Wall clock time and date at job start Fri Apr 10 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47651 * 2 1 4 4 O 1.42899 * 109.47005 * 240.00068 * 2 1 3 5 5 C 1.53004 * 109.47098 * 119.99963 * 2 1 3 6 6 C 1.50695 * 109.46711 * 63.04470 * 5 2 1 7 7 O 1.21286 * 120.00570 * 353.35440 * 6 5 2 8 8 N 1.34781 * 120.00018 * 173.35988 * 6 5 2 9 9 C 1.48145 * 127.83768 * 180.02562 * 8 6 5 10 10 C 1.54391 * 104.60227 * 219.49006 * 9 8 6 11 11 H 1.08995 * 110.80978 * 216.51881 * 10 9 8 12 12 C 1.54160 * 105.01364 * 336.21131 * 10 9 8 13 13 H 1.08997 * 111.54565 * 239.63393 * 12 10 9 14 14 C 1.48149 * 127.83188 * 359.96949 * 8 6 5 15 15 C 1.53277 * 109.34826 * 116.54815 * 12 10 9 16 16 H 1.09004 * 110.49079 * 182.42286 * 15 12 10 17 17 C 1.53320 * 108.74493 * 60.44394 * 15 12 10 18 18 C 1.52932 * 109.58555 * 299.32642 * 17 15 12 19 19 C 1.52983 * 109.06250 * 93.80943 * 10 9 8 20 20 H 1.09005 * 109.63271 * 65.45712 * 19 10 9 21 21 C 1.53605 * 109.30458 * 305.25577 * 19 10 9 22 22 N 1.47635 * 106.72739 * 300.54392 * 21 19 10 23 23 C 1.36936 * 122.05648 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99919 * 179.71105 * 23 22 21 25 25 C 1.38810 * 120.00479 * 359.71510 * 23 22 21 26 26 N 1.31621 * 119.99415 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00365 * 180.27493 * 25 23 22 28 28 H 1.48502 * 109.46850 * 179.72427 * 27 25 23 29 29 H 1.48498 * 109.47066 * 299.72322 * 27 25 23 30 30 H 1.48497 * 109.46970 * 59.72497 * 27 25 23 31 31 H 1.08998 * 109.46743 * 300.00300 * 1 2 3 32 32 H 1.09004 * 109.46984 * 59.99665 * 1 2 3 33 33 H 1.08989 * 109.47430 * 180.02562 * 1 2 3 34 34 H 1.08989 * 109.47178 * 184.98148 * 3 2 1 35 35 H 1.09005 * 109.46851 * 304.98261 * 3 2 1 36 36 H 1.08999 * 109.46874 * 64.97426 * 3 2 1 37 37 H 0.96699 * 113.99794 * 300.00124 * 4 2 1 38 38 H 1.08996 * 109.46800 * 303.04354 * 5 2 1 39 39 H 1.09000 * 109.46968 * 183.04212 * 5 2 1 40 40 H 1.09001 * 110.41293 * 338.27286 * 9 8 6 41 41 H 1.09005 * 110.40997 * 100.70870 * 9 8 6 42 42 H 1.09001 * 110.40771 * 21.67915 * 14 8 6 43 43 H 1.08990 * 110.41359 * 259.23810 * 14 8 6 44 44 H 1.09002 * 109.45677 * 59.35946 * 17 15 12 45 45 H 1.09001 * 109.45497 * 179.28595 * 17 15 12 46 46 H 1.09006 * 109.37883 * 240.54204 * 18 17 15 47 47 H 1.08992 * 109.38405 * 120.87820 * 18 17 15 48 48 H 1.09000 * 110.12413 * 181.17168 * 21 19 10 49 49 H 1.08999 * 109.87116 * 59.78143 * 21 19 10 50 50 H 0.97007 * 119.99512 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.6002 -2.1621 1.2120 7 8 0.8446 -2.5434 0.3433 8 7 2.0465 -3.0272 2.1442 9 6 1.7298 -4.4688 2.2719 10 6 1.5782 -4.7010 3.7907 11 1 1.9720 -5.6770 4.0744 12 6 2.3912 -3.5697 4.4507 13 1 3.1899 -3.9645 5.0787 14 6 2.9658 -2.7524 3.2730 15 6 1.4486 -2.6737 5.2620 16 1 1.9981 -1.8418 5.7026 17 6 0.7757 -3.5218 6.3476 18 6 -0.0336 -4.6429 5.6941 19 6 0.1026 -4.5682 4.1717 20 1 -0.4700 -5.3691 3.7039 21 6 -0.4253 -3.2079 3.6916 22 7 0.3961 -2.1755 4.3541 23 6 0.1903 -0.8380 4.1446 24 1 0.8081 -0.1108 4.6504 25 6 -0.8125 -0.4167 3.2821 26 7 -1.5652 -1.3030 2.6653 27 14 -1.0882 1.4077 2.9904 28 1 -2.2055 1.5920 2.0297 29 1 -1.4268 2.0689 4.2762 30 1 0.1484 2.0123 2.4333 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 3.1264 1.4437 -0.0892 35 1 1.6058 1.9815 -0.8420 36 1 1.7514 1.9299 0.9312 37 1 1.7209 -1.5952 -1.2329 38 1 1.6328 -0.2399 2.1383 39 1 3.1286 -0.6743 1.2769 40 1 0.7974 -4.7003 1.7570 41 1 2.5448 -5.0737 1.8743 42 1 2.9662 -1.6890 3.5126 43 1 3.9741 -3.0892 3.0327 44 1 1.5383 -3.9547 6.9951 45 1 0.1116 -2.8926 6.9403 46 1 -1.0833 -4.5387 5.9689 47 1 0.3360 -5.6069 6.0435 48 1 -1.4713 -3.0904 3.9747 49 1 -0.3199 -3.1305 2.6094 50 1 -2.2657 -1.0086 2.0623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087354461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:53 Heat of formation + Delta-G solvation = -64.130600 kcal Electronic energy + Delta-G solvation = -32058.413352 eV Core-core repulsion = 28278.663853 eV Total energy + Delta-G solvation = -3779.749500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03918 -40.46064 -38.15955 -36.60984 -35.15632 -33.60254 -33.09022 -31.70111 -31.44213 -29.27073 -28.20722 -28.09725 -27.02371 -24.97611 -23.56683 -22.46040 -21.87385 -21.42607 -20.24600 -19.00208 -17.98298 -17.60969 -17.33869 -17.24337 -16.87384 -16.26285 -15.98487 -15.92009 -15.71827 -15.26911 -14.82339 -14.38779 -14.07200 -13.86573 -13.74744 -13.43099 -13.37065 -13.26762 -13.22597 -13.02429 -12.93851 -12.83924 -12.59651 -12.55759 -12.45490 -12.40084 -12.16348 -12.13399 -12.06112 -11.85430 -11.61709 -11.52801 -11.06348 -10.89422 -10.70703 -10.61390 -10.36067 -10.30123 -9.28479 -8.59291 -7.56521 -4.89688 1.38647 1.44437 1.48261 1.96828 2.38897 2.55482 3.32478 3.54116 3.65412 3.70721 3.82329 3.90965 3.94704 3.98657 4.11529 4.32208 4.40386 4.41997 4.51286 4.51423 4.59391 4.60982 4.68283 4.69783 4.79295 4.83328 4.85555 4.91200 4.99915 5.00968 5.05140 5.07723 5.11006 5.12744 5.21039 5.27347 5.32158 5.34551 5.42643 5.52388 5.55628 5.63882 5.73023 5.85087 5.99752 6.16566 6.45397 6.70095 6.96760 7.35497 7.54347 8.09842 8.61645 9.42517 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.007554 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.046440 B = 3705.654507 C = 4709.332970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.147 3.853 3 C -0.137 4.137 4 O -0.574 6.574 5 C -0.156 4.156 6 C 0.563 3.437 7 O -0.587 6.587 8 N -0.602 5.602 9 C 0.110 3.890 10 C -0.073 4.073 11 H 0.112 0.888 12 C -0.103 4.103 13 H 0.121 0.879 14 C 0.114 3.886 15 C 0.165 3.835 16 H 0.069 0.931 17 C -0.122 4.122 18 C -0.095 4.095 19 C -0.112 4.112 20 H 0.056 0.944 21 C 0.213 3.787 22 N -0.598 5.598 23 C -0.226 4.226 24 H 0.072 0.928 25 C -0.025 4.025 26 N -0.917 5.917 27 Si 0.908 3.092 28 H -0.312 1.312 29 H -0.301 1.301 30 H -0.258 1.258 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.381 0.619 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.079 0.921 48 H -0.016 1.016 49 H 0.037 0.963 50 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -5.665 3.984 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.106 3.894 3 C -0.194 4.194 4 O -0.385 6.385 5 C -0.196 4.196 6 C 0.355 3.645 7 O -0.470 6.470 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.092 4.092 11 H 0.130 0.870 12 C -0.123 4.123 13 H 0.139 0.861 14 C -0.008 4.008 15 C 0.058 3.942 16 H 0.087 0.913 17 C -0.161 4.161 18 C -0.132 4.132 19 C -0.131 4.131 20 H 0.075 0.925 21 C 0.088 3.912 22 N -0.322 5.322 23 C -0.357 4.357 24 H 0.089 0.911 25 C -0.220 4.220 26 N -0.565 5.565 27 Si 0.742 3.258 28 H -0.240 1.240 29 H -0.230 1.230 30 H -0.184 1.184 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.002 0.998 49 H 0.055 0.945 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.601 -5.136 3.224 13.984 hybrid contribution -1.883 0.874 -0.145 2.081 sum 10.718 -4.262 3.079 11.938 Atomic orbital electron populations 1.22651 0.96914 1.03800 1.00000 1.20869 0.92110 0.92804 0.83645 1.21803 1.02592 0.92505 1.02532 1.86296 1.77184 1.30557 1.44452 1.22339 1.02707 0.93128 1.01441 1.19892 0.78145 0.86945 0.79531 1.90460 1.37718 1.79430 1.39422 1.48602 1.47143 1.09567 1.27992 1.22353 1.00123 0.81775 0.97022 1.21974 0.94411 0.99719 0.93057 0.87036 1.22733 0.97951 0.95187 0.96479 0.86146 1.22453 0.92269 1.00801 0.85301 1.20940 0.89064 0.94475 0.89690 0.91261 1.21949 0.99244 0.96947 0.97958 1.21289 0.98692 0.99040 0.94207 1.21755 0.96581 0.98281 0.96483 0.92534 1.20748 0.90496 0.84360 0.95610 1.44549 1.36175 1.01207 1.50268 1.19228 1.12562 0.83593 1.20275 0.91057 1.24927 0.99188 0.97296 1.00613 1.70211 1.22895 1.30681 1.32740 0.86350 0.77902 0.85418 0.76155 1.23965 1.22992 1.18370 0.93479 0.93634 0.91040 0.90082 0.91665 0.91314 0.76774 0.87624 0.88049 0.93705 0.89655 0.91423 0.89221 0.89620 0.94856 0.95244 0.90287 0.99788 0.94523 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.84 8.54 71.98 0.61 -7.23 16 2 C 0.15 5.62 1.11 -10.79 -0.01 5.60 16 3 C -0.14 -4.43 8.84 71.98 0.64 -3.79 16 4 O -0.57 -22.12 12.93 -131.63 -1.70 -23.82 16 5 C -0.16 -5.85 3.87 29.85 0.12 -5.74 16 6 C 0.56 22.76 6.40 87.65 0.56 23.32 16 7 O -0.59 -27.52 11.82 14.30 0.17 -27.35 16 8 N -0.60 -20.59 1.98 -807.84 -1.60 -22.19 16 9 C 0.11 3.38 5.80 86.54 0.50 3.88 16 10 C -0.07 -1.91 3.17 -9.93 -0.03 -1.94 16 11 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.10 -2.53 3.21 -9.82 -0.03 -2.56 16 13 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 14 C 0.11 3.05 6.03 86.55 0.52 3.57 16 15 C 0.17 5.26 2.89 44.97 0.13 5.39 16 16 H 0.07 2.17 7.99 -2.39 -0.02 2.15 16 17 C -0.12 -3.52 5.85 30.68 0.18 -3.35 16 18 C -0.09 -2.82 5.65 30.58 0.17 -2.65 16 19 C -0.11 -3.80 2.70 -10.58 -0.03 -3.83 16 20 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 21 C 0.21 9.75 3.64 86.37 0.31 10.06 16 22 N -0.60 -25.49 2.01 -670.11 -1.35 -26.84 16 23 C -0.23 -10.95 8.63 84.03 0.72 -10.22 16 24 H 0.07 3.36 7.79 -2.91 -0.02 3.33 16 25 C -0.03 -1.31 4.67 84.86 0.40 -0.92 16 26 N -0.92 -51.91 9.77 21.65 0.21 -51.70 16 27 Si 0.91 43.77 25.97 68.60 1.78 45.55 16 28 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H -0.26 -11.33 6.35 99.48 0.63 -10.70 16 31 H 0.05 2.20 3.20 -2.39 -0.01 2.19 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 3.62 5.54 -2.39 -0.01 3.61 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 2.24 7.38 -2.39 -0.02 2.22 16 37 H 0.38 15.03 6.51 -74.06 -0.48 14.55 16 38 H 0.11 4.41 6.09 -2.39 -0.01 4.40 16 39 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.04 1.70 7.02 -2.39 -0.02 1.68 16 41 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.07 2.00 7.12 -2.39 -0.02 1.98 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H -0.02 -0.91 7.24 -2.39 -0.02 -0.92 16 49 H 0.04 1.92 4.26 -2.39 -0.01 1.91 16 50 H 0.23 13.72 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -64.58 350.34 2.66 -61.92 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.38 Total: 34.83 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.77 Total: 9.61 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -2.73 Total: -100.73 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -1.53 Total: -51.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.78 Total: 45.55 kcal Total: -64.58 2.66 -61.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.214 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds