Wall clock time and date at job start Fri Apr 10 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 111.76659 * 2 1 4 4 C 1.56957 * 112.70872 * 233.71020 * 2 1 3 5 5 C 1.55923 * 100.65440 * 189.46977 * 4 2 1 6 6 C 1.54582 * 104.64301 * 33.77986 * 5 4 2 7 7 C 1.55924 * 104.64305 * 0.02562 * 6 5 4 8 8 C 1.50701 * 115.92286 * 199.96803 * 7 6 5 9 9 O 1.21281 * 120.00005 * 118.98466 * 8 7 6 10 10 N 1.34777 * 119.99985 * 298.98578 * 8 7 6 11 11 C 1.46497 * 120.00135 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.88772 * 31.12305 * 11 10 8 13 13 C 1.55126 * 111.23013 * 267.20632 * 11 10 8 14 14 N 1.47423 * 104.72149 * 279.17841 * 13 11 10 15 15 C 1.36945 * 125.64719 * 155.81534 * 14 13 11 16 16 H 1.07997 * 119.99756 * 359.71441 * 15 14 13 17 17 C 1.38805 * 119.99878 * 179.71346 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47022 * 108.70390 * 335.54841 * 14 13 11 24 24 C 1.54325 * 107.26948 * 1.29074 * 23 14 13 25 25 H 1.08999 * 110.71672 * 263.64788 * 24 23 14 26 26 O 1.42898 * 110.71865 * 140.55456 * 24 23 14 27 27 C 1.55924 * 104.50017 * 71.08618 * 7 6 5 28 28 C 1.55924 * 100.65075 * 296.60207 * 4 2 1 29 29 H 1.09002 * 109.46900 * 293.33054 * 1 2 3 30 30 H 1.09000 * 109.47397 * 53.33569 * 1 2 3 31 31 H 1.09001 * 109.47088 * 173.33745 * 1 2 3 32 32 H 1.08998 * 109.47127 * 186.66715 * 3 2 1 33 33 H 1.09000 * 109.46893 * 306.67157 * 3 2 1 34 34 H 1.09001 * 109.46743 * 66.66665 * 3 2 1 35 35 H 1.09004 * 116.86541 * 63.03317 * 4 2 1 36 36 H 1.08999 * 110.40072 * 274.98988 * 5 4 2 37 37 H 1.09002 * 110.50251 * 152.62275 * 5 4 2 38 38 H 1.09000 * 110.40190 * 241.20659 * 6 5 4 39 39 H 1.09001 * 110.40356 * 118.79012 * 6 5 4 40 40 H 0.97003 * 119.99873 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.50043 * 160.33089 * 13 11 10 42 42 H 1.09005 * 110.33957 * 37.93985 * 13 11 10 43 43 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.88182 * 120.70703 * 23 14 13 45 45 H 1.08996 * 109.88283 * 241.87185 * 23 14 13 46 46 H 0.96708 * 113.99834 * 61.45524 * 26 24 23 47 47 H 1.09001 * 110.40198 * 47.70418 * 27 7 6 48 48 H 1.09003 * 110.40199 * 170.12153 * 27 7 6 49 49 H 1.09007 * 110.40150 * 85.01004 * 28 4 2 50 50 H 1.08995 * 110.40074 * 207.42260 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0973 1.4209 0.0000 4 6 2.1358 -0.8570 -1.1671 5 6 3.6414 -0.8722 -0.7619 6 6 3.6300 -0.8801 0.7839 7 6 2.1186 -0.8695 1.1670 8 6 1.7968 -0.4112 2.5661 9 8 1.1017 0.5675 2.7388 10 7 2.2815 -1.0889 3.6255 11 6 1.9692 -0.6431 4.9855 12 1 0.9878 -0.1702 5.0237 13 6 3.0648 0.3109 5.5295 14 7 4.1448 -0.5818 5.9879 15 6 5.4657 -0.2405 6.1073 16 1 5.7910 0.7568 5.8505 17 6 6.3863 -1.1763 6.5583 18 7 5.9898 -2.3919 6.8708 19 14 8.1881 -0.7110 6.7204 20 1 8.8910 -1.0013 5.4449 21 1 8.2996 0.7374 7.0285 22 1 8.8062 -1.4993 7.8167 23 6 3.5680 -1.8971 6.3019 24 6 2.0582 -1.8212 5.9912 25 1 1.4890 -1.6042 6.8951 26 8 1.6042 -3.0351 5.3893 27 6 1.6082 -2.2914 0.7813 28 6 1.6141 -2.2755 -0.7839 29 1 -0.3633 0.4070 0.9437 30 1 -0.3634 0.6136 -0.8243 31 1 -0.3633 -1.0207 -0.1192 32 1 3.1799 1.3798 -0.1193 33 1 1.6620 1.9859 -0.8243 34 1 1.8540 1.9092 0.9436 35 1 1.9192 -0.5281 -2.1835 36 1 4.1440 0.0207 -1.1336 37 1 4.1303 -1.7689 -1.1429 38 1 4.1271 0.0089 1.1721 39 1 4.1114 -1.7816 1.1629 40 1 2.8372 -1.8719 3.4873 41 1 2.6796 0.8992 6.3624 42 1 3.4251 0.9657 4.7360 43 1 6.6332 -3.0460 7.1856 44 1 4.0354 -2.6639 5.6841 45 1 3.7183 -2.1256 7.3570 46 1 1.7110 -3.8160 5.9498 47 1 2.2875 -3.0549 1.1605 48 1 0.6015 -2.4515 1.1675 49 1 0.6069 -2.4276 -1.1721 50 1 2.2883 -3.0435 -1.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083842787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:31 Heat of formation + Delta-G solvation = -59.004975 kcal Electronic energy + Delta-G solvation = -29913.018282 eV Core-core repulsion = 26133.491046 eV Total energy + Delta-G solvation = -3779.527236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24831 -39.00405 -37.43357 -35.05595 -33.68396 -32.05500 -31.52647 -31.03573 -29.84326 -28.26210 -27.02445 -26.43708 -24.55953 -24.10165 -22.20455 -21.75798 -20.41000 -19.83006 -19.02549 -18.39630 -16.99072 -16.70819 -16.37258 -15.70189 -15.59949 -15.00791 -14.73413 -14.56906 -14.21264 -13.88918 -13.65120 -13.29495 -12.76461 -12.67459 -12.56820 -12.42691 -12.34594 -12.06449 -11.92596 -11.83999 -11.78722 -11.60241 -11.37096 -11.24870 -11.17693 -10.97891 -10.87625 -10.75911 -10.50709 -10.37362 -10.18757 -10.10005 -9.93295 -9.85401 -9.82989 -9.31825 -9.21172 -8.76414 -8.43867 -6.91029 -5.79174 -3.12443 3.01195 3.35744 3.41653 3.42998 3.59842 4.27057 4.40752 4.43571 4.49589 4.61447 5.04457 5.09055 5.15663 5.18112 5.25319 5.35815 5.41076 5.42028 5.43206 5.49572 5.51304 5.55104 5.62834 5.67587 5.82971 5.84748 5.88910 5.91101 5.95048 6.00535 6.06376 6.13308 6.16855 6.19810 6.23995 6.27538 6.27902 6.35830 6.46372 6.57391 6.58606 6.60209 7.07749 7.30912 7.42668 7.69495 8.05938 8.07942 8.15975 8.71139 9.13359 9.73505 10.37559 11.32643 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004215 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.583032 B = 6640.780139 C = 7330.812000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C -0.142 4.142 4 C -0.098 4.098 5 C -0.117 4.117 6 C -0.108 4.108 7 C -0.091 4.091 8 C 0.544 3.456 9 O -0.548 6.548 10 N -0.687 5.687 11 C 0.141 3.859 12 H 0.092 0.908 13 C 0.124 3.876 14 N -0.599 5.599 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.151 3.849 24 C 0.064 3.936 25 H 0.065 0.935 26 O -0.563 6.563 27 C -0.106 4.106 28 C -0.116 4.116 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.406 0.594 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.252 0.748 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.376 0.624 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 -0.886 -13.497 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 C -0.199 4.199 4 C -0.117 4.117 5 C -0.154 4.154 6 C -0.146 4.146 7 C -0.094 4.094 8 C 0.330 3.670 9 O -0.427 6.427 10 N -0.336 5.336 11 C 0.035 3.965 12 H 0.110 0.890 13 C -0.003 4.003 14 N -0.327 5.327 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.025 3.975 24 C 0.003 3.997 25 H 0.083 0.917 26 O -0.367 6.367 27 C -0.144 4.144 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.241 0.759 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.223 0.777 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.883 0.097 -13.761 16.942 hybrid contribution 1.557 -0.640 0.754 1.844 sum -8.326 -0.543 -13.006 15.453 Atomic orbital electron populations 1.21753 0.93956 1.01406 1.02527 1.22212 0.95067 0.94198 0.92077 1.21805 1.00539 0.95125 1.02453 1.23604 0.95117 0.95171 0.97772 1.22607 0.95991 1.01566 0.95266 1.22575 0.93628 1.02681 0.95744 1.22921 0.97512 0.97052 0.91929 1.19643 0.79215 0.82852 0.85267 1.90613 1.38998 1.26809 1.86255 1.45509 1.51985 1.31382 1.04734 1.22174 0.98919 0.94451 0.80984 0.89049 1.22046 0.88810 0.92933 0.96543 1.44307 1.03114 1.07745 1.77550 1.19063 0.81616 0.96962 1.37677 0.90376 1.24767 0.98187 0.95935 1.01431 1.69925 1.32838 1.03615 1.50840 0.86114 0.84754 0.77535 0.77348 1.21609 1.20682 1.21672 1.21853 0.86259 0.89132 1.00230 1.23556 0.97743 0.84161 0.94194 0.91686 1.86408 1.86129 1.17421 1.46773 1.22886 1.01381 0.94474 0.95611 1.22919 1.00833 0.96602 0.95043 0.91044 0.93150 0.92715 0.92463 0.93119 0.91214 0.88428 0.91656 0.91657 0.91220 0.91081 0.75938 0.95153 0.93308 0.93758 0.92508 0.93614 0.77659 0.91069 0.91416 0.91733 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.51 37.15 0.32 -1.37 16 2 C -0.04 -0.43 0.56 -150.21 -0.08 -0.51 16 3 C -0.14 -1.81 8.43 37.16 0.31 -1.50 16 4 C -0.10 -0.99 4.51 -85.35 -0.38 -1.38 16 5 C -0.12 -1.23 5.54 -24.34 -0.13 -1.37 16 6 C -0.11 -1.41 5.20 -24.34 -0.13 -1.54 16 7 C -0.09 -1.24 0.72 -150.37 -0.11 -1.34 16 8 C 0.54 9.23 6.99 -10.98 -0.08 9.15 16 9 O -0.55 -10.56 13.34 5.56 0.07 -10.48 16 10 N -0.69 -12.06 4.81 -51.62 -0.25 -12.31 16 11 C 0.14 2.61 3.31 -65.67 -0.22 2.40 16 12 H 0.09 1.68 7.54 -51.93 -0.39 1.28 16 13 C 0.12 2.60 6.95 -2.41 -0.02 2.59 16 14 N -0.60 -14.68 3.39 -169.94 -0.58 -15.25 16 15 C -0.23 -6.10 10.28 -15.06 -0.15 -6.26 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.00 10.31 55.49 0.57 -25.43 16 19 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.15 3.40 5.13 -3.06 -0.02 3.38 16 24 C 0.06 1.14 4.12 -24.90 -0.10 1.04 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 O -0.56 -9.03 12.67 -35.23 -0.45 -9.47 16 27 C -0.11 -1.25 5.35 -23.27 -0.12 -1.37 16 28 C -0.12 -1.14 5.58 -23.27 -0.13 -1.27 16 29 H 0.07 1.04 6.65 -51.93 -0.35 0.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.61 5.59 -51.93 -0.29 0.32 16 32 H 0.06 0.70 5.35 -51.93 -0.28 0.42 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.66 7.20 -51.93 -0.37 0.29 16 37 H 0.06 0.63 7.84 -51.93 -0.41 0.23 16 38 H 0.07 1.01 7.55 -51.93 -0.39 0.62 16 39 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 40 H 0.41 7.20 8.39 -40.82 -0.34 6.86 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.42 7.30 -51.93 -0.38 1.04 16 45 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 46 H 0.38 4.68 9.11 45.56 0.42 5.10 16 47 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 48 H 0.07 0.83 7.66 -51.93 -0.40 0.44 16 49 H 0.06 0.58 7.31 -51.93 -0.38 0.20 16 50 H 0.06 0.58 7.84 -51.93 -0.41 0.18 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -30.18 372.27 -8.79 -38.96 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.60 Total: 11.35 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.14 Total: 0.34 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.25 Total: -52.99 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.37 Total: -19.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.18 -8.79 -38.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083842787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.042 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds