Wall clock time and date at job start Fri Apr 10 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46705 * 300.00034 * 3 2 1 6 6 H 1.48500 * 109.46759 * 59.99523 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99818 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47090 * 204.99992 * 10 9 7 12 12 C 1.53006 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46705 * 60.00016 * 12 11 10 14 14 N 1.46499 * 109.47481 * 60.00448 * 13 12 11 15 15 C 1.34777 * 120.00199 * 154.99940 * 14 13 12 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.08997 * 110.54290 * 54.29398 * 18 17 15 20 20 C 1.54225 * 110.60895 * 177.14696 * 18 17 15 21 21 C 1.51310 * 103.55794 * 118.51267 * 20 18 17 22 22 O 1.21222 * 125.39785 * 180.02562 * 21 20 18 23 23 N 1.33877 * 109.20527 * 0.02562 * 21 20 18 24 24 C 1.34216 * 114.53040 * 0.09355 * 23 21 20 25 25 O 1.21229 * 125.59195 * 179.97438 * 24 23 21 26 26 C 1.52997 * 109.47284 * 299.99925 * 13 12 11 27 27 C 1.52997 * 109.47394 * 60.00394 * 26 13 12 28 28 H 0.97000 * 119.99735 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00291 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47279 * 325.00333 * 10 9 7 31 31 H 1.08996 * 109.47024 * 60.00191 * 11 10 9 32 32 H 1.09007 * 109.47320 * 300.00033 * 11 10 9 33 33 H 1.08993 * 109.46653 * 299.99965 * 12 11 10 34 34 H 1.09000 * 109.46852 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46751 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99484 * 334.99037 * 14 13 12 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 39 39 H 1.08995 * 110.60455 * 237.03508 * 20 18 17 40 40 H 1.09006 * 110.60378 * 359.97438 * 20 18 17 41 41 H 0.97000 * 122.75911 * 179.97438 * 23 21 20 42 42 H 1.09006 * 109.47495 * 180.02562 * 26 13 12 43 43 H 1.09007 * 109.47320 * 300.00586 * 26 13 12 44 44 H 1.08998 * 109.47567 * 179.97438 * 27 26 13 45 45 H 1.08998 * 109.46943 * 59.99679 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1810 -4.7522 -0.6091 12 6 1.9458 -6.0774 -0.6085 13 6 2.3091 -6.4558 0.8287 14 7 1.0848 -6.5983 1.6206 15 6 1.0785 -7.3828 2.7165 16 8 2.0863 -7.9713 3.0468 17 6 -0.1826 -7.5342 3.5275 18 6 0.0778 -8.4768 4.7042 19 1 0.9311 -8.1325 5.2885 20 6 -1.1768 -8.5948 5.5932 21 6 -1.5320 -10.0634 5.5123 22 8 -2.4681 -10.5914 6.0731 23 7 -0.6487 -10.6874 4.7232 24 6 0.3044 -9.8907 4.2148 25 8 1.2012 -10.2441 3.4796 26 6 3.1862 -5.3605 1.4384 27 6 2.4215 -4.0353 1.4378 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9688 -3.5506 -0.5888 31 1 0.9218 -4.4823 -1.6328 32 1 0.2702 -4.8585 -0.0196 33 1 2.8566 -5.9713 -1.1977 34 1 1.3210 -6.8576 -1.0432 35 1 2.8543 -7.3996 0.8291 36 1 0.2788 -6.1278 1.3563 37 1 -0.4914 -6.5592 3.9045 38 1 -0.9714 -7.9472 2.8989 39 1 -0.9471 -8.3117 6.6204 40 1 -1.9865 -7.9816 5.1974 41 1 -0.6924 -11.6380 4.5354 42 1 3.4455 -5.6302 2.4622 43 1 4.0972 -5.2544 0.8491 44 1 3.0462 -3.2550 1.8725 45 1 1.5106 -4.1413 2.0269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026615553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:18 Heat of formation + Delta-G solvation = -106.248703 kcal Electronic energy + Delta-G solvation = -27629.420411 eV Core-core repulsion = 23646.585528 eV Total energy + Delta-G solvation = -3982.834883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16567 -40.06678 -38.89279 -37.91193 -36.20178 -34.67530 -33.87853 -32.74295 -30.84271 -30.44963 -29.11352 -27.49194 -25.45147 -23.68547 -22.31208 -22.17060 -21.74612 -20.89814 -20.38529 -18.85889 -18.27410 -17.54736 -17.09091 -16.87103 -16.47378 -15.81461 -15.47736 -15.28672 -14.99198 -14.55079 -14.41477 -14.20602 -13.95378 -13.68519 -13.55928 -13.31284 -13.23063 -12.89137 -12.48875 -12.36810 -12.14262 -11.87344 -11.74429 -11.60602 -11.05280 -10.99749 -10.90960 -10.81847 -10.64545 -10.40682 -10.28109 -10.18570 -10.12215 -9.75709 -9.71375 -9.59154 -8.94095 -8.80739 -6.97429 -5.79693 -3.07713 1.15906 2.35778 2.40283 2.69016 3.12870 3.40835 3.47218 3.48873 3.67711 3.82062 3.96704 4.23714 4.56184 4.65793 4.83214 4.89252 4.98917 5.08286 5.12837 5.13305 5.20938 5.40238 5.49038 5.57473 5.61378 5.68659 5.74522 5.87392 5.93821 6.01122 6.08435 6.25870 6.26350 6.34973 6.49469 6.52149 6.65528 6.75475 6.94017 6.96674 7.11238 7.52668 7.57290 7.68893 8.29434 8.39509 9.50701 10.08789 10.43133 11.43144 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002531 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.450180 B =11059.893232 C =11825.139242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 C -0.124 4.124 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.718 5.718 15 C 0.504 3.496 16 O -0.520 6.520 17 C -0.131 4.131 18 C -0.109 4.109 19 H 0.134 0.866 20 C -0.156 4.156 21 C 0.531 3.469 22 O -0.490 6.490 23 N -0.687 5.687 24 C 0.525 3.475 25 O -0.442 6.442 26 C -0.128 4.128 27 C -0.130 4.130 28 H 0.254 0.746 29 H 0.382 0.618 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.400 0.600 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.413 0.587 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -19.264 7.982 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.045 3.955 14 N -0.371 5.371 15 C 0.289 3.711 16 O -0.395 6.395 17 C -0.171 4.171 18 C -0.130 4.130 19 H 0.151 0.849 20 C -0.196 4.196 21 C 0.319 3.681 22 O -0.362 6.362 23 N -0.353 5.353 24 C 0.311 3.689 25 O -0.309 6.309 26 C -0.167 4.167 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.236 0.764 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.577 -19.826 8.108 21.478 hybrid contribution -0.328 0.800 -0.147 0.876 sum -1.905 -19.026 7.961 20.713 Atomic orbital electron populations 1.69664 1.05072 1.25471 1.58075 1.24726 0.95510 0.97642 1.03201 0.86152 0.78834 0.84269 0.77170 1.20584 1.21915 1.21927 1.19287 0.91007 0.84151 1.42167 0.91206 1.42429 1.05688 0.99846 1.88616 1.20233 0.94316 0.85814 0.92910 1.21808 0.98579 0.94296 1.01537 1.21796 1.01464 0.97754 0.95093 1.20940 0.85355 0.99005 0.90165 1.46087 1.14804 1.48579 1.27657 1.20326 0.90063 0.79224 0.81474 1.90784 1.34468 1.45391 1.68834 1.21632 0.97886 1.01628 0.95994 1.21824 1.00292 0.93232 0.97695 0.84863 1.22621 0.99156 0.93890 1.03932 1.20770 0.80447 0.90507 0.76357 1.90822 1.27954 1.72979 1.44406 1.44967 1.29161 1.14398 1.46800 1.20789 0.80257 0.88589 0.79302 1.90900 1.29549 1.79289 1.31134 1.21920 0.98369 0.95630 1.00783 1.22197 0.99558 0.94852 1.00488 0.93630 0.78445 0.93599 0.91552 0.92669 0.90471 0.91901 0.89962 0.76438 0.86625 0.88443 0.85675 0.85667 0.74783 0.92303 0.91559 0.92248 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 2 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.16 5.12 -53.42 -0.27 -17.43 16 10 C 0.18 3.23 2.77 -67.93 -0.19 3.04 16 11 C -0.12 -1.78 5.22 -26.73 -0.14 -1.92 16 12 C -0.12 -1.44 5.61 -26.73 -0.15 -1.59 16 13 C 0.15 1.87 2.78 -67.93 -0.19 1.68 16 14 N -0.72 -7.96 4.23 -53.81 -0.23 -8.19 16 15 C 0.50 5.72 7.48 -10.98 -0.08 5.64 16 16 O -0.52 -7.86 13.42 -16.71 -0.22 -8.09 16 17 C -0.13 -0.88 5.02 -27.88 -0.14 -1.02 16 18 C -0.11 -0.71 2.69 -90.83 -0.24 -0.96 16 19 H 0.13 0.90 7.96 -51.93 -0.41 0.49 16 20 C -0.16 -0.66 6.67 -26.94 -0.18 -0.84 16 21 C 0.53 3.84 8.55 -11.09 -0.09 3.75 16 22 O -0.49 -5.24 18.02 5.61 0.10 -5.14 16 23 N -0.69 -4.87 5.49 -11.32 -0.06 -4.93 16 24 C 0.52 4.83 7.74 -10.93 -0.08 4.75 16 25 O -0.44 -6.05 15.65 -16.66 -0.26 -6.31 16 26 C -0.13 -1.79 5.60 -26.73 -0.15 -1.94 16 27 C -0.13 -2.18 5.34 -26.73 -0.14 -2.32 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 30 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.74 6.50 -51.93 -0.34 0.41 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 36 H 0.40 3.88 6.87 -40.82 -0.28 3.60 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.13 0.32 7.74 -51.93 -0.40 -0.09 16 41 H 0.41 2.45 8.96 -40.82 -0.37 2.09 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.89 7.60 -51.93 -0.39 0.49 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -35.55 365.28 -8.45 -44.00 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.68 Total: 9.01 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.03 Total: 1.29 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.16 Total: -57.24 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.38 Total: -19.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.55 -8.45 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026615553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.251 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds