0.99 16 43 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.04 1.00 8.06 -2.39 -0.02 0.99 16 Total: -1.00 -86.35 380.08 3.76 -82.59 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.19 Total: 7.86 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.57 Total: 16.25 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -4.99 Total: -131.25 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -86.35 3.76 -82.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080581555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.942 kcal (2) G-P(sol) polarization free energy of solvation -86.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds