Wall clock time and date at job start Fri Apr 10 2020 18:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 11 11 C 1.54321 * 107.26694 * 181.02527 * 10 9 7 12 12 H 1.09000 * 110.72011 * 140.55689 * 11 10 9 13 13 N 1.46505 * 110.71513 * 263.82329 * 11 10 9 14 14 C 1.34778 * 120.00483 * 273.54924 * 13 11 10 15 15 O 1.21282 * 119.99617 * 359.97438 * 14 13 11 16 16 C 1.50758 * 119.99744 * 180.02562 * 14 13 11 17 17 H 1.08490 * 115.74216 * 34.08952 * 16 14 13 18 18 C 1.53430 * 117.06356 * 180.02562 * 16 14 13 19 19 H 1.10829 * 115.47986 * 359.43312 * 18 16 14 20 20 C 1.52810 * 116.89401 * 221.24049 * 18 16 14 21 21 C 1.52674 * 109.21604 * 215.88392 * 20 18 16 22 22 C 1.52313 * 111.50938 * 83.06742 * 21 20 18 23 23 C 1.52485 * 116.46836 * 31.70868 * 22 21 20 24 24 C 1.53757 * 112.90693 * 289.73940 * 23 22 21 25 25 C 1.53929 * 108.49880 * 325.98111 * 24 23 22 26 26 C 1.51122 * 60.45193 * 107.17971 * 18 16 14 27 27 H 1.11439 * 117.16202 * 254.62765 * 26 18 16 28 28 C 1.55153 * 102.94671 * 22.18991 * 11 10 9 29 29 H 1.08995 * 111.00035 * 82.61365 * 28 11 10 30 30 O 1.42894 * 111.00557 * 206.42440 * 28 11 10 31 31 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.87851 * 300.43791 * 10 9 7 34 34 H 1.08997 * 109.88162 * 61.45022 * 10 9 7 35 35 H 0.97006 * 119.99802 * 93.55629 * 13 11 10 36 36 H 1.07881 * 113.61040 * 340.89956 * 20 18 16 37 37 H 1.10811 * 108.16247 * 98.79240 * 20 18 16 38 38 H 1.09171 * 109.32370 * 321.90964 * 21 20 18 39 39 H 1.09270 * 108.95755 * 203.28992 * 21 20 18 40 40 H 1.08494 * 108.72056 * 265.95530 * 22 21 20 41 41 H 1.09998 * 106.85269 * 151.87060 * 22 21 20 42 42 H 1.09472 * 108.96632 * 168.47176 * 23 22 21 43 43 H 1.09628 * 109.02531 * 51.35226 * 23 22 21 44 44 H 1.10759 * 108.14349 * 208.18698 * 24 23 22 45 45 H 1.08290 * 112.57187 * 90.99075 * 24 23 22 46 46 H 1.08909 * 111.51040 * 340.31291 * 25 24 23 47 47 H 1.11418 * 107.33575 * 225.80219 * 25 24 23 48 48 H 0.96697 * 114.00570 * 180.02562 * 30 28 11 49 49 H 1.08994 * 110.36510 * 274.74946 * 31 9 7 50 50 H 1.09001 * 110.36249 * 37.07349 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9319 -3.7275 0.0005 11 6 0.7785 -4.7524 -0.0258 12 1 1.0237 -5.5923 -0.6758 13 7 0.4669 -5.2168 1.3283 14 6 1.1467 -6.2527 1.8586 15 8 2.0162 -6.8007 1.2146 16 6 0.8255 -6.7309 3.2518 17 1 -0.2160 -6.6581 3.5466 18 6 1.6410 -7.9143 3.7890 19 1 2.3988 -8.3263 3.0930 20 6 0.8779 -8.9794 4.5754 21 6 1.7637 -9.5021 5.7036 22 6 1.7079 -8.5929 6.9243 23 6 0.3902 -7.8661 7.1708 24 6 0.1119 -6.7639 6.1356 25 6 1.4533 -6.1314 5.7230 26 6 1.8953 -6.5268 4.3311 27 1 2.8239 -6.0111 3.9940 28 6 -0.4019 -3.9324 -0.6102 29 1 -0.3532 -3.8989 -1.6985 30 8 -1.6566 -4.4573 -0.1722 31 6 -0.1415 -2.5331 0.0065 32 1 -0.4850 0.8401 0.0004 33 1 2.5579 -3.8510 -0.8833 34 1 2.5311 -3.8631 0.9009 35 1 -0.2288 -4.7788 1.8431 36 1 -0.0757 -8.6403 4.9488 37 1 0.6637 -9.8255 3.8926 38 1 2.7942 -9.5734 5.3504 39 1 1.4224 -10.4999 5.9898 40 1 2.5297 -7.8866 6.8703 41 1 1.9069 -9.2251 7.8022 42 1 0.4117 -7.4195 8.1701 43 1 -0.4287 -8.5947 7.1518 44 1 -0.5141 -5.9878 6.6179 45 1 -0.4522 -7.1254 5.2849 46 1 2.2311 -6.3288 6.4594 47 1 1.3170 -5.0257 5.7362 48 1 -2.4241 -3.9774 -0.5123 49 1 -0.5228 -2.4888 1.0266 50 1 -0.6018 -1.7576 -0.6056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083808643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:25 Heat of formation + Delta-G solvation = -40.742913 kcal Electronic energy + Delta-G solvation = -28541.380455 eV Core-core repulsion = 24762.645122 eV Total energy + Delta-G solvation = -3778.735333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39201 -38.96147 -37.55769 -35.11413 -34.87747 -33.67745 -32.76420 -31.63237 -28.71667 -27.94417 -27.23235 -27.01832 -24.68717 -23.68746 -21.51411 -20.83968 -20.46142 -19.94909 -19.68813 -18.78190 -17.21727 -16.97289 -16.62105 -15.72078 -15.66984 -15.20780 -14.96039 -14.55359 -14.33926 -14.27873 -13.84115 -13.57064 -13.45306 -13.01741 -12.91198 -12.57440 -12.48754 -12.31174 -12.17712 -12.08333 -11.67717 -11.41378 -11.34248 -11.20351 -11.11615 -10.95444 -10.88606 -10.80187 -10.27218 -10.24023 -10.20205 -10.07562 -9.86812 -9.82458 -9.71852 -9.34667 -9.20609 -8.76149 -8.52731 -6.92801 -5.73714 -3.15599 2.81073 3.36092 3.41414 3.43220 3.47923 3.89434 4.37693 4.50888 4.57950 4.59752 4.66157 4.73506 4.81519 4.87521 4.94994 5.12106 5.16606 5.22346 5.29678 5.33801 5.38511 5.53296 5.55400 5.60381 5.62149 5.71050 5.75162 5.80190 5.82583 5.86253 5.89771 6.00103 6.02787 6.04167 6.09756 6.15583 6.24127 6.25000 6.30412 6.40891 6.53996 6.65335 7.04064 7.27083 7.52404 7.69604 7.98989 8.05354 8.24620 8.64885 9.13086 9.73567 10.36542 11.30356 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003074 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.880815 B = 9107.125330 C = 9785.249143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.127 3.873 11 C 0.144 3.856 12 H 0.089 0.911 13 N -0.694 5.694 14 C 0.541 3.459 15 O -0.555 6.555 16 C -0.199 4.199 17 H 0.122 0.878 18 C -0.102 4.102 19 H 0.113 0.887 20 C -0.095 4.095 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.100 4.100 27 H 0.106 0.894 28 C 0.063 3.937 29 H 0.070 0.930 30 O -0.566 6.566 31 C 0.128 3.872 32 H 0.252 0.748 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.405 0.595 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.378 0.622 49 H 0.020 0.980 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -15.977 11.186 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.000 4.000 11 C 0.039 3.961 12 H 0.107 0.893 13 N -0.343 5.343 14 C 0.328 3.672 15 O -0.434 6.434 16 C -0.220 4.220 17 H 0.139 0.861 18 C -0.121 4.121 19 H 0.131 0.869 20 C -0.132 4.132 21 C -0.146 4.146 22 C -0.158 4.158 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.131 4.131 26 C -0.118 4.118 27 H 0.124 0.876 28 C 0.003 3.997 29 H 0.088 0.912 30 O -0.370 6.370 31 C 0.003 3.997 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.240 0.760 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.077 0.923 48 H 0.225 0.775 49 H 0.038 0.962 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.510 -16.546 11.010 19.931 hybrid contribution -0.287 1.636 -0.082 1.662 sum -1.797 -14.910 10.928 18.573 Atomic orbital electron populations 1.69744 1.04905 1.24865 1.57833 1.24781 0.95775 0.97777 1.02316 0.86032 0.78560 0.83079 0.77603 1.21601 1.20624 1.21618 1.19109 0.90606 0.82231 1.42948 0.90296 1.44342 1.01462 0.99877 1.87065 1.21741 0.93781 0.85452 0.99008 1.21970 0.94741 0.96149 0.83268 0.89326 1.45615 1.39106 1.33054 1.16549 1.19653 0.81146 0.79425 0.86985 1.90647 1.32744 1.57605 1.62386 1.22552 0.98861 1.07512 0.93079 0.86059 1.22381 1.00515 0.88901 1.00306 0.86863 1.21275 0.98297 0.97057 0.96585 1.21283 1.00389 0.98084 0.94860 1.21357 0.97992 0.98910 0.97520 1.21555 0.97315 0.97393 0.98485 1.22156 0.96726 0.97899 0.99344 1.21244 0.97249 1.00394 0.94218 1.22007 0.98278 0.98456 0.93090 0.87567 1.23745 0.82384 0.96088 0.97523 0.91172 1.86334 1.15570 1.58961 1.76177 1.22595 0.85586 0.92517 0.99012 0.93683 0.94735 0.95077 0.75996 0.90181 0.92429 0.91655 0.92712 0.91572 0.93531 0.92332 0.92522 0.92601 0.90529 0.90223 0.92303 0.77508 0.96161 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 10.08 55.49 0.56 -25.50 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.14 3.39 -169.95 -0.58 -15.72 16 10 C 0.13 2.79 6.98 -3.06 -0.02 2.77 16 11 C 0.14 2.76 3.13 -66.10 -0.21 2.55 16 12 H 0.09 1.69 7.70 -51.93 -0.40 1.29 16 13 N -0.69 -12.13 4.78 -52.01 -0.25 -12.38 16 14 C 0.54 9.25 7.60 -10.96 -0.08 9.16 16 15 O -0.55 -11.15 15.86 5.56 0.09 -11.07 16 16 C -0.20 -2.60 5.33 -91.35 -0.49 -3.08 16 17 H 0.12 1.41 6.49 -52.21 -0.34 1.07 16 18 C -0.10 -1.19 4.79 -91.44 -0.44 -1.62 16 19 H 0.11 1.52 7.64 -50.88 -0.39 1.13 16 20 C -0.10 -0.88 4.89 -27.00 -0.13 -1.01 16 21 C -0.11 -0.88 5.82 -27.25 -0.16 -1.04 16 22 C -0.12 -0.93 4.96 -27.35 -0.14 -1.06 16 23 C -0.11 -0.83 5.17 -26.60 -0.14 -0.97 16 24 C -0.12 -1.07 5.06 -25.85 -0.13 -1.20 16 25 C -0.09 -0.92 4.88 -27.11 -0.13 -1.05 16 26 C -0.10 -1.17 5.68 -92.26 -0.52 -1.70 16 27 H 0.11 1.41 8.34 -50.52 -0.42 0.99 16 28 C 0.06 1.17 4.23 -24.48 -0.10 1.07 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 O -0.57 -9.08 12.63 -35.23 -0.44 -9.52 16 31 C 0.13 2.96 5.62 -2.42 -0.01 2.95 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.41 6.80 8.20 -40.82 -0.33 6.47 16 36 H 0.08 0.70 4.52 -52.55 -0.24 0.46 16 37 H 0.06 0.53 8.29 -50.89 -0.42 0.10 16 38 H 0.06 0.55 7.95 -51.83 -0.41 0.14 16 39 H 0.05 0.40 8.16 -51.78 -0.42 -0.03 16 40 H 0.07 0.54 5.76 -52.21 -0.30 0.23 16 41 H 0.05 0.33 8.21 -51.36 -0.42 -0.10 16 42 H 0.06 0.41 8.18 -51.66 -0.42 -0.01 16 43 H 0.06 0.41 8.06 -51.57 -0.42 -0.01 16 44 H 0.06 0.47 8.29 -50.92 -0.42 0.04 16 45 H 0.08 0.68 3.84 -52.33 -0.20 0.48 16 46 H 0.08 0.71 5.78 -51.98 -0.30 0.41 16 47 H 0.06 0.61 8.34 -50.53 -0.42 0.19 16 48 H 0.38 4.63 9.12 45.56 0.42 5.04 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.11 2.83 5.86 -51.93 -0.30 2.53 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -31.12 374.85 -10.36 -41.48 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.40 Total: 11.17 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.95 Total: -0.88 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.27 Total: -53.59 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.36 Total: -20.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.12 -10.36 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083808643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.737 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds