Wall clock time and date at job start Fri Apr 10 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47651 * 2 1 4 4 O 1.42899 * 109.47005 * 240.00068 * 2 1 3 5 5 C 1.53004 * 109.47098 * 119.99963 * 2 1 3 6 6 C 1.50695 * 109.46711 * 63.04470 * 5 2 1 7 7 O 1.21286 * 120.00570 * 353.35440 * 6 5 2 8 8 N 1.34781 * 120.00018 * 173.35988 * 6 5 2 9 9 C 1.48145 * 127.83768 * 180.02562 * 8 6 5 10 10 C 1.54391 * 104.60227 * 219.49006 * 9 8 6 11 11 H 1.08995 * 110.80978 * 216.51881 * 10 9 8 12 12 C 1.54160 * 105.01364 * 336.21131 * 10 9 8 13 13 H 1.08997 * 111.54565 * 239.63393 * 12 10 9 14 14 C 1.48149 * 127.83188 * 359.96949 * 8 6 5 15 15 C 1.53277 * 109.34826 * 116.54815 * 12 10 9 16 16 H 1.09004 * 110.49079 * 182.42286 * 15 12 10 17 17 C 1.53320 * 108.74493 * 60.44394 * 15 12 10 18 18 C 1.52932 * 109.58555 * 299.32642 * 17 15 12 19 19 C 1.52983 * 109.06250 * 93.80943 * 10 9 8 20 20 H 1.09005 * 109.63271 * 65.45712 * 19 10 9 21 21 C 1.53605 * 109.30458 * 305.25577 * 19 10 9 22 22 N 1.47635 * 106.72739 * 300.54392 * 21 19 10 23 23 C 1.36936 * 122.05648 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99919 * 179.71105 * 23 22 21 25 25 C 1.38810 * 120.00479 * 359.71510 * 23 22 21 26 26 N 1.31621 * 119.99415 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00365 * 180.27493 * 25 23 22 28 28 H 1.48502 * 109.46850 * 179.72427 * 27 25 23 29 29 H 1.48498 * 109.47066 * 299.72322 * 27 25 23 30 30 H 1.48497 * 109.46970 * 59.72497 * 27 25 23 31 31 H 1.08998 * 109.46743 * 300.00300 * 1 2 3 32 32 H 1.09004 * 109.46984 * 59.99665 * 1 2 3 33 33 H 1.08989 * 109.47430 * 180.02562 * 1 2 3 34 34 H 1.08989 * 109.47178 * 184.98148 * 3 2 1 35 35 H 1.09005 * 109.46851 * 304.98261 * 3 2 1 36 36 H 1.08999 * 109.46874 * 64.97426 * 3 2 1 37 37 H 0.96699 * 113.99794 * 300.00124 * 4 2 1 38 38 H 1.08996 * 109.46800 * 303.04354 * 5 2 1 39 39 H 1.09000 * 109.46968 * 183.04212 * 5 2 1 40 40 H 1.09001 * 110.41293 * 338.27286 * 9 8 6 41 41 H 1.09005 * 110.40997 * 100.70870 * 9 8 6 42 42 H 1.09001 * 110.40771 * 21.67915 * 14 8 6 43 43 H 1.08990 * 110.41359 * 259.23810 * 14 8 6 44 44 H 1.09002 * 109.45677 * 59.35946 * 17 15 12 45 45 H 1.09001 * 109.45497 * 179.28595 * 17 15 12 46 46 H 1.09006 * 109.37883 * 240.54204 * 18 17 15 47 47 H 1.08992 * 109.38405 * 120.87820 * 18 17 15 48 48 H 1.09000 * 110.12413 * 181.17168 * 21 19 10 49 49 H 1.08999 * 109.87116 * 59.78143 * 21 19 10 50 50 H 0.97007 * 119.99512 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.6002 -2.1621 1.2120 7 8 0.8446 -2.5434 0.3433 8 7 2.0465 -3.0272 2.1442 9 6 1.7298 -4.4688 2.2719 10 6 1.5782 -4.7010 3.7907 11 1 1.9720 -5.6770 4.0744 12 6 2.3912 -3.5697 4.4507 13 1 3.1899 -3.9645 5.0787 14 6 2.9658 -2.7524 3.2730 15 6 1.4486 -2.6737 5.2620 16 1 1.9981 -1.8418 5.7026 17 6 0.7757 -3.5218 6.3476 18 6 -0.0336 -4.6429 5.6941 19 6 0.1026 -4.5682 4.1717 20 1 -0.4700 -5.3691 3.7039 21 6 -0.4253 -3.2079 3.6916 22 7 0.3961 -2.1755 4.3541 23 6 0.1903 -0.8380 4.1446 24 1 0.8081 -0.1108 4.6504 25 6 -0.8125 -0.4167 3.2821 26 7 -1.5652 -1.3030 2.6653 27 14 -1.0882 1.4077 2.9904 28 1 -2.2055 1.5920 2.0297 29 1 -1.4268 2.0689 4.2762 30 1 0.1484 2.0123 2.4333 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 3.1264 1.4437 -0.0892 35 1 1.6058 1.9815 -0.8420 36 1 1.7514 1.9299 0.9312 37 1 1.7209 -1.5952 -1.2329 38 1 1.6328 -0.2399 2.1383 39 1 3.1286 -0.6743 1.2769 40 1 0.7974 -4.7003 1.7570 41 1 2.5448 -5.0737 1.8743 42 1 2.9662 -1.6890 3.5126 43 1 3.9741 -3.0892 3.0327 44 1 1.5383 -3.9547 6.9951 45 1 0.1116 -2.8926 6.9403 46 1 -1.0833 -4.5387 5.9689 47 1 0.3360 -5.6069 6.0435 48 1 -1.4713 -3.0904 3.9747 49 1 -0.3199 -3.1305 2.6094 50 1 -2.2657 -1.0086 2.0623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087354461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:53 Heat of formation + Delta-G solvation = -48.612512 kcal Electronic energy + Delta-G solvation = -32057.740438 eV Core-core repulsion = 28278.663853 eV Total energy + Delta-G solvation = -3779.076585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64581 -38.94764 -36.65241 -35.12310 -33.43443 -32.07460 -31.63910 -30.29487 -29.75062 -27.85345 -26.70572 -26.61947 -25.32467 -23.56426 -21.87989 -21.04255 -20.56246 -19.97020 -18.78886 -17.28815 -16.48931 -16.11415 -15.95427 -15.78234 -15.21484 -14.68704 -14.48681 -14.29337 -14.18181 -13.75251 -13.37347 -12.78733 -12.61752 -12.31136 -12.19967 -12.02010 -11.89277 -11.82026 -11.74483 -11.52116 -11.43744 -11.30369 -11.21740 -11.12208 -11.01107 -10.70389 -10.60142 -10.54281 -10.39757 -10.22093 -9.96547 -9.77721 -9.65475 -9.33980 -9.25391 -9.19877 -8.81140 -8.43613 -7.90730 -6.77952 -5.62090 -2.97989 3.30698 3.39904 3.43265 3.46752 3.74599 4.44946 4.83925 4.94713 5.00903 5.21423 5.31730 5.35219 5.45905 5.53633 5.63111 5.65599 5.72217 5.76088 5.79867 5.82838 5.86993 5.95333 6.02113 6.08209 6.12811 6.13800 6.28074 6.30989 6.36918 6.38539 6.40971 6.44379 6.48538 6.55345 6.63045 6.65204 6.73416 6.76348 6.83664 6.87368 6.98286 7.11793 7.30028 7.64597 7.81918 8.01507 8.23109 8.36182 8.41630 9.02558 9.28532 9.89975 10.46788 11.40213 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.007554 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.046440 B = 3705.654507 C = 4709.332970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.149 3.851 3 C -0.140 4.140 4 O -0.576 6.576 5 C -0.165 4.165 6 C 0.573 3.427 7 O -0.553 6.553 8 N -0.597 5.597 9 C 0.114 3.886 10 C -0.082 4.082 11 H 0.069 0.931 12 C -0.114 4.114 13 H 0.073 0.927 14 C 0.120 3.880 15 C 0.177 3.823 16 H 0.065 0.935 17 C -0.127 4.127 18 C -0.099 4.099 19 C -0.114 4.114 20 H 0.059 0.941 21 C 0.198 3.802 22 N -0.591 5.591 23 C -0.243 4.243 24 H 0.068 0.932 25 C 0.010 3.990 26 N -0.897 5.897 27 Si 0.881 3.119 28 H -0.289 1.289 29 H -0.294 1.294 30 H -0.279 1.279 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.382 0.618 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.068 0.932 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 -4.307 2.276 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.108 3.892 3 C -0.197 4.197 4 O -0.386 6.386 5 C -0.205 4.205 6 C 0.365 3.635 7 O -0.433 6.433 8 N -0.329 5.329 9 C -0.010 4.010 10 C -0.102 4.102 11 H 0.087 0.913 12 C -0.136 4.136 13 H 0.091 0.909 14 C -0.004 4.004 15 C 0.069 3.931 16 H 0.083 0.917 17 C -0.167 4.167 18 C -0.137 4.137 19 C -0.133 4.133 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.315 5.315 23 C -0.372 4.372 24 H 0.086 0.914 25 C -0.188 4.188 26 N -0.543 5.543 27 Si 0.713 3.287 28 H -0.215 1.215 29 H -0.222 1.222 30 H -0.207 1.207 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.432 -3.770 1.454 9.350 hybrid contribution -0.573 0.473 0.326 0.811 sum 7.859 -3.296 1.780 8.706 Atomic orbital electron populations 1.22741 0.94735 1.05867 1.00575 1.20794 0.93759 0.91266 0.83398 1.21813 1.01121 0.94438 1.02367 1.86311 1.77422 1.30572 1.44326 1.22444 1.01421 0.93904 1.02702 1.19690 0.78322 0.86280 0.79238 1.90477 1.36242 1.78795 1.37767 1.48479 1.47312 1.09097 1.28051 1.22209 1.00559 0.82149 0.96043 1.21954 0.96589 0.97401 0.94236 0.91263 1.22763 0.97739 0.96296 0.96755 0.90903 1.22188 0.91078 1.01077 0.86045 1.20581 0.89519 0.93371 0.89665 0.91691 1.22020 0.98832 0.97546 0.98297 1.21319 0.99664 0.97071 0.95610 1.21856 0.94471 1.01633 0.95317 0.92226 1.21252 0.92941 0.81158 0.97195 1.44424 1.35159 1.02216 1.49691 1.19018 1.13996 0.82064 1.22142 0.91424 1.24635 0.98441 0.96075 0.99667 1.69978 1.22345 1.30239 1.31773 0.86822 0.77923 0.86694 0.77219 1.21534 1.22196 1.20654 0.92090 0.94081 0.88173 0.92378 0.92274 0.91090 0.76611 0.85672 0.90581 0.90202 0.92846 0.90178 0.93045 0.93671 0.92452 0.92890 0.93954 0.94088 0.91451 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 8.54 37.16 0.32 -3.58 16 2 C 0.15 2.87 1.11 -90.62 -0.10 2.77 16 3 C -0.14 -2.38 8.84 37.16 0.33 -2.05 16 4 O -0.58 -11.21 12.93 -53.38 -0.69 -11.90 16 5 C -0.16 -3.15 3.87 -27.88 -0.11 -3.25 16 6 C 0.57 11.57 6.40 -10.99 -0.07 11.50 16 7 O -0.55 -12.45 11.82 -12.59 -0.15 -12.60 16 8 N -0.60 -10.74 1.98 -169.27 -0.33 -11.08 16 9 C 0.11 1.88 5.80 -2.41 -0.01 1.87 16 10 C -0.08 -1.26 3.17 -89.29 -0.28 -1.55 16 11 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -1.71 3.21 -89.11 -0.29 -1.99 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.12 1.85 6.03 -2.38 -0.01 1.84 16 15 C 0.18 3.11 2.89 -66.98 -0.19 2.92 16 16 H 0.06 1.13 7.99 -51.93 -0.42 0.72 16 17 C -0.13 -2.07 5.85 -26.60 -0.16 -2.22 16 18 C -0.10 -1.61 5.65 -26.75 -0.15 -1.76 16 19 C -0.11 -2.01 2.70 -90.29 -0.24 -2.25 16 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 21 C 0.20 4.41 3.64 -3.11 -0.01 4.40 16 22 N -0.59 -12.65 2.01 -163.16 -0.33 -12.98 16 23 C -0.24 -5.81 8.63 -15.06 -0.13 -5.94 16 24 H 0.07 1.61 7.79 -52.49 -0.41 1.20 16 25 C 0.01 0.24 4.67 -17.43 -0.08 0.16 16 26 N -0.90 -23.77 9.77 55.49 0.54 -23.23 16 27 Si 0.88 20.72 25.97 -169.99 -4.41 16.30 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.21 6.35 56.52 0.36 -5.85 16 31 H 0.06 1.37 3.20 -51.93 -0.17 1.21 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 2.38 5.54 -51.94 -0.29 2.10 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 37 H 0.38 7.42 6.51 45.56 0.30 7.72 16 38 H 0.13 2.63 6.09 -51.93 -0.32 2.31 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.32 7.12 -51.93 -0.37 0.95 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.04 1.07 7.24 -51.93 -0.38 0.70 16 49 H 0.07 1.68 4.26 -51.93 -0.22 1.46 16 50 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -26.85 350.34 -8.98 -35.83 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -7.69 Total: 13.52 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.20 Total: 0.85 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.12 Total: -47.29 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.84 Total: -24.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.41 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.85 -8.98 -35.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.781 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds