Wall clock time and date at job start Fri Apr 10 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47076 * 264.87682 * 3 2 1 5 5 H 1.48495 * 109.47256 * 24.87347 * 3 2 1 6 6 H 1.48498 * 109.47356 * 144.87560 * 3 2 1 7 7 C 1.38815 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99630 * 30.19396 * 7 2 1 9 9 N 1.36934 * 120.00036 * 210.19279 * 7 2 1 10 10 C 1.46931 * 120.63381 * 42.33331 * 9 7 2 11 11 C 1.53186 * 108.77788 * 126.38881 * 10 9 7 12 12 C 1.53042 * 109.31170 * 54.63495 * 11 10 9 13 13 C 1.53042 * 109.54024 * 298.63202 * 12 11 10 14 14 C 1.46933 * 120.62967 * 222.32602 * 9 7 2 15 15 H 1.09004 * 109.69862 * 113.75074 * 14 9 7 16 16 C 1.52992 * 109.58471 * 353.40067 * 14 9 7 17 17 N 1.46501 * 109.47472 * 55.32321 * 16 14 9 18 18 C 1.34777 * 120.00116 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99929 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99898 * 179.97438 * 18 17 16 21 21 C 1.53247 * 109.62273 * 299.07937 * 20 18 17 22 22 C 1.50586 * 109.17184 * 184.67913 * 21 20 18 23 23 O 1.21224 * 119.36104 * 209.07740 * 22 21 20 24 24 N 1.34143 * 121.27673 * 29.07624 * 22 21 20 25 25 C 1.34137 * 122.59301 * 359.45994 * 24 22 21 26 26 O 1.21220 * 119.36416 * 180.54955 * 25 24 22 27 27 C 1.50592 * 121.27570 * 0.55950 * 25 24 22 28 28 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58163 * 6.59784 * 10 9 7 30 30 H 1.08999 * 109.69967 * 246.25170 * 10 9 7 31 31 H 1.09005 * 109.49482 * 294.68459 * 11 10 9 32 32 H 1.08998 * 109.49691 * 174.58808 * 11 10 9 33 33 H 1.09008 * 109.45669 * 178.61140 * 12 11 10 34 34 H 1.08998 * 109.46170 * 58.65583 * 12 11 10 35 35 H 1.09005 * 109.49666 * 301.41553 * 13 12 11 36 36 H 1.09001 * 109.49884 * 181.31660 * 13 12 11 37 37 H 1.08997 * 109.47657 * 295.31881 * 16 14 9 38 38 H 1.09003 * 109.47187 * 175.32060 * 16 14 9 39 39 H 0.97001 * 119.99876 * 0.02562 * 17 16 14 40 40 H 1.08991 * 109.62206 * 59.63498 * 20 18 17 41 41 H 1.09002 * 109.51951 * 304.56702 * 21 20 18 42 42 H 1.09001 * 109.52257 * 64.75785 * 21 20 18 43 43 H 0.96999 * 118.70229 * 179.43401 * 24 22 21 44 44 H 1.09005 * 109.52249 * 210.98327 * 27 25 24 45 45 H 1.09002 * 109.52021 * 90.79576 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6060 1.9839 -1.3945 5 1 1.3978 2.6815 0.5889 6 1 3.4894 1.4739 0.8055 7 6 2.0103 -1.2022 0.0005 8 1 1.5801 -2.0742 -0.4695 9 7 3.2403 -1.2824 0.5970 10 6 3.4871 -0.6370 1.8937 11 6 4.0528 -1.6791 2.8634 12 6 5.2892 -2.3314 2.2406 13 6 4.8946 -3.0423 0.9440 14 6 4.3384 -2.0156 -0.0476 15 1 5.1269 -1.3195 -0.3337 16 6 3.8138 -2.7357 -1.2913 17 7 3.1673 -1.7671 -2.1802 18 6 2.6279 -2.1770 -3.3453 19 8 2.6774 -3.3478 -3.6577 20 6 1.9624 -1.1807 -4.2594 21 6 0.7791 -0.5289 -3.5358 22 6 0.0526 0.3781 -4.4935 23 8 -0.5324 1.3492 -4.0646 24 7 0.0404 0.1321 -5.8122 25 6 0.6742 -0.9168 -6.3575 26 8 0.6328 -1.0777 -7.5582 27 6 1.4361 -1.8984 -5.5068 28 1 -0.4850 0.8401 0.0004 29 1 2.5516 -0.2404 2.2883 30 1 4.2044 0.1743 1.7697 31 1 3.2986 -2.4415 3.0588 32 1 4.3301 -1.1929 3.7987 33 1 5.7082 -3.0560 2.9390 34 1 6.0332 -1.5652 2.0227 35 1 4.1326 -3.7919 1.1575 36 1 5.7711 -3.5263 0.5132 37 1 3.0905 -3.4949 -0.9937 38 1 4.6444 -3.2103 -1.8139 39 1 3.1280 -0.8306 -1.9305 40 1 2.6815 -0.4161 -4.5530 41 1 0.0987 -1.3027 -3.1802 42 1 1.1451 0.0527 -2.6897 43 1 -0.4464 0.7364 -6.3942 44 1 2.2740 -2.3005 -6.0764 45 1 0.7744 -2.7113 -5.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024705892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:54 Heat of formation + Delta-G solvation = -110.919032 kcal Electronic energy + Delta-G solvation = -29327.461813 eV Core-core repulsion = 25344.424409 eV Total energy + Delta-G solvation = -3983.037404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -42.66405 -40.77022 -39.99720 -39.40076 -36.57948 -35.72840 -34.90397 -34.70945 -32.53139 -32.12840 -29.87426 -27.95508 -26.77620 -25.12900 -24.28238 -23.98494 -22.21803 -21.34619 -20.75143 -20.36410 -18.94527 -18.63703 -18.36008 -17.81464 -17.18344 -16.95941 -16.67484 -16.47379 -16.09766 -15.77110 -15.48580 -15.35084 -15.16793 -14.89004 -14.71752 -14.67560 -14.45722 -14.23930 -13.70941 -13.59126 -13.33757 -13.09657 -12.71975 -12.67960 -12.49384 -12.32095 -12.17282 -11.99971 -11.95572 -11.57386 -11.44911 -11.42509 -11.39288 -11.17682 -11.12569 -10.66263 -10.40462 -9.76076 -8.47025 -8.09611 -5.42444 0.34563 1.38995 1.54997 1.56200 1.58848 1.63858 1.74894 2.36610 2.55507 2.88327 3.06294 3.36026 3.45378 3.51815 3.62677 3.92024 4.01975 4.14283 4.19976 4.27338 4.38107 4.43465 4.55275 4.55741 4.65775 4.77603 4.80790 4.86994 4.88207 4.98744 5.00851 5.10636 5.16696 5.25502 5.35356 5.40146 5.42336 5.67824 5.70798 5.73001 6.03320 6.19972 6.43065 6.70538 6.75131 7.09426 7.36450 7.75353 8.27266 9.06008 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.004918 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.880312 B = 5692.090888 C = 7040.868552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.862 3.138 4 H -0.278 1.278 5 H -0.322 1.322 6 H -0.237 1.237 7 C -0.244 4.244 8 H 0.052 0.948 9 N -0.609 5.609 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.122 4.122 14 C 0.154 3.846 15 H 0.049 0.951 16 C 0.139 3.861 17 N -0.688 5.688 18 C 0.519 3.481 19 O -0.578 6.578 20 C -0.102 4.102 21 C -0.126 4.126 22 C 0.541 3.459 23 O -0.530 6.530 24 N -0.665 5.665 25 C 0.543 3.457 26 O -0.528 6.528 27 C -0.113 4.113 28 H 0.257 0.743 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.409 0.591 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.417 0.583 44 H 0.135 0.865 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -2.669 -4.006 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.690 3.310 4 H -0.205 1.205 5 H -0.250 1.250 6 H -0.161 1.161 7 C -0.373 4.373 8 H 0.069 0.931 9 N -0.335 5.335 10 C 0.014 3.986 11 C -0.171 4.171 12 C -0.142 4.142 13 C -0.162 4.162 14 C 0.048 3.952 15 H 0.067 0.933 16 C 0.015 3.985 17 N -0.338 5.338 18 C 0.305 3.695 19 O -0.460 6.460 20 C -0.123 4.123 21 C -0.166 4.166 22 C 0.331 3.669 23 O -0.405 6.405 24 N -0.330 5.330 25 C 0.334 3.666 26 O -0.402 6.402 27 C -0.152 4.152 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.150 0.850 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.258 0.742 44 H 0.153 0.847 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.466 -3.128 -4.461 10.922 hybrid contribution -0.800 1.998 0.195 2.161 sum 8.666 -1.130 -4.266 9.725 Atomic orbital electron populations 1.70070 1.07310 1.26863 1.51083 1.25804 0.94743 0.98800 0.98522 0.87159 0.81263 0.83541 0.79073 1.20483 1.25022 1.16069 1.18416 0.92397 0.93450 1.33054 0.93066 1.44465 1.08640 1.62250 1.18156 1.21358 0.97686 0.93950 0.85652 1.21958 0.97987 0.98880 0.98289 1.21360 0.96668 0.99599 0.96544 1.21878 1.00635 0.97581 0.96056 1.21050 0.89923 0.93131 0.91053 0.93338 1.21269 0.96255 0.91228 0.89751 1.46126 1.56214 1.13199 1.18259 1.20171 0.78621 0.88625 0.82071 1.90658 1.60877 1.18967 1.75466 1.21443 0.97727 0.98588 0.94581 1.21828 0.97595 0.99819 0.97379 1.20884 0.78677 0.84818 0.82511 1.90795 1.43064 1.29394 1.77198 1.44764 1.50045 1.28617 1.09597 1.21021 0.76899 0.80368 0.88334 1.90773 1.60150 1.73156 1.16149 1.21747 1.02534 0.96811 0.94156 0.93344 0.94519 0.95188 0.93519 0.91258 0.90887 0.91770 0.93079 0.89744 0.93736 0.90202 0.75324 0.85038 0.86711 0.87605 0.74223 0.84688 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 13.97 21.65 0.30 -48.84 16 2 C 0.02 1.03 4.02 84.86 0.34 1.38 16 3 Si 0.86 38.05 26.96 68.60 1.85 39.90 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.32 -15.71 7.11 99.48 0.71 -15.01 16 6 H -0.24 -9.62 4.86 99.48 0.48 -9.14 16 7 C -0.24 -10.98 6.36 84.03 0.53 -10.44 16 8 H 0.05 2.62 6.70 -2.91 -0.02 2.60 16 9 N -0.61 -23.18 2.42 -675.23 -1.64 -24.82 16 10 C 0.14 5.04 4.49 86.36 0.39 5.43 16 11 C -0.13 -3.85 6.08 30.67 0.19 -3.66 16 12 C -0.10 -2.48 5.88 30.62 0.18 -2.30 16 13 C -0.12 -3.10 5.37 30.67 0.16 -2.93 16 14 C 0.15 4.68 3.08 44.97 0.14 4.82 16 15 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 16 C 0.14 4.32 4.50 86.38 0.39 4.71 16 17 N -0.69 -22.21 3.75 -463.07 -1.74 -23.95 16 18 C 0.52 16.02 7.16 87.66 0.63 16.65 16 19 O -0.58 -20.37 15.95 -3.03 -0.05 -20.42 16 20 C -0.10 -2.55 2.66 -11.38 -0.03 -2.58 16 21 C -0.13 -3.88 5.24 29.89 0.16 -3.72 16 22 C 0.54 16.36 7.74 87.72 0.68 17.04 16 23 O -0.53 -20.38 17.87 -2.86 -0.05 -20.43 16 24 N -0.67 -16.02 5.09 -428.64 -2.18 -18.21 16 25 C 0.54 12.94 7.74 87.72 0.68 13.62 16 26 O -0.53 -15.12 17.87 -2.85 -0.05 -15.17 16 27 C -0.11 -2.49 4.70 29.89 0.14 -2.35 16 28 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.04 1.53 6.93 -2.39 -0.02 1.51 16 30 H 0.03 1.08 6.49 -2.39 -0.02 1.06 16 31 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.61 7.69 -2.39 -0.02 1.59 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.41 13.93 6.23 -92.71 -0.58 13.36 16 40 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.11 3.92 6.86 -2.39 -0.02 3.90 16 43 H 0.42 8.97 8.79 -92.71 -0.81 8.15 16 44 H 0.14 2.67 8.14 -2.38 -0.02 2.65 16 45 H 0.12 2.78 7.98 -2.39 -0.02 2.76 16 Total: -1.00 -62.23 353.55 0.43 -61.79 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.59 Total: 34.49 kcal Atomic # 6 Polarization: 31.08 SS G_CDS: 4.58 Total: 35.65 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -5.26 Total: -115.82 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.15 Total: -56.02 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.85 Total: 39.90 kcal Total: -62.23 0.43 -61.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024705892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.126 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds