Wall clock time and date at job start Fri Apr 10 2020 18:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47146 * 2 1 4 4 O 1.42896 * 109.47215 * 240.00323 * 2 1 3 5 5 C 1.53002 * 109.47157 * 119.99542 * 2 1 3 6 6 C 1.50701 * 109.46520 * 62.77467 * 5 2 1 7 7 O 1.21283 * 120.00400 * 6.16297 * 6 5 2 8 8 N 1.34782 * 119.99831 * 186.15626 * 6 5 2 9 9 C 1.48168 * 127.83457 * 0.02562 * 8 6 5 10 10 C 1.54371 * 104.54336 * 140.30606 * 9 8 6 11 11 H 1.09005 * 110.93501 * 264.33269 * 10 9 8 12 12 C 1.54158 * 104.99895 * 24.22928 * 10 9 8 13 13 H 1.08996 * 111.36759 * 239.46760 * 12 10 9 14 14 C 1.48131 * 127.83690 * 180.02562 * 8 6 5 15 15 C 1.53029 * 109.71894 * 116.39339 * 12 10 9 16 16 H 1.09003 * 109.63637 * 179.97438 * 15 12 10 17 17 C 1.53036 * 109.21966 * 300.70287 * 15 12 10 18 18 C 1.53414 * 109.88775 * 59.08639 * 17 15 12 19 19 C 1.52760 * 109.08556 * 141.47472 * 10 9 8 20 20 H 1.09006 * 110.37684 * 68.10450 * 19 10 9 21 21 N 1.47693 * 108.30642 * 189.19703 * 19 10 9 22 22 C 1.36935 * 122.07318 * 238.77286 * 21 19 10 23 23 H 1.08000 * 119.99569 * 359.71289 * 22 21 19 24 24 C 1.38810 * 120.00072 * 179.71011 * 22 21 19 25 25 N 1.31615 * 120.00173 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99696 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47472 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46846 * 120.00276 * 26 24 22 29 29 H 1.48500 * 109.47356 * 239.99912 * 26 24 22 30 30 C 1.47640 * 115.85852 * 58.50030 * 21 19 10 31 31 H 1.09000 * 109.47373 * 300.00218 * 1 2 3 32 32 H 1.08998 * 109.47149 * 59.99738 * 1 2 3 33 33 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47220 * 180.41367 * 3 2 1 35 35 H 1.08997 * 109.46870 * 300.41753 * 3 2 1 36 36 H 1.09009 * 109.47103 * 60.40895 * 3 2 1 37 37 H 0.96695 * 114.00148 * 59.99855 * 4 2 1 38 38 H 1.09003 * 109.47035 * 302.77873 * 5 2 1 39 39 H 1.08998 * 109.47058 * 182.77375 * 5 2 1 40 40 H 1.08993 * 110.42270 * 259.07673 * 9 8 6 41 41 H 1.08999 * 110.42105 * 21.54091 * 9 8 6 42 42 H 1.08994 * 110.40484 * 100.61573 * 14 8 6 43 43 H 1.09002 * 110.49920 * 338.25425 * 14 8 6 44 44 H 1.09003 * 109.38318 * 179.48049 * 17 15 12 45 45 H 1.08994 * 109.38106 * 299.15076 * 17 15 12 46 46 H 1.08995 * 109.57625 * 240.89988 * 18 17 15 47 47 H 1.08999 * 109.37323 * 120.91345 * 18 17 15 48 48 H 0.96998 * 120.00018 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.99621 * 119.71315 * 30 21 19 50 50 H 1.08999 * 109.99443 * 241.00140 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 1.5945 -2.1604 1.2154 7 8 1.0315 -2.5981 0.2344 8 7 1.8220 -2.9614 2.2753 9 6 2.4882 -2.6123 3.5518 10 6 1.6641 -3.3449 4.6322 11 1 0.9163 -2.6820 5.0677 12 6 0.9944 -4.5209 3.8940 13 1 -0.0920 -4.4652 3.9616 14 6 1.4625 -4.3903 2.4281 15 6 1.5075 -5.8462 4.4616 16 1 1.0328 -6.6767 3.9391 17 6 3.0264 -5.9143 4.2877 18 6 3.6883 -4.7368 5.0150 19 6 2.6115 -3.8876 5.7006 20 1 3.0604 -3.0679 6.2616 21 7 1.8400 -4.7688 6.6004 22 6 1.7472 -4.5323 7.9460 23 1 2.2513 -3.6819 8.3807 24 6 1.0052 -5.3855 8.7511 25 7 0.3912 -6.4222 8.2213 26 14 0.8792 -5.0632 10.5868 27 1 1.6550 -3.8443 10.9298 28 1 -0.5448 -4.8637 10.9577 29 1 1.4268 -6.2250 11.3321 30 6 1.1698 -5.9170 5.9583 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0074 35 1 1.6706 1.9585 -0.8862 36 1 1.6827 1.9543 0.8937 37 1 1.7210 -0.2700 -1.9979 38 1 1.6365 -0.2368 2.1386 39 1 3.1289 -0.6783 1.2745 40 1 3.5184 -2.9682 3.5529 41 1 2.4570 -1.5351 3.7150 42 1 2.3324 -5.0222 2.2493 43 1 0.6545 -4.6557 1.7462 44 1 3.3960 -6.8535 4.6995 45 1 3.2716 -5.8652 3.2268 46 1 4.2320 -4.1230 4.2969 47 1 4.3815 -5.1184 5.7646 48 1 -0.1270 -7.0186 8.7840 49 1 1.5424 -6.8500 6.3808 50 1 0.0916 -5.8474 6.1022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087354463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:00 Heat of formation + Delta-G solvation = -48.540837 kcal Electronic energy + Delta-G solvation = -29423.546521 eV Core-core repulsion = 25644.473044 eV Total energy + Delta-G solvation = -3779.073477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82320 -39.44889 -37.50672 -35.61267 -33.25187 -32.80910 -31.75973 -30.39503 -29.89811 -28.58255 -27.49392 -27.05899 -25.35213 -23.73785 -22.01894 -21.06450 -20.95558 -20.49266 -19.09597 -17.42730 -17.00547 -16.55350 -16.41311 -15.85572 -15.39961 -15.23319 -14.79505 -14.75641 -14.19044 -14.01144 -13.78752 -13.49971 -13.14511 -12.89855 -12.54813 -12.38856 -12.24768 -12.15265 -12.06395 -11.98349 -11.91127 -11.54193 -11.47386 -11.27364 -11.12032 -10.99437 -10.91726 -10.76005 -10.55559 -10.39902 -10.15917 -10.13818 -9.87371 -9.66343 -9.44197 -9.29495 -9.19542 -8.50122 -8.38822 -6.85739 -5.66667 -3.03700 2.84343 3.12815 3.38700 3.44504 3.46835 4.04576 4.46151 4.50845 4.52639 4.78963 4.89429 4.92778 5.08474 5.21072 5.25163 5.33411 5.36634 5.36774 5.44319 5.50291 5.56877 5.58396 5.61541 5.63749 5.72335 5.78779 5.81226 5.83024 5.87908 6.06185 6.09661 6.16340 6.18189 6.23982 6.25209 6.40595 6.48862 6.54537 6.70084 6.77943 6.86891 6.94366 7.01974 7.60937 7.63689 7.70853 7.80748 7.91279 8.31767 8.40006 9.25367 9.86422 10.40512 11.38561 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.003173 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.498779 B = 8822.450120 C = 9268.100649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.143 3.857 3 C -0.179 4.179 4 O -0.544 6.544 5 C -0.125 4.125 6 C 0.534 3.466 7 O -0.529 6.529 8 N -0.624 5.624 9 C 0.095 3.905 10 C -0.105 4.105 11 H 0.078 0.922 12 C -0.078 4.078 13 H 0.075 0.925 14 C 0.102 3.898 15 C -0.111 4.111 16 H 0.065 0.935 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.181 3.819 20 H 0.067 0.933 21 N -0.600 5.600 22 C -0.234 4.234 23 H 0.075 0.925 24 C -0.008 4.008 25 N -0.922 5.922 26 Si 0.908 3.092 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.203 3.797 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.370 0.630 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.250 0.750 49 H 0.051 0.949 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 11.706 -14.383 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.102 3.898 3 C -0.236 4.236 4 O -0.348 6.348 5 C -0.165 4.165 6 C 0.322 3.678 7 O -0.405 6.405 8 N -0.358 5.358 9 C -0.028 4.028 10 C -0.127 4.127 11 H 0.096 0.904 12 C -0.098 4.098 13 H 0.093 0.907 14 C -0.020 4.020 15 C -0.130 4.130 16 H 0.083 0.917 17 C -0.142 4.142 18 C -0.173 4.173 19 C 0.072 3.928 20 H 0.086 0.914 21 N -0.323 5.323 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.739 3.261 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C 0.079 3.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.217 0.783 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.055 11.032 -14.403 18.590 hybrid contribution -0.412 0.540 0.760 1.019 sum 3.643 11.573 -13.643 18.257 Atomic orbital electron populations 1.22619 0.95480 1.04455 1.01706 1.20816 0.93079 0.90105 0.85829 1.22523 1.02137 0.96277 1.02699 1.86680 1.76370 1.56809 1.14973 1.21717 1.03280 0.93248 0.98277 1.20005 0.79150 0.87235 0.81383 1.90675 1.42298 1.75854 1.31711 1.49100 1.58800 1.12046 1.15854 1.22868 0.97484 0.99768 0.82684 1.22605 0.98432 0.96257 0.95395 0.90363 1.21932 0.99764 0.95866 0.92230 0.90682 1.22668 1.00587 0.81419 0.97279 1.21805 0.95142 0.95339 1.00712 0.91671 1.21544 0.95607 0.98600 0.98484 1.22266 0.98742 0.97398 0.98911 1.20401 0.90325 0.92318 0.89744 0.91443 1.44620 1.57262 1.27125 1.03305 1.19313 1.25866 1.08563 0.82555 0.90708 1.24785 1.00024 0.97596 0.98014 1.70035 1.37170 1.16530 1.33276 0.86104 0.77283 0.77278 0.85432 1.20618 1.21905 1.21886 1.21107 0.96661 0.90351 0.83994 0.92257 0.92652 0.89814 0.91750 0.92090 0.91488 0.78347 0.88066 0.88470 0.90021 0.91179 0.90580 0.90934 0.92485 0.93208 0.92904 0.92160 0.93932 0.93053 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.53 37.16 0.32 -1.60 16 2 C 0.14 1.45 0.98 -90.62 -0.09 1.36 16 3 C -0.18 -1.30 8.82 37.16 0.33 -0.98 16 4 O -0.54 -6.43 11.54 -55.90 -0.64 -7.07 16 5 C -0.13 -1.37 4.07 -27.88 -0.11 -1.48 16 6 C 0.53 7.89 7.40 -10.98 -0.08 7.81 16 7 O -0.53 -9.51 13.47 -15.11 -0.20 -9.71 16 8 N -0.62 -9.00 3.32 -169.28 -0.56 -9.56 16 9 C 0.10 1.24 6.21 -2.41 -0.01 1.22 16 10 C -0.11 -1.71 3.32 -89.42 -0.30 -2.00 16 11 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 12 C -0.08 -1.31 3.14 -89.25 -0.28 -1.59 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.10 1.56 6.34 -2.39 -0.02 1.54 16 15 C -0.11 -1.98 2.86 -90.28 -0.26 -2.24 16 16 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.10 -1.71 5.34 -26.50 -0.14 -1.85 16 18 C -0.13 -2.18 5.54 -26.35 -0.15 -2.33 16 19 C 0.18 3.32 3.18 -67.23 -0.21 3.11 16 20 H 0.07 1.21 7.99 -51.93 -0.42 0.80 16 21 N -0.60 -14.04 2.88 -163.44 -0.47 -14.51 16 22 C -0.23 -6.15 9.99 -15.06 -0.15 -6.30 16 23 H 0.08 1.90 7.79 -52.49 -0.41 1.49 16 24 C -0.01 -0.23 5.47 -17.43 -0.10 -0.32 16 25 N -0.92 -26.15 9.77 55.49 0.54 -25.61 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.20 4.69 4.37 -3.11 -0.01 4.67 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.14 5.98 -51.93 -0.31 0.83 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.37 2.90 9.04 45.56 0.41 3.32 16 38 H 0.10 0.92 7.67 -51.93 -0.40 0.52 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.02 5.18 -51.93 -0.27 0.75 16 41 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 42 H 0.08 1.12 5.31 -51.93 -0.28 0.85 16 43 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.72 5.79 -51.93 -0.30 0.42 16 46 H 0.05 0.73 5.63 -51.93 -0.29 0.43 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 49 H 0.05 1.34 7.22 -51.93 -0.37 0.97 16 50 H 0.05 1.27 7.23 -51.93 -0.38 0.90 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -31.58 365.13 -9.70 -41.28 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.57 Total: 4.12 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.26 Total: -0.98 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.49 Total: -49.68 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.85 Total: -16.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.58 -9.70 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087354463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.261 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds