Wall clock time and date at job start Fri Apr 10 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 111.76659 * 2 1 4 4 C 1.56957 * 112.70872 * 233.71020 * 2 1 3 5 5 C 1.55923 * 100.65440 * 189.46977 * 4 2 1 6 6 C 1.54582 * 104.64301 * 33.77986 * 5 4 2 7 7 C 1.55924 * 104.64305 * 0.02562 * 6 5 4 8 8 C 1.50701 * 115.92286 * 199.96803 * 7 6 5 9 9 O 1.21281 * 120.00005 * 118.98466 * 8 7 6 10 10 N 1.34777 * 119.99985 * 298.98578 * 8 7 6 11 11 C 1.46497 * 120.00135 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.88772 * 31.12305 * 11 10 8 13 13 C 1.55126 * 111.23013 * 267.20632 * 11 10 8 14 14 N 1.47423 * 104.72149 * 279.17841 * 13 11 10 15 15 C 1.36945 * 125.64719 * 155.81534 * 14 13 11 16 16 H 1.07997 * 119.99756 * 359.71441 * 15 14 13 17 17 C 1.38805 * 119.99878 * 179.71346 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47022 * 108.70390 * 335.54841 * 14 13 11 24 24 C 1.54325 * 107.26948 * 1.29074 * 23 14 13 25 25 H 1.08999 * 110.71672 * 263.64788 * 24 23 14 26 26 O 1.42898 * 110.71865 * 140.55456 * 24 23 14 27 27 C 1.55924 * 104.50017 * 71.08618 * 7 6 5 28 28 C 1.55924 * 100.65075 * 296.60207 * 4 2 1 29 29 H 1.09002 * 109.46900 * 293.33054 * 1 2 3 30 30 H 1.09000 * 109.47397 * 53.33569 * 1 2 3 31 31 H 1.09001 * 109.47088 * 173.33745 * 1 2 3 32 32 H 1.08998 * 109.47127 * 186.66715 * 3 2 1 33 33 H 1.09000 * 109.46893 * 306.67157 * 3 2 1 34 34 H 1.09001 * 109.46743 * 66.66665 * 3 2 1 35 35 H 1.09004 * 116.86541 * 63.03317 * 4 2 1 36 36 H 1.08999 * 110.40072 * 274.98988 * 5 4 2 37 37 H 1.09002 * 110.50251 * 152.62275 * 5 4 2 38 38 H 1.09000 * 110.40190 * 241.20659 * 6 5 4 39 39 H 1.09001 * 110.40356 * 118.79012 * 6 5 4 40 40 H 0.97003 * 119.99873 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.50043 * 160.33089 * 13 11 10 42 42 H 1.09005 * 110.33957 * 37.93985 * 13 11 10 43 43 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.88182 * 120.70703 * 23 14 13 45 45 H 1.08996 * 109.88283 * 241.87185 * 23 14 13 46 46 H 0.96708 * 113.99834 * 61.45524 * 26 24 23 47 47 H 1.09001 * 110.40198 * 47.70418 * 27 7 6 48 48 H 1.09003 * 110.40199 * 170.12153 * 27 7 6 49 49 H 1.09007 * 110.40150 * 85.01004 * 28 4 2 50 50 H 1.08995 * 110.40074 * 207.42260 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0973 1.4209 0.0000 4 6 2.1358 -0.8570 -1.1671 5 6 3.6414 -0.8722 -0.7619 6 6 3.6300 -0.8801 0.7839 7 6 2.1186 -0.8695 1.1670 8 6 1.7968 -0.4112 2.5661 9 8 1.1017 0.5675 2.7388 10 7 2.2815 -1.0889 3.6255 11 6 1.9692 -0.6431 4.9855 12 1 0.9878 -0.1702 5.0237 13 6 3.0648 0.3109 5.5295 14 7 4.1448 -0.5818 5.9879 15 6 5.4657 -0.2405 6.1073 16 1 5.7910 0.7568 5.8505 17 6 6.3863 -1.1763 6.5583 18 7 5.9898 -2.3919 6.8708 19 14 8.1881 -0.7110 6.7204 20 1 8.8910 -1.0013 5.4449 21 1 8.2996 0.7374 7.0285 22 1 8.8062 -1.4993 7.8167 23 6 3.5680 -1.8971 6.3019 24 6 2.0582 -1.8212 5.9912 25 1 1.4890 -1.6042 6.8951 26 8 1.6042 -3.0351 5.3893 27 6 1.6082 -2.2914 0.7813 28 6 1.6141 -2.2755 -0.7839 29 1 -0.3633 0.4070 0.9437 30 1 -0.3634 0.6136 -0.8243 31 1 -0.3633 -1.0207 -0.1192 32 1 3.1799 1.3798 -0.1193 33 1 1.6620 1.9859 -0.8243 34 1 1.8540 1.9092 0.9436 35 1 1.9192 -0.5281 -2.1835 36 1 4.1440 0.0207 -1.1336 37 1 4.1303 -1.7689 -1.1429 38 1 4.1271 0.0089 1.1721 39 1 4.1114 -1.7816 1.1629 40 1 2.8372 -1.8719 3.4873 41 1 2.6796 0.8992 6.3624 42 1 3.4251 0.9657 4.7360 43 1 6.6332 -3.0460 7.1856 44 1 4.0354 -2.6639 5.6841 45 1 3.7183 -2.1256 7.3570 46 1 1.7110 -3.8160 5.9498 47 1 2.2875 -3.0549 1.1605 48 1 0.6015 -2.4515 1.1675 49 1 0.6069 -2.4276 -1.1721 50 1 2.2883 -3.0435 -1.1629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083842787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:31 Heat of formation + Delta-G solvation = -79.274018 kcal Electronic energy + Delta-G solvation = -29913.897214 eV Core-core repulsion = 26133.491046 eV Total energy + Delta-G solvation = -3780.406167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28737 -40.46083 -38.90506 -36.62735 -35.27515 -33.64286 -32.76945 -31.94303 -31.07001 -29.89833 -28.71159 -27.40945 -26.37261 -25.20460 -23.09790 -23.07869 -22.19135 -21.31824 -20.16544 -19.47647 -18.87343 -18.12384 -17.57495 -17.24119 -16.61279 -16.49074 -16.10229 -15.92923 -15.73257 -15.31831 -15.07359 -14.58535 -14.41141 -14.00999 -13.80142 -13.65690 -13.58639 -13.37923 -13.15438 -13.14106 -12.93255 -12.78679 -12.77698 -12.75098 -12.57103 -12.49387 -12.08448 -12.04303 -11.92884 -11.81055 -11.69940 -11.46907 -11.29340 -10.88624 -10.83381 -10.79700 -10.77405 -10.54288 -9.98382 -8.91576 -7.88222 -5.23275 1.45268 1.45556 1.54460 1.67445 2.25729 2.46100 3.14458 3.29825 3.32818 3.50263 3.53422 3.60244 3.81817 3.95235 3.97235 4.18924 4.20459 4.25749 4.33291 4.48574 4.49137 4.53524 4.54358 4.56378 4.59734 4.62350 4.67607 4.81974 4.88919 4.90189 4.95582 5.03512 5.08752 5.08891 5.17233 5.21313 5.24798 5.29415 5.38339 5.38701 5.46344 5.48906 5.52787 5.60443 5.64676 5.68203 6.14167 6.65793 6.85454 7.06896 7.32972 7.71029 8.34573 9.21356 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004215 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.583032 B = 6640.780139 C = 7330.812000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 C -0.139 4.139 4 C -0.084 4.084 5 C -0.112 4.112 6 C -0.109 4.109 7 C -0.099 4.099 8 C 0.539 3.461 9 O -0.574 6.574 10 N -0.689 5.689 11 C 0.147 3.853 12 H 0.099 0.901 13 C 0.124 3.876 14 N -0.615 5.615 15 C -0.242 4.242 16 H 0.075 0.925 17 C -0.055 4.055 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.286 1.286 21 H -0.274 1.274 22 H -0.292 1.292 23 C 0.164 3.836 24 C 0.086 3.914 25 H 0.087 0.913 26 O -0.561 6.561 27 C -0.103 4.103 28 C -0.110 4.110 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.404 0.596 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.248 0.752 44 H 0.028 0.972 45 H 0.017 0.983 46 H 0.395 0.605 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -1.490 -15.668 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.040 4.040 3 C -0.196 4.196 4 C -0.102 4.102 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.102 4.102 8 C 0.327 3.673 9 O -0.454 6.454 10 N -0.337 5.337 11 C 0.040 3.960 12 H 0.117 0.883 13 C -0.002 4.002 14 N -0.343 5.343 15 C -0.371 4.371 16 H 0.093 0.907 17 C -0.249 4.249 18 N -0.594 5.594 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.199 1.199 22 H -0.218 1.218 23 C 0.038 3.962 24 C 0.026 3.974 25 H 0.105 0.895 26 O -0.368 6.368 27 C -0.141 4.141 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.239 0.761 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.245 0.755 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.424 -0.511 -15.940 19.052 hybrid contribution 1.706 -0.413 1.475 2.293 sum -8.718 -0.924 -14.464 16.914 Atomic orbital electron populations 1.21700 0.93778 1.02181 1.01534 1.22299 0.95234 0.93903 0.92564 1.21765 1.00816 0.95700 1.01351 1.23634 0.94041 0.94592 0.97930 1.22607 0.96856 1.02656 0.92807 1.22567 0.92872 1.01198 0.98020 1.22950 0.98217 0.98850 0.90136 1.20319 0.78340 0.82204 0.86439 1.90597 1.40117 1.27861 1.86838 1.45559 1.52116 1.31411 1.04645 1.22035 0.98041 0.94154 0.81723 0.88328 1.22117 0.88784 0.93015 0.96311 1.44502 1.03154 1.09039 1.77592 1.19340 0.83186 0.97007 1.37558 0.90727 1.25499 1.01846 0.96011 1.01541 1.70111 1.33635 1.04219 1.51394 0.85155 0.80150 0.77448 0.77026 1.21325 1.19907 1.21818 1.21623 0.89202 0.87600 0.97735 1.23235 0.94580 0.84894 0.94738 0.89512 1.86379 1.85497 1.17575 1.47329 1.22895 1.00750 0.92878 0.97612 1.22922 1.02149 0.96772 0.92883 0.94089 0.91461 0.91624 0.92350 0.91279 0.94522 0.85878 0.91099 0.90081 0.93628 0.91678 0.76107 0.94271 0.94861 0.94250 0.95342 0.96500 0.75541 0.91206 0.92078 0.90295 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.51 71.98 0.61 -2.44 16 2 C -0.04 -0.91 0.56 -49.40 -0.03 -0.93 16 3 C -0.14 -3.46 8.43 71.98 0.61 -2.85 16 4 C -0.08 -1.41 4.51 -7.38 -0.03 -1.44 16 5 C -0.11 -2.09 5.54 32.14 0.18 -1.91 16 6 C -0.11 -2.79 5.20 32.14 0.17 -2.62 16 7 C -0.10 -2.63 0.72 -49.50 -0.04 -2.67 16 8 C 0.54 18.61 6.99 87.66 0.61 19.22 16 9 O -0.57 -22.70 13.34 -3.03 -0.04 -22.74 16 10 N -0.69 -24.55 4.81 -435.61 -2.10 -26.65 16 11 C 0.15 5.47 3.31 46.46 0.15 5.62 16 12 H 0.10 3.58 7.54 -2.39 -0.02 3.56 16 13 C 0.12 5.34 6.95 86.93 0.60 5.94 16 14 N -0.62 -30.89 3.39 -691.55 -2.35 -33.23 16 15 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 16 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.06 -3.07 5.49 84.86 0.47 -2.60 16 18 N -0.94 -54.28 10.31 21.65 0.22 -54.06 16 19 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 C 0.16 7.55 5.13 86.73 0.45 8.00 16 24 C 0.09 3.05 4.12 31.78 0.13 3.18 16 25 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 26 O -0.56 -17.32 12.67 -148.98 -1.89 -19.21 16 27 C -0.10 -2.28 5.35 32.84 0.18 -2.10 16 28 C -0.11 -1.77 5.58 32.84 0.18 -1.58 16 29 H 0.04 1.18 6.65 -2.39 -0.02 1.16 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.32 5.59 -2.39 -0.01 1.30 16 32 H 0.06 1.40 5.35 -2.39 -0.01 1.39 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.14 6.79 -2.39 -0.02 1.12 16 35 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.26 7.20 -2.39 -0.02 1.25 16 37 H 0.08 1.30 7.84 -2.39 -0.02 1.28 16 38 H 0.04 1.36 7.55 -2.39 -0.02 1.34 16 39 H 0.06 1.71 7.80 -2.39 -0.02 1.69 16 40 H 0.40 14.61 8.39 -92.71 -0.78 13.83 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.03 1.46 7.30 -2.39 -0.02 1.45 16 45 H 0.02 0.87 7.51 -2.39 -0.02 0.85 16 46 H 0.39 9.23 9.11 -74.05 -0.67 8.55 16 47 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 48 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 49 H 0.08 1.09 7.31 -2.38 -0.02 1.08 16 50 H 0.08 1.10 7.84 -2.39 -0.02 1.08 16 Total: -1.00 -66.63 372.27 0.48 -66.15 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.50 Total: 34.37 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.10 Total: 8.25 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.22 Total: -113.94 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.93 Total: -41.95 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.63 0.48 -66.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083842787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.126 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds