Wall clock time and date at job start Fri Apr 10 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47367 * 2 1 4 4 O 1.42898 * 109.46870 * 120.00658 * 2 1 3 5 5 C 1.53002 * 109.46634 * 240.00078 * 2 1 3 6 6 C 1.50701 * 109.46849 * 180.02562 * 5 2 1 7 7 O 1.21281 * 119.99998 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00073 * 180.02562 * 6 5 2 9 9 C 1.49797 * 125.85286 * 179.97438 * 8 6 5 10 10 C 1.49066 * 102.16525 * 202.90217 * 9 8 6 11 11 H 1.08990 * 105.46526 * 64.58550 * 10 9 8 12 12 C 1.56047 * 101.91786 * 316.97187 * 10 9 8 13 13 H 1.08998 * 111.26766 * 289.94772 * 12 10 9 14 14 C 1.48971 * 125.84960 * 359.69143 * 8 6 5 15 15 C 1.52944 * 103.30718 * 170.34931 * 12 10 9 16 16 H 1.09003 * 114.32165 * 209.78892 * 15 12 10 17 17 C 1.56524 * 102.25394 * 84.54000 * 15 12 10 18 18 C 1.52289 * 107.13796 * 323.94119 * 17 15 12 19 19 C 1.49338 * 130.40821 * 191.66927 * 10 9 8 20 20 H 1.09001 * 113.73197 * 332.65305 * 19 10 9 21 21 C 1.57539 * 101.93700 * 209.37838 * 19 10 9 22 22 N 1.48647 * 103.46099 * 323.56368 * 21 19 10 23 23 C 1.36936 * 122.22825 * 143.44462 * 22 21 19 24 24 H 1.08004 * 119.99373 * 201.91992 * 23 22 21 25 25 C 1.38803 * 120.00190 * 21.92425 * 23 22 21 26 26 N 1.31618 * 120.00034 * 10.60952 * 25 23 22 27 27 Si 1.86797 * 120.00138 * 190.60256 * 25 23 22 28 28 H 1.48499 * 109.47213 * 90.00154 * 27 25 23 29 29 H 1.48505 * 109.47349 * 210.00441 * 27 25 23 30 30 H 1.48502 * 109.47326 * 330.00319 * 27 25 23 31 31 H 1.09003 * 109.46750 * 300.00316 * 1 2 3 32 32 H 1.09001 * 109.46897 * 59.99427 * 1 2 3 33 33 H 1.09000 * 109.47873 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47089 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47580 * 300.00155 * 3 2 1 36 36 H 1.09005 * 109.47177 * 60.00564 * 3 2 1 37 37 H 0.96694 * 114.00813 * 59.99441 * 4 2 1 38 38 H 1.09000 * 109.47394 * 299.99678 * 5 2 1 39 39 H 1.09001 * 109.47074 * 60.00604 * 5 2 1 40 40 H 1.09007 * 110.86362 * 321.06799 * 9 8 6 41 41 H 1.09000 * 110.86506 * 84.72869 * 9 8 6 42 42 H 1.09004 * 110.26484 * 305.94853 * 14 8 6 43 43 H 1.09003 * 110.26931 * 68.00218 * 14 8 6 44 44 H 1.09000 * 109.90432 * 82.80432 * 17 15 12 45 45 H 1.09000 * 109.90208 * 203.94909 * 17 15 12 46 46 H 1.09003 * 109.05638 * 204.35400 * 18 17 15 47 47 H 1.08994 * 109.78568 * 84.35785 * 18 17 15 48 48 H 1.09002 * 110.37031 * 205.24260 * 21 19 10 49 49 H 1.08994 * 111.15011 * 82.26495 * 21 19 10 50 50 H 0.97005 * 119.99953 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0399 -0.7213 -1.2493 6 6 3.5469 -0.7218 -1.2490 7 8 4.1533 -0.1967 -0.3395 8 7 4.2207 -1.3051 -2.2601 9 6 5.7109 -1.3815 -2.3924 10 6 5.8865 -1.5735 -3.8602 11 1 5.5111 -0.6593 -4.3198 12 6 4.7756 -2.6206 -4.1834 13 1 5.0191 -3.5972 -3.7650 14 6 3.6112 -1.9894 -3.4345 15 6 4.7604 -2.6572 -5.7123 16 1 3.7897 -2.8977 -6.1460 17 6 5.9050 -3.6759 -6.0316 18 6 6.9981 -3.4629 -4.9928 19 6 7.0964 -1.9533 -4.6489 20 1 8.0358 -1.6642 -4.1777 21 6 6.8230 -1.2422 -6.0278 22 7 5.3525 -1.3754 -6.2002 23 6 4.5916 -0.3890 -6.7688 24 1 3.5310 -0.3431 -6.5701 25 6 5.1834 0.5517 -7.6003 26 7 6.4222 0.3807 -8.0107 27 14 4.2216 2.0603 -8.1372 28 1 4.4340 3.1570 -7.1587 29 1 4.6903 2.4952 -9.4776 30 1 2.7756 1.7283 -8.2023 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3635 -1.0276 -0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8901 37 1 1.7209 -1.5953 1.2329 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2073 -2.1393 40 1 6.1779 -0.4530 -2.0637 41 1 6.1066 -2.2333 -1.8393 42 1 2.9125 -2.7576 -3.1032 43 1 3.1032 -1.2655 -4.0717 44 1 5.5262 -4.6952 -5.9567 45 1 6.2930 -3.4959 -7.0342 46 1 7.9488 -3.8060 -5.4010 47 1 6.7643 -4.0274 -4.0902 48 1 7.3510 -1.7561 -6.8310 49 1 7.1111 -0.1916 -5.9924 50 1 6.8357 1.0380 -8.5921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087354462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:57 Heat of formation + Delta-G solvation = -18.031308 kcal Electronic energy + Delta-G solvation = -29752.260733 eV Core-core repulsion = 25974.510249 eV Total energy + Delta-G solvation = -3777.750484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03310 -39.56460 -37.46211 -35.75540 -33.25199 -32.71541 -31.14114 -30.51253 -29.90903 -28.33331 -27.33939 -27.06870 -25.30290 -23.71373 -21.81849 -20.87646 -20.68378 -20.25965 -19.09366 -17.44118 -16.96208 -16.80946 -16.51298 -15.56317 -15.50871 -15.04337 -14.78871 -14.54388 -14.27550 -14.19261 -13.99053 -13.14124 -13.05385 -12.73836 -12.54269 -12.35024 -12.22706 -12.16436 -12.05171 -11.79092 -11.67467 -11.41109 -11.36448 -11.17799 -11.06330 -10.96193 -10.82406 -10.71279 -10.66971 -10.31754 -10.13850 -10.08990 -10.02731 -9.71390 -9.33236 -9.18636 -8.99215 -8.54074 -8.29626 -6.78971 -5.82929 -3.21718 2.92844 3.14661 3.33784 3.39956 3.41586 4.19465 4.40941 4.56164 4.62568 4.79454 4.88561 4.98331 5.08681 5.27780 5.30197 5.36552 5.45271 5.47009 5.51030 5.53497 5.61352 5.69917 5.75450 5.76917 5.82742 5.86310 5.89233 5.95029 5.96731 6.05221 6.09058 6.22082 6.29812 6.35806 6.39634 6.46427 6.49374 6.53168 6.63195 6.82065 6.89875 7.02930 7.26421 7.38779 7.57629 7.68671 7.73462 7.84275 8.24950 8.48398 9.10875 9.72414 10.34227 11.26950 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.004444 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.825775 B = 6298.746964 C = 7636.613797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.146 3.854 3 C -0.153 4.153 4 O -0.544 6.544 5 C -0.165 4.165 6 C 0.528 3.472 7 O -0.530 6.530 8 N -0.622 5.622 9 C 0.136 3.864 10 C -0.125 4.125 11 H 0.105 0.895 12 C -0.130 4.130 13 H 0.074 0.926 14 C 0.115 3.885 15 C 0.177 3.823 16 H 0.082 0.918 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.099 4.099 20 H 0.077 0.923 21 C 0.190 3.810 22 N -0.593 5.593 23 C -0.247 4.247 24 H 0.068 0.932 25 C 0.002 3.998 26 N -0.910 5.910 27 Si 0.902 3.098 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.366 0.634 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.033 0.967 49 H 0.075 0.925 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -6.879 10.719 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.104 3.896 3 C -0.210 4.210 4 O -0.348 6.348 5 C -0.206 4.206 6 C 0.316 3.684 7 O -0.407 6.407 8 N -0.357 5.357 9 C 0.015 3.985 10 C -0.144 4.144 11 H 0.122 0.878 12 C -0.151 4.151 13 H 0.093 0.907 14 C -0.006 4.006 15 C 0.069 3.931 16 H 0.100 0.900 17 C -0.169 4.169 18 C -0.144 4.144 19 C -0.119 4.119 20 H 0.095 0.905 21 C 0.065 3.935 22 N -0.316 5.316 23 C -0.376 4.376 24 H 0.085 0.915 25 C -0.196 4.196 26 N -0.555 5.555 27 Si 0.733 3.267 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.212 0.788 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.093 0.907 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.634 -5.792 11.203 14.250 hybrid contribution -0.902 0.147 -0.687 1.143 sum -7.536 -5.645 10.517 14.116 Atomic orbital electron populations 1.22520 0.95739 1.02303 1.03014 1.20897 0.91561 0.93525 0.83573 1.21993 1.05146 0.92480 1.01341 1.86707 1.77096 1.27849 1.43121 1.22447 0.93688 1.03022 1.01417 1.20024 0.89391 0.78085 0.80891 1.90653 1.70064 1.44824 1.35199 1.49766 1.07461 1.56101 1.22414 1.21022 0.79747 1.00957 0.96752 1.21153 0.97123 1.03295 0.92862 0.87751 1.23207 0.94912 0.98019 0.98968 0.90749 1.21795 0.96298 0.95860 0.86695 1.21656 0.95099 0.86887 0.89471 0.89994 1.22610 0.96846 0.97706 0.99708 1.21834 0.98246 0.96342 0.98013 1.22105 0.95661 0.95483 0.98673 0.90487 1.22178 0.83073 0.99055 0.89173 1.45486 1.03466 1.13240 1.69416 1.19132 0.92278 1.04620 1.21553 0.91473 1.24944 0.96839 1.00142 0.97640 1.69943 1.13053 1.35520 1.37021 0.86291 0.79259 0.83408 0.77787 1.21591 1.21736 1.20614 0.91567 0.91446 0.92422 0.88920 0.91962 0.92482 0.78843 0.89194 0.88210 0.90952 0.92634 0.92357 0.90881 0.93486 0.90996 0.93094 0.93145 0.94864 0.90703 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.81 37.16 0.33 -1.23 16 2 C 0.15 1.71 0.98 -90.62 -0.09 1.62 16 3 C -0.15 -2.02 8.52 37.15 0.32 -1.70 16 4 O -0.54 -7.07 11.88 -53.50 -0.64 -7.70 16 5 C -0.17 -1.96 4.17 -27.88 -0.12 -2.08 16 6 C 0.53 8.40 7.43 -10.99 -0.08 8.32 16 7 O -0.53 -10.14 13.30 -12.71 -0.17 -10.31 16 8 N -0.62 -9.86 3.42 -171.67 -0.59 -10.45 16 9 C 0.14 2.24 6.83 -4.14 -0.03 2.21 16 10 C -0.12 -2.16 2.31 -92.73 -0.21 -2.37 16 11 H 0.10 2.24 5.63 -51.93 -0.29 1.95 16 12 C -0.13 -2.02 2.45 -89.45 -0.22 -2.24 16 13 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 14 C 0.12 1.68 6.17 -3.11 -0.02 1.66 16 15 C 0.18 3.17 4.51 -64.45 -0.29 2.87 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 17 C -0.13 -2.14 5.43 -25.20 -0.14 -2.27 16 18 C -0.11 -1.64 5.24 -25.97 -0.14 -1.78 16 19 C -0.10 -1.71 4.46 -88.82 -0.40 -2.11 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.19 4.16 4.08 -0.38 0.00 4.16 16 22 N -0.59 -13.20 1.73 -156.80 -0.27 -13.47 16 23 C -0.25 -6.23 9.71 -15.06 -0.15 -6.38 16 24 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 25 C 0.00 0.06 5.20 -17.43 -0.09 -0.03 16 26 N -0.91 -25.19 10.86 55.49 0.60 -24.59 16 27 Si 0.90 21.17 29.57 -169.99 -5.03 16.14 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.52 5.51 -51.93 -0.29 1.24 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.37 3.28 9.05 45.56 0.41 3.69 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.36 7.18 -51.93 -0.37 0.99 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.71 6.79 -51.93 -0.35 0.35 16 48 H 0.03 0.79 7.10 -51.93 -0.37 0.42 16 49 H 0.07 1.88 6.75 -51.93 -0.35 1.53 16 50 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -30.10 370.97 -9.64 -39.74 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.83 Total: 6.40 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.32 Total: -1.35 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.26 Total: -48.51 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.80 Total: -18.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.10 -9.64 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.709 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds