Wall clock time and date at job start Fri Apr 10 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47076 * 264.87682 * 3 2 1 5 5 H 1.48495 * 109.47256 * 24.87347 * 3 2 1 6 6 H 1.48498 * 109.47356 * 144.87560 * 3 2 1 7 7 C 1.38815 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99630 * 30.19396 * 7 2 1 9 9 N 1.36934 * 120.00036 * 210.19279 * 7 2 1 10 10 C 1.46931 * 120.63381 * 42.33331 * 9 7 2 11 11 C 1.53186 * 108.77788 * 126.38881 * 10 9 7 12 12 C 1.53042 * 109.31170 * 54.63495 * 11 10 9 13 13 C 1.53042 * 109.54024 * 298.63202 * 12 11 10 14 14 C 1.46933 * 120.62967 * 222.32602 * 9 7 2 15 15 H 1.09004 * 109.69862 * 113.75074 * 14 9 7 16 16 C 1.52992 * 109.58471 * 353.40067 * 14 9 7 17 17 N 1.46501 * 109.47472 * 55.32321 * 16 14 9 18 18 C 1.34777 * 120.00116 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99929 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99898 * 179.97438 * 18 17 16 21 21 C 1.53247 * 109.62273 * 299.07937 * 20 18 17 22 22 C 1.50586 * 109.17184 * 184.67913 * 21 20 18 23 23 O 1.21224 * 119.36104 * 209.07740 * 22 21 20 24 24 N 1.34143 * 121.27673 * 29.07624 * 22 21 20 25 25 C 1.34137 * 122.59301 * 359.45994 * 24 22 21 26 26 O 1.21220 * 119.36416 * 180.54955 * 25 24 22 27 27 C 1.50592 * 121.27570 * 0.55950 * 25 24 22 28 28 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58163 * 6.59784 * 10 9 7 30 30 H 1.08999 * 109.69967 * 246.25170 * 10 9 7 31 31 H 1.09005 * 109.49482 * 294.68459 * 11 10 9 32 32 H 1.08998 * 109.49691 * 174.58808 * 11 10 9 33 33 H 1.09008 * 109.45669 * 178.61140 * 12 11 10 34 34 H 1.08998 * 109.46170 * 58.65583 * 12 11 10 35 35 H 1.09005 * 109.49666 * 301.41553 * 13 12 11 36 36 H 1.09001 * 109.49884 * 181.31660 * 13 12 11 37 37 H 1.08997 * 109.47657 * 295.31881 * 16 14 9 38 38 H 1.09003 * 109.47187 * 175.32060 * 16 14 9 39 39 H 0.97001 * 119.99876 * 0.02562 * 17 16 14 40 40 H 1.08991 * 109.62206 * 59.63498 * 20 18 17 41 41 H 1.09002 * 109.51951 * 304.56702 * 21 20 18 42 42 H 1.09001 * 109.52257 * 64.75785 * 21 20 18 43 43 H 0.96999 * 118.70229 * 179.43401 * 24 22 21 44 44 H 1.09005 * 109.52249 * 210.98327 * 27 25 24 45 45 H 1.09002 * 109.52021 * 90.79576 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6060 1.9839 -1.3945 5 1 1.3978 2.6815 0.5889 6 1 3.4894 1.4739 0.8055 7 6 2.0103 -1.2022 0.0005 8 1 1.5801 -2.0742 -0.4695 9 7 3.2403 -1.2824 0.5970 10 6 3.4871 -0.6370 1.8937 11 6 4.0528 -1.6791 2.8634 12 6 5.2892 -2.3314 2.2406 13 6 4.8946 -3.0423 0.9440 14 6 4.3384 -2.0156 -0.0476 15 1 5.1269 -1.3195 -0.3337 16 6 3.8138 -2.7357 -1.2913 17 7 3.1673 -1.7671 -2.1802 18 6 2.6279 -2.1770 -3.3453 19 8 2.6774 -3.3478 -3.6577 20 6 1.9624 -1.1807 -4.2594 21 6 0.7791 -0.5289 -3.5358 22 6 0.0526 0.3781 -4.4935 23 8 -0.5324 1.3492 -4.0646 24 7 0.0404 0.1321 -5.8122 25 6 0.6742 -0.9168 -6.3575 26 8 0.6328 -1.0777 -7.5582 27 6 1.4361 -1.8984 -5.5068 28 1 -0.4850 0.8401 0.0004 29 1 2.5516 -0.2404 2.2883 30 1 4.2044 0.1743 1.7697 31 1 3.2986 -2.4415 3.0588 32 1 4.3301 -1.1929 3.7987 33 1 5.7082 -3.0560 2.9390 34 1 6.0332 -1.5652 2.0227 35 1 4.1326 -3.7919 1.1575 36 1 5.7711 -3.5263 0.5132 37 1 3.0905 -3.4949 -0.9937 38 1 4.6444 -3.2103 -1.8139 39 1 3.1280 -0.8306 -1.9305 40 1 2.6815 -0.4161 -4.5530 41 1 0.0987 -1.3027 -3.1802 42 1 1.1451 0.0527 -2.6897 43 1 -0.4464 0.7364 -6.3942 44 1 2.2740 -2.3005 -6.0764 45 1 0.7744 -2.7113 -5.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024705892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:57 Heat of formation + Delta-G solvation = -90.980597 kcal Electronic energy + Delta-G solvation = -29326.597218 eV Core-core repulsion = 25344.424409 eV Total energy + Delta-G solvation = -3982.172808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46318 -39.43467 -38.73552 -38.02830 -35.32609 -34.38844 -33.69004 -33.09201 -31.00458 -30.73564 -28.68618 -26.58989 -25.30852 -23.81107 -23.09749 -22.52521 -20.88781 -20.01400 -19.41097 -19.21036 -17.73241 -17.24880 -17.08200 -16.37341 -15.70428 -15.69269 -15.36192 -14.97027 -14.76064 -14.53130 -14.27718 -13.94776 -13.81716 -13.61461 -13.43442 -13.22559 -13.10118 -12.59392 -12.33558 -12.27638 -12.02663 -11.66147 -11.41338 -11.32728 -11.16254 -10.87569 -10.71968 -10.66238 -10.55647 -10.25476 -10.23109 -10.16646 -9.90509 -9.78098 -9.64665 -9.32766 -8.64346 -8.33283 -6.83340 -6.21990 -3.60427 1.53909 2.75887 2.80841 3.01175 3.19569 3.37784 3.39840 3.61638 4.06154 4.38094 4.48453 4.67128 4.71040 4.81658 5.02158 5.08248 5.27370 5.34455 5.41480 5.46482 5.51633 5.66150 5.73084 5.83424 5.87599 5.94191 6.01817 6.09661 6.14203 6.16813 6.20210 6.38442 6.40386 6.45919 6.56075 6.73036 6.80239 6.87619 6.97558 7.04313 7.36470 7.85684 7.86378 8.10331 8.27267 8.69793 8.80489 9.51509 10.02456 10.90640 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.004918 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.880312 B = 5692.090888 C = 7040.868552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.052 3.948 3 Si 0.824 3.176 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.279 4.279 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.142 3.858 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.155 3.845 15 H 0.034 0.966 16 C 0.137 3.863 17 N -0.683 5.683 18 C 0.518 3.482 19 O -0.557 6.557 20 C -0.113 4.113 21 C -0.132 4.132 22 C 0.527 3.473 23 O -0.492 6.492 24 N -0.678 5.678 25 C 0.530 3.470 26 O -0.511 6.511 27 C -0.121 4.121 28 H 0.267 0.733 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.409 0.591 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -2.001 -3.582 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.152 4.152 3 Si 0.650 3.350 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.179 1.179 7 C -0.407 4.407 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.017 3.983 11 C -0.177 4.177 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.049 3.951 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.334 5.334 18 C 0.302 3.698 19 O -0.438 6.438 20 C -0.135 4.135 21 C -0.172 4.172 22 C 0.316 3.684 23 O -0.363 6.363 24 N -0.344 5.344 25 C 0.319 3.681 26 O -0.384 6.384 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.248 0.752 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.593 -2.436 -4.024 8.099 hybrid contribution 0.052 1.893 0.036 1.894 sum 6.645 -0.543 -3.988 7.768 Atomic orbital electron populations 1.69967 1.05950 1.27325 1.47456 1.25581 0.94795 0.97122 0.97696 0.87757 0.81945 0.86428 0.78834 1.21147 1.22020 1.17916 1.18692 0.91761 0.95030 1.35236 0.90212 1.44325 1.08577 1.61940 1.17511 1.21371 0.98755 0.92849 0.85337 1.22050 0.97435 1.00093 0.98140 1.21364 0.97653 0.98963 0.96622 1.21913 0.99994 0.98524 0.96187 1.20860 0.90848 0.92686 0.90680 0.94806 1.21255 0.96288 0.91767 0.89407 1.46095 1.55995 1.13412 1.17915 1.19854 0.79222 0.88566 0.82122 1.90666 1.60113 1.17967 1.75005 1.21479 0.98307 0.98654 0.95022 1.22012 0.96947 1.00396 0.97838 1.21051 0.79632 0.85771 0.81965 1.90801 1.41339 1.27710 1.76447 1.44963 1.50409 1.28513 1.10487 1.21006 0.77506 0.80780 0.88761 1.90762 1.59457 1.72878 1.15312 1.21757 1.02075 0.97245 0.94962 0.92238 0.91661 0.95601 0.92014 0.93261 0.93241 0.92860 0.91683 0.92726 0.91280 0.92379 0.74848 0.87678 0.85744 0.85040 0.75235 0.86261 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.43 13.97 55.49 0.78 -21.66 16 2 C 0.05 1.23 4.02 -17.43 -0.07 1.16 16 3 Si 0.82 18.25 26.96 -169.99 -4.58 13.67 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.25 -5.41 4.86 56.52 0.27 -5.13 16 7 C -0.28 -6.21 6.36 -15.06 -0.10 -6.30 16 8 H 0.08 1.98 6.70 -52.48 -0.35 1.63 16 9 N -0.60 -11.66 2.42 -164.78 -0.40 -12.06 16 10 C 0.14 2.68 4.49 -3.71 -0.02 2.66 16 11 C -0.14 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.11 -1.50 5.88 -26.69 -0.16 -1.65 16 13 C -0.13 -1.81 5.37 -26.61 -0.14 -1.95 16 14 C 0.16 2.55 3.08 -67.60 -0.21 2.34 16 15 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 16 C 0.14 2.23 4.50 -4.05 -0.02 2.21 16 17 N -0.68 -11.36 3.75 -60.30 -0.23 -11.59 16 18 C 0.52 8.28 7.16 -10.99 -0.08 8.20 16 19 O -0.56 -10.18 15.95 5.56 0.09 -10.09 16 20 C -0.11 -1.49 2.66 -91.52 -0.24 -1.74 16 21 C -0.13 -2.02 5.24 -27.81 -0.15 -2.17 16 22 C 0.53 8.01 7.74 -11.32 -0.09 7.92 16 23 O -0.49 -9.29 17.87 5.61 0.10 -9.19 16 24 N -0.68 -8.57 5.09 -11.75 -0.06 -8.63 16 25 C 0.53 6.81 7.74 -11.32 -0.09 6.73 16 26 O -0.51 -7.83 17.87 5.61 0.10 -7.73 16 27 C -0.12 -1.45 4.70 -27.81 -0.13 -1.58 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.06 1.36 6.93 -51.93 -0.36 1.00 16 30 H 0.03 0.50 6.49 -51.93 -0.34 0.16 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 7.21 6.23 -40.82 -0.25 6.96 16 40 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 42 H 0.13 2.38 6.86 -51.93 -0.36 2.02 16 43 H 0.41 4.64 8.79 -40.82 -0.36 4.28 16 44 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.12 1.46 7.98 -51.93 -0.41 1.04 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -28.29 353.55 -7.26 -35.55 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.74 Total: 12.90 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.64 Total: 13.50 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.09 Total: -53.93 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: 0.29 Total: -27.02 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.58 Total: 13.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.29 -7.26 -35.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024705892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.428 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds