Wall clock time and date at job start Fri Apr 10 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46705 * 300.00034 * 3 2 1 6 6 H 1.48500 * 109.46759 * 59.99523 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99873 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99818 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47090 * 204.99992 * 10 9 7 12 12 C 1.53006 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46705 * 60.00016 * 12 11 10 14 14 N 1.46499 * 109.47481 * 60.00448 * 13 12 11 15 15 C 1.34777 * 120.00199 * 154.99940 * 14 13 12 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.08997 * 110.54290 * 54.29398 * 18 17 15 20 20 C 1.54225 * 110.60895 * 177.14696 * 18 17 15 21 21 C 1.51310 * 103.55794 * 118.51267 * 20 18 17 22 22 O 1.21222 * 125.39785 * 180.02562 * 21 20 18 23 23 N 1.33877 * 109.20527 * 0.02562 * 21 20 18 24 24 C 1.34216 * 114.53040 * 0.09355 * 23 21 20 25 25 O 1.21229 * 125.59195 * 179.97438 * 24 23 21 26 26 C 1.52997 * 109.47284 * 299.99925 * 13 12 11 27 27 C 1.52997 * 109.47394 * 60.00394 * 26 13 12 28 28 H 0.97000 * 119.99735 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00291 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47279 * 325.00333 * 10 9 7 31 31 H 1.08996 * 109.47024 * 60.00191 * 11 10 9 32 32 H 1.09007 * 109.47320 * 300.00033 * 11 10 9 33 33 H 1.08993 * 109.46653 * 299.99965 * 12 11 10 34 34 H 1.09000 * 109.46852 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.46751 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99484 * 334.99037 * 14 13 12 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 39 39 H 1.08995 * 110.60455 * 237.03508 * 20 18 17 40 40 H 1.09006 * 110.60378 * 359.97438 * 20 18 17 41 41 H 0.97000 * 122.75911 * 179.97438 * 23 21 20 42 42 H 1.09006 * 109.47495 * 180.02562 * 26 13 12 43 43 H 1.09007 * 109.47320 * 300.00586 * 26 13 12 44 44 H 1.08998 * 109.47567 * 179.97438 * 27 26 13 45 45 H 1.08998 * 109.46943 * 59.99679 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1810 -4.7522 -0.6091 12 6 1.9458 -6.0774 -0.6085 13 6 2.3091 -6.4558 0.8287 14 7 1.0848 -6.5983 1.6206 15 6 1.0785 -7.3828 2.7165 16 8 2.0863 -7.9713 3.0468 17 6 -0.1826 -7.5342 3.5275 18 6 0.0778 -8.4768 4.7042 19 1 0.9311 -8.1325 5.2885 20 6 -1.1768 -8.5948 5.5932 21 6 -1.5320 -10.0634 5.5123 22 8 -2.4681 -10.5914 6.0731 23 7 -0.6487 -10.6874 4.7232 24 6 0.3044 -9.8907 4.2148 25 8 1.2012 -10.2441 3.4796 26 6 3.1862 -5.3605 1.4384 27 6 2.4215 -4.0353 1.4378 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9688 -3.5506 -0.5888 31 1 0.9218 -4.4823 -1.6328 32 1 0.2702 -4.8585 -0.0196 33 1 2.8566 -5.9713 -1.1977 34 1 1.3210 -6.8576 -1.0432 35 1 2.8543 -7.3996 0.8291 36 1 0.2788 -6.1278 1.3563 37 1 -0.4914 -6.5592 3.9045 38 1 -0.9714 -7.9472 2.8989 39 1 -0.9471 -8.3117 6.6204 40 1 -1.9865 -7.9816 5.1974 41 1 -0.6924 -11.6380 4.5354 42 1 3.4455 -5.6302 2.4622 43 1 4.0972 -5.2544 0.8491 44 1 3.0462 -3.2550 1.8725 45 1 1.5106 -4.1413 2.0269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026615553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:17 Heat of formation + Delta-G solvation = -132.420464 kcal Electronic energy + Delta-G solvation = -27630.555304 eV Core-core repulsion = 23646.585528 eV Total energy + Delta-G solvation = -3983.969776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.79494 -41.03587 -39.69408 -39.02278 -36.93642 -36.21845 -34.49488 -34.18597 -32.39862 -31.65056 -29.95742 -28.76188 -26.17431 -25.50698 -23.46147 -22.90486 -22.52031 -22.16126 -21.10456 -20.08521 -19.03944 -18.94624 -18.25190 -17.57629 -17.17505 -16.92699 -16.58178 -16.43937 -15.95179 -15.74354 -15.35642 -15.18585 -15.10155 -14.98594 -14.64482 -14.51922 -13.88437 -13.85364 -13.64548 -13.51025 -13.04918 -13.04081 -12.92927 -12.81268 -12.73751 -12.17944 -12.08882 -11.97920 -11.96839 -11.67919 -11.64862 -11.36560 -11.26866 -11.05297 -10.99245 -10.79461 -10.64825 -9.84285 -8.93700 -7.91214 -5.17442 0.51086 1.48174 1.49248 1.58201 1.74921 1.81952 1.86514 2.34503 2.58524 3.18460 3.25665 3.42320 3.44899 3.73881 3.79362 3.89971 3.95523 4.08520 4.32431 4.37483 4.42651 4.44040 4.57103 4.65141 4.70214 4.71742 4.74523 4.85666 4.89394 4.94836 5.06679 5.07635 5.17318 5.21313 5.30246 5.36900 5.53302 5.61595 5.66037 5.69925 5.73442 6.32702 6.32836 6.72776 6.89797 7.39006 7.46126 8.17112 8.39815 9.32215 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002531 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.450180 B =11059.893232 C =11825.139242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.172 3.828 11 C -0.113 4.113 12 C -0.111 4.111 13 C 0.154 3.846 14 N -0.716 5.716 15 C 0.496 3.504 16 O -0.561 6.561 17 C -0.126 4.126 18 C -0.104 4.104 19 H 0.133 0.867 20 C -0.139 4.139 21 C 0.534 3.466 22 O -0.525 6.525 23 N -0.682 5.682 24 C 0.525 3.475 25 O -0.493 6.493 26 C -0.118 4.118 27 C -0.116 4.116 28 H 0.250 0.750 29 H 0.374 0.626 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.415 0.585 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -19.491 8.436 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.064 3.936 11 C -0.152 4.152 12 C -0.149 4.149 13 C 0.049 3.951 14 N -0.369 5.369 15 C 0.283 3.717 16 O -0.439 6.439 17 C -0.166 4.166 18 C -0.125 4.125 19 H 0.150 0.850 20 C -0.178 4.178 21 C 0.325 3.675 22 O -0.400 6.400 23 N -0.347 5.347 24 C 0.313 3.687 25 O -0.364 6.364 26 C -0.157 4.157 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.206 0.794 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.254 0.746 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.258 -20.079 8.568 21.947 hybrid contribution -0.061 0.779 -0.282 0.831 sum -2.320 -19.300 8.285 21.131 Atomic orbital electron populations 1.69791 1.06279 1.25725 1.60009 1.25427 0.96332 1.00609 1.04315 0.85210 0.78221 0.80600 0.76594 1.19492 1.22212 1.22205 1.19590 0.91185 0.85486 1.40168 0.91290 1.42609 1.05451 1.00869 1.88572 1.20460 0.94213 0.85065 0.93872 1.21675 0.98570 0.94038 1.00873 1.21718 1.01768 0.96649 0.94776 1.20779 0.85829 0.97796 0.90648 1.46077 1.14540 1.48663 1.27648 1.21151 0.91092 0.78087 0.81323 1.90777 1.36459 1.46859 1.69814 1.21740 0.95840 1.03395 0.95639 1.21844 1.01487 0.91223 0.97980 0.84965 1.22695 0.98523 0.91657 1.04922 1.21257 0.79425 0.91693 0.75164 1.90817 1.29424 1.73948 1.45793 1.44987 1.28731 1.14660 1.46331 1.21267 0.79382 0.89853 0.78169 1.90879 1.31607 1.80301 1.33584 1.21812 0.98591 0.94601 1.00689 1.21963 0.99373 0.95363 0.98949 0.94155 0.79413 0.94766 0.92219 0.91410 0.89959 0.89649 0.90630 0.75413 0.83521 0.86255 0.83253 0.82850 0.74574 0.93042 0.91171 0.95104 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.11 13.06 21.65 0.28 -56.82 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.96 45.33 29.55 68.60 2.03 47.36 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.23 -12.46 9.93 84.03 0.83 -11.63 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.74 -34.69 5.12 -322.93 -1.65 -36.34 16 10 C 0.17 6.15 2.77 44.99 0.12 6.28 16 11 C -0.11 -3.05 5.22 30.60 0.16 -2.89 16 12 C -0.11 -2.34 5.61 30.60 0.17 -2.17 16 13 C 0.15 3.59 2.78 44.99 0.13 3.71 16 14 N -0.72 -14.29 4.23 -442.54 -1.87 -16.16 16 15 C 0.50 10.33 7.48 87.66 0.66 10.98 16 16 O -0.56 -16.63 13.42 18.25 0.24 -16.38 16 17 C -0.13 -1.28 5.02 29.85 0.15 -1.13 16 18 C -0.10 -1.09 2.69 -10.93 -0.03 -1.12 16 19 H 0.13 1.51 7.96 -2.39 -0.02 1.49 16 20 C -0.14 -0.66 6.67 30.46 0.20 -0.46 16 21 C 0.53 6.64 8.55 87.99 0.75 7.40 16 22 O -0.53 -10.50 18.02 -2.85 -0.05 -10.55 16 23 N -0.68 -8.95 5.49 -427.37 -2.34 -11.29 16 24 C 0.53 9.15 7.74 87.94 0.68 9.84 16 25 O -0.49 -13.61 15.65 18.41 0.29 -13.32 16 26 C -0.12 -3.19 5.60 30.59 0.17 -3.02 16 27 C -0.12 -3.81 5.34 30.59 0.16 -3.64 16 28 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.37 18.71 7.80 -92.71 -0.72 17.99 16 30 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.66 6.50 -2.38 -0.02 1.65 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 36 H 0.41 6.72 6.87 -92.71 -0.64 6.08 16 37 H 0.15 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.15 -0.01 7.74 -2.38 -0.02 -0.03 16 41 H 0.41 4.82 8.96 -92.71 -0.83 3.99 16 42 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.78 7.60 -2.39 -0.02 1.76 16 Total: -1.00 -79.13 365.28 0.40 -78.72 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.15 Total: 26.34 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 4.63 Total: 8.45 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.59 Total: -120.62 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: 0.48 Total: -40.26 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -79.13 0.40 -78.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026615553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.699 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds