Wall clock time and date at job start Fri Apr 10 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46789 * 274.98659 * 3 2 1 5 5 H 1.48501 * 109.46936 * 34.98804 * 3 2 1 6 6 H 1.48500 * 109.47312 * 154.98871 * 3 2 1 7 7 C 1.38816 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99669 * 187.04901 * 7 2 1 9 9 N 1.36934 * 120.00068 * 7.05543 * 7 2 1 10 10 C 1.47467 * 125.62767 * 174.80768 * 9 7 2 11 11 C 1.54914 * 104.81169 * 204.04707 * 10 9 7 12 12 H 1.08995 * 111.00489 * 81.13522 * 11 10 9 13 13 N 1.46500 * 111.00509 * 204.95000 * 11 10 9 14 14 C 1.34776 * 119.99929 * 270.41695 * 13 11 10 15 15 O 1.21282 * 119.99976 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99845 * 180.02562 * 14 13 11 17 17 C 1.50228 * 117.30465 * 180.02562 * 16 14 13 18 18 H 1.09005 * 113.56117 * 213.87822 * 17 16 14 19 19 C 1.48767 * 129.35994 * 7.02328 * 17 16 14 20 20 C 1.54163 * 112.51045 * 132.57887 * 19 17 16 21 21 C 1.54367 * 109.22860 * 296.02905 * 20 19 17 22 22 C 1.51294 * 111.05554 * 100.93658 * 21 20 19 23 23 C 1.49152 * 120.91814 * 324.81925 * 22 21 20 24 24 C 1.54821 * 109.53614 * 277.93726 * 23 22 21 25 25 C 1.48387 * 116.46235 * 251.07463 * 16 14 13 26 26 H 1.09000 * 117.19092 * 358.94107 * 25 16 14 27 27 C 1.55157 * 101.61104 * 323.04335 * 11 10 9 28 28 H 1.09002 * 110.71708 * 153.84682 * 27 11 10 29 29 O 1.42900 * 110.71924 * 277.11464 * 27 11 10 30 30 C 1.47018 * 125.64922 * 354.78052 * 9 7 2 31 31 H 0.96997 * 119.99966 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.34745 * 85.23032 * 10 9 7 33 33 H 1.08998 * 110.40962 * 322.89479 * 10 9 7 34 34 H 0.97002 * 119.99741 * 90.41530 * 13 11 10 35 35 H 1.08997 * 115.33366 * 35.34490 * 16 14 13 36 36 H 1.09000 * 108.87427 * 11.79382 * 19 17 16 37 37 H 1.09002 * 108.79203 * 253.30271 * 19 17 16 38 38 H 1.08999 * 109.52260 * 55.97269 * 20 19 17 39 39 H 1.09008 * 109.52039 * 176.09162 * 20 19 17 40 40 H 1.09000 * 109.16434 * 221.44897 * 21 20 19 41 41 H 1.08997 * 109.15885 * 340.62794 * 21 20 19 42 42 H 1.08994 * 107.14835 * 201.84245 * 22 21 20 43 43 H 1.08997 * 107.03534 * 87.67972 * 22 21 20 44 44 H 1.09004 * 109.45428 * 157.92188 * 23 22 21 45 45 H 1.08991 * 109.45039 * 37.95539 * 23 22 21 46 46 H 1.08999 * 110.86155 * 298.17510 * 24 23 22 47 47 H 1.09000 * 110.89516 * 174.71916 * 24 23 22 48 48 H 0.96705 * 113.99707 * 180.02562 * 29 27 11 49 49 H 1.08993 * 109.88248 * 59.58130 * 30 9 7 50 50 H 1.09000 * 109.88022 * 298.41308 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0842 -1.2056 0.1153 9 7 1.3333 -2.3836 -0.1446 10 6 1.9501 -3.7173 -0.2697 11 6 0.8910 -4.5760 -1.0051 12 1 0.9253 -4.4021 -2.0805 13 7 1.0645 -5.9984 -0.7002 14 6 1.8714 -6.7583 -1.4670 15 8 2.4542 -6.2646 -2.4090 16 6 2.0494 -8.2216 -1.1537 17 6 2.9630 -9.0115 -2.0472 18 1 2.6474 -10.0452 -2.1888 19 6 3.8521 -8.5387 -3.1423 20 6 5.2717 -9.1325 -3.0479 21 6 5.9445 -8.6376 -1.7497 22 6 5.8975 -9.7004 -0.6739 23 6 4.7260 -10.6153 -0.5511 24 6 3.5945 -9.9055 0.2317 25 6 3.3676 -8.6246 -0.6042 26 1 4.1168 -7.8423 -0.4828 27 6 -0.4287 -4.0335 -0.3957 28 1 -1.2592 -4.1739 -1.0876 29 8 -0.7021 -4.6615 0.8585 30 6 -0.1282 -2.5325 -0.2009 31 1 -0.4850 0.8400 0.0004 32 1 2.1574 -4.1330 0.7163 33 1 2.8660 -3.6588 -0.8578 34 1 0.5987 -6.3932 0.0535 35 1 1.1632 -8.7279 -0.7712 36 1 3.9207 -7.4519 -3.0964 37 1 3.4135 -8.8239 -4.0985 38 1 5.2112 -10.2208 -3.0348 39 1 5.8590 -8.8108 -3.9080 40 1 6.9837 -8.3843 -1.9594 41 1 5.4251 -7.7477 -1.3944 42 1 6.0106 -9.1931 0.2842 43 1 6.7809 -10.3255 -0.8038 44 1 5.0248 -11.5183 -0.0186 45 1 4.3679 -10.8818 -1.5454 46 1 3.9183 -9.6573 1.2424 47 1 2.6936 -10.5187 0.2545 48 1 -1.5170 -4.3575 1.2812 49 1 -0.5268 -1.9627 -1.0402 50 1 -0.5725 -2.1835 0.7313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083808642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:20 Heat of formation + Delta-G solvation = -56.837535 kcal Electronic energy + Delta-G solvation = -28623.585060 eV Core-core repulsion = 24844.151811 eV Total energy + Delta-G solvation = -3779.433249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86477 -40.33729 -39.02427 -36.47760 -35.80518 -35.40997 -33.96920 -33.57432 -30.47673 -29.52212 -28.69369 -26.91691 -26.55004 -24.71889 -22.84391 -22.29271 -21.56752 -21.50437 -20.87506 -20.20697 -19.16808 -18.37138 -17.75990 -17.03305 -16.80447 -16.28272 -16.08669 -15.81261 -15.66170 -15.35271 -15.19812 -14.78458 -14.69156 -14.51566 -14.32710 -14.27426 -13.96882 -13.83020 -13.21905 -13.12933 -12.82987 -12.81249 -12.72520 -12.31732 -12.27287 -12.12267 -12.11489 -12.06723 -11.92819 -11.90319 -11.68037 -11.29025 -11.15363 -10.89076 -10.77355 -10.71196 -10.50305 -10.11505 -10.05127 -8.97423 -7.92519 -5.27255 1.43091 1.45607 1.52088 1.54364 2.09860 2.46905 2.77977 3.16321 3.27282 3.53736 3.62254 3.76608 3.83979 3.91311 3.95047 4.00393 4.04451 4.13982 4.23943 4.24935 4.27795 4.42272 4.48527 4.60938 4.64830 4.66327 4.72759 4.79717 4.93466 4.99331 5.00358 5.05536 5.06656 5.18358 5.22877 5.24032 5.31306 5.34470 5.42207 5.42969 5.48109 5.49241 5.61306 5.61849 5.64108 5.75732 6.11900 6.64548 6.86803 7.03888 7.32870 7.67840 8.32187 9.17895 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.002989 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.209595 B = 9365.054194 C =10104.574604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.135 3.865 11 C 0.152 3.848 12 H 0.088 0.912 13 N -0.694 5.694 14 C 0.530 3.470 15 O -0.576 6.576 16 C -0.145 4.145 17 C -0.128 4.128 18 H 0.121 0.879 19 C -0.099 4.099 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.079 4.079 25 C -0.138 4.138 26 H 0.093 0.907 27 C 0.094 3.906 28 H 0.091 0.909 29 O -0.563 6.563 30 C 0.159 3.841 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.418 0.582 35 H 0.153 0.847 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.398 0.602 49 H 0.026 0.974 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -25.235 -0.593 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.008 3.992 11 C 0.045 3.955 12 H 0.106 0.894 13 N -0.346 5.346 14 C 0.318 3.682 15 O -0.455 6.455 16 C -0.166 4.166 17 C -0.146 4.146 18 H 0.139 0.861 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.116 4.116 25 C -0.156 4.156 26 H 0.111 0.889 27 C 0.033 3.967 28 H 0.109 0.891 29 O -0.372 6.372 30 C 0.033 3.967 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.256 0.744 35 H 0.171 0.829 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.249 0.751 49 H 0.044 0.956 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.255 -24.992 -1.363 25.388 hybrid contribution -0.337 2.008 0.386 2.072 sum 3.918 -22.984 -0.977 23.336 Atomic orbital electron populations 1.70115 1.06064 1.25596 1.57572 1.25620 0.96740 1.00772 1.01990 0.85066 0.77808 0.79082 0.77408 1.21300 1.21484 1.19615 1.19403 0.91511 0.83882 1.43132 0.90723 1.44572 1.02559 1.01598 1.86133 1.21851 0.95092 0.85725 0.96550 1.21881 0.94192 0.80729 0.98666 0.89433 1.45654 1.47790 1.08197 1.32937 1.20615 0.77594 0.88670 0.81344 1.90638 1.48372 1.75241 1.31284 1.21370 0.98649 0.90752 1.05843 1.21094 1.00483 0.99830 0.93226 0.86138 1.20528 0.94677 1.01479 0.96986 1.21915 0.94104 1.01136 0.97023 1.21626 0.99978 0.98379 0.95748 1.20345 0.99265 0.97352 0.98259 1.21282 0.94798 0.97687 1.01261 1.22038 0.99624 0.92477 0.97455 1.22643 0.94797 1.00442 0.97763 0.88929 1.23105 0.95875 0.91520 0.86186 0.89100 1.86216 1.49191 1.66583 1.35192 1.21733 0.84171 0.91708 0.99046 0.94032 0.95998 0.95742 0.74392 0.82943 0.92647 0.92629 0.90152 0.92211 0.92242 0.93826 0.93594 0.92592 0.90415 0.90707 0.90953 0.89390 0.75071 0.95591 0.95661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 10.36 21.65 0.22 -56.04 16 2 C -0.06 -3.33 5.48 84.86 0.46 -2.87 16 3 Si 0.98 46.58 29.56 68.60 2.03 48.61 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.25 -14.69 10.26 84.03 0.86 -13.83 16 8 H 0.07 4.30 7.84 -2.91 -0.02 4.27 16 9 N -0.62 -33.43 3.40 -691.90 -2.35 -35.78 16 10 C 0.13 6.20 6.92 86.85 0.60 6.80 16 11 C 0.15 5.74 3.25 46.38 0.15 5.89 16 12 H 0.09 3.60 7.63 -2.39 -0.02 3.59 16 13 N -0.69 -20.83 5.18 -435.96 -2.26 -23.08 16 14 C 0.53 16.08 7.51 87.66 0.66 16.74 16 15 O -0.58 -22.23 13.67 -3.04 -0.04 -22.27 16 16 C -0.15 -3.02 5.82 -13.89 -0.08 -3.10 16 17 C -0.13 -2.47 3.78 -12.42 -0.05 -2.52 16 18 H 0.12 1.73 7.30 -2.38 -0.02 1.72 16 19 C -0.10 -2.28 5.10 29.65 0.15 -2.13 16 20 C -0.10 -1.92 5.68 31.45 0.18 -1.74 16 21 C -0.12 -2.32 5.39 30.50 0.16 -2.15 16 22 C -0.11 -1.74 4.44 28.81 0.13 -1.61 16 23 C -0.11 -1.35 5.43 29.99 0.16 -1.19 16 24 C -0.08 -1.01 6.19 31.77 0.20 -0.81 16 25 C -0.14 -2.64 4.00 -11.09 -0.04 -2.68 16 26 H 0.09 2.30 5.47 -2.39 -0.01 2.29 16 27 C 0.09 3.29 4.20 31.78 0.13 3.43 16 28 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 29 O -0.56 -16.73 12.13 -148.98 -1.81 -18.54 16 30 C 0.16 7.68 5.15 86.73 0.45 8.12 16 31 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.42 10.60 7.57 -92.71 -0.70 9.90 16 35 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.73 5.50 -2.39 -0.01 1.72 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.17 6.32 -2.39 -0.02 1.16 16 39 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 1.07 5.23 -2.39 -0.01 1.06 16 42 H 0.05 0.75 7.84 -2.39 -0.02 0.73 16 43 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 44 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.07 0.87 4.60 -2.39 -0.01 0.86 16 46 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 47 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.40 8.79 9.12 -74.05 -0.68 8.12 16 49 H 0.03 1.40 7.30 -2.39 -0.02 1.38 16 50 H 0.03 1.33 7.54 -2.39 -0.02 1.31 16 Total: -1.00 -72.24 371.31 -0.49 -72.73 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.42 Total: 28.03 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.13 Total: 6.34 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.38 Total: -114.90 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.85 Total: -40.81 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -72.24 -0.49 -72.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083808642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.892 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds