Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35729 * 116.99519 * 2 1 4 4 C 1.39351 * 120.36308 * 359.97438 * 3 2 1 5 5 N 1.31293 * 120.88271 * 179.74665 * 4 3 2 6 6 C 1.32887 * 121.71667 * 0.25348 * 5 4 3 7 7 C 1.47763 * 119.68990 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00324 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99504 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99587 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47144 * 185.94261 * 10 9 7 12 12 H 1.09005 * 109.86990 * 300.87561 * 11 10 9 13 13 C 1.54318 * 109.88544 * 179.86548 * 11 10 9 14 14 C 1.55158 * 102.94202 * 218.39127 * 13 11 10 15 15 C 1.54907 * 101.58186 * 35.49605 * 14 13 11 16 16 N 1.47021 * 109.88155 * 62.05153 * 11 10 9 17 17 C 1.36932 * 125.65235 * 298.34033 * 16 11 10 18 18 H 1.08007 * 119.99739 * 335.96995 * 17 16 11 19 19 C 1.38805 * 120.00392 * 155.97033 * 17 16 11 20 20 N 1.31622 * 120.00350 * 159.47075 * 19 17 16 21 21 Si 1.86807 * 119.99831 * 339.46752 * 19 17 16 22 22 H 1.48499 * 109.47083 * 84.66597 * 21 19 17 23 23 H 1.48495 * 109.47121 * 204.66602 * 21 19 17 24 24 H 1.48497 * 109.46963 * 324.66890 * 21 19 17 25 25 C 1.39722 * 120.62771 * 0.02562 * 6 5 4 26 26 F 1.35096 * 120.46697 * 179.97438 * 25 6 5 27 27 C 1.38691 * 119.06495 * 359.97438 * 25 6 5 28 28 H 1.09001 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47447 * 300.00018 * 1 2 3 30 30 H 1.08996 * 109.46956 * 60.00524 * 1 2 3 31 31 H 1.08002 * 119.55922 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00439 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.47235 * 305.94215 * 10 9 7 34 34 H 1.09003 * 109.47271 * 65.94427 * 10 9 7 35 35 H 1.09007 * 110.72149 * 336.74773 * 13 11 10 36 36 H 1.09000 * 110.72411 * 100.02098 * 13 11 10 37 37 H 1.08996 * 111.00599 * 153.57896 * 14 13 11 38 38 H 1.09004 * 110.99747 * 277.42547 * 14 13 11 39 39 H 1.09002 * 110.36397 * 81.83708 * 15 14 13 40 40 H 1.09001 * 110.36425 * 204.04074 * 15 14 13 41 41 H 0.97003 * 119.99642 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.78399 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8788 3.5581 0.0044 6 6 3.2021 3.6795 0.0052 7 6 3.8136 5.0246 0.0103 8 8 5.0236 5.1423 0.0114 9 7 3.0299 6.1210 0.0147 10 6 3.6362 7.4546 0.0203 11 6 2.5411 8.5121 0.1739 12 1 1.8291 8.4301 -0.6474 13 6 3.1700 9.9213 0.1844 14 6 2.3216 10.6725 1.2443 15 6 2.0408 9.5479 2.2719 16 7 1.8497 8.3330 1.4590 17 6 1.1448 7.2219 1.8380 18 1 0.7290 6.5646 1.0885 19 6 0.9644 6.9404 3.1851 20 7 -0.0132 6.1458 3.5664 21 14 2.1094 7.6892 4.4572 22 1 1.6298 9.0481 4.8158 23 1 2.1273 6.8342 5.6712 24 1 3.4810 7.7806 3.8957 25 6 4.0208 2.5472 0.0000 26 9 5.3657 2.6744 0.0003 27 6 3.4332 1.2909 -0.0053 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.2150 2.3247 -0.0005 32 1 2.0645 6.0272 0.0142 33 1 4.3355 7.5323 0.8528 34 1 4.1681 7.6160 -0.9173 35 1 4.2154 9.8749 0.4897 36 1 3.0731 10.3942 -0.7929 37 1 2.8918 11.4831 1.6981 38 1 1.3941 11.0451 0.8096 39 1 2.8913 9.4258 2.9426 40 1 1.1386 9.7711 2.8414 41 1 -0.1389 5.9488 4.5078 42 1 4.0395 0.3971 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027922373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = -70.153180 kcal Electronic energy + Delta-G solvation = -27983.233242 eV Core-core repulsion = 23878.503273 eV Total energy + Delta-G solvation = -4104.729969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.17959 -41.92753 -40.69268 -39.54631 -38.87172 -35.55926 -34.60476 -33.53257 -32.00611 -31.77057 -30.64006 -28.51775 -26.80069 -26.04789 -25.20419 -24.05926 -22.65463 -21.61726 -21.18650 -19.70631 -19.38436 -18.98110 -18.40747 -17.48105 -17.37787 -17.24970 -16.95959 -16.80608 -16.60857 -16.10429 -15.91274 -15.59191 -15.19522 -14.93640 -14.74165 -14.52922 -14.36104 -14.16476 -13.98562 -13.87450 -13.40756 -13.01957 -12.92921 -12.79020 -12.73341 -12.50918 -12.34628 -12.08173 -11.75753 -11.60811 -11.37350 -11.29906 -10.76524 -10.75413 -10.73747 -10.05758 -9.64668 -8.97535 -8.13948 -5.40433 -0.63620 -0.17981 1.24285 1.35015 1.41342 1.57601 1.81585 2.16038 2.41358 2.55779 2.89609 3.04740 3.14928 3.30587 3.33191 3.58885 3.74274 3.86552 3.99099 4.03422 4.16061 4.30548 4.40636 4.41738 4.42389 4.45719 4.64043 4.68049 4.74771 4.79353 4.80779 5.02882 5.03817 5.13501 5.16282 5.28796 5.48655 5.51887 5.76760 5.94229 6.15671 6.36610 6.65581 6.80641 7.16351 7.58977 8.17405 9.04861 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.004402 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.849137 B = 6359.400671 C = 7344.684950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.302 6.302 3 C 0.146 3.854 4 C 0.015 3.985 5 N -0.402 5.402 6 C -0.018 4.018 7 C 0.558 3.442 8 O -0.577 6.577 9 N -0.682 5.682 10 C 0.113 3.887 11 C 0.141 3.859 12 H 0.062 0.938 13 C -0.113 4.113 14 C -0.116 4.116 15 C 0.100 3.900 16 N -0.619 5.619 17 C -0.206 4.206 18 H 0.077 0.923 19 C -0.023 4.023 20 N -0.943 5.943 21 Si 0.924 3.076 22 H -0.271 1.271 23 H -0.318 1.318 24 H -0.288 1.288 25 C 0.138 3.862 26 F -0.113 7.113 27 C -0.155 4.155 28 H 0.135 0.865 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.199 0.801 32 H 0.416 0.584 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.009 0.991 40 H 0.039 0.961 41 H 0.257 0.743 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -6.704 -10.885 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.213 6.213 3 C 0.096 3.904 4 C -0.149 4.149 5 N -0.114 5.114 6 C -0.156 4.156 7 C 0.343 3.657 8 O -0.458 6.458 9 N -0.333 5.333 10 C -0.012 4.012 11 C 0.034 3.966 12 H 0.080 0.920 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.024 4.024 16 N -0.345 5.345 17 C -0.335 4.335 18 H 0.095 0.905 19 C -0.218 4.218 20 N -0.590 5.590 21 Si 0.756 3.244 22 H -0.197 1.197 23 H -0.247 1.247 24 H -0.214 1.214 25 C 0.114 3.886 26 F -0.091 7.091 27 C -0.181 4.181 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.216 0.784 32 H 0.256 0.744 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.382 -6.129 -10.740 12.443 hybrid contribution 0.620 -0.685 1.471 1.737 sum 2.002 -6.814 -9.269 11.677 Atomic orbital electron populations 1.23665 0.74767 1.06993 1.03319 1.86065 1.24624 1.24010 1.86563 1.19978 0.91857 0.86565 0.92010 1.23600 1.02546 0.85842 1.02880 1.67508 1.08821 1.28618 1.06404 1.21102 0.90292 0.93623 1.10546 1.17944 0.86063 0.84512 0.77139 1.90742 1.14438 1.87208 1.53426 1.45976 1.11563 1.05242 1.70503 1.22053 0.96730 0.81866 1.00591 1.21592 0.91823 0.94222 0.88924 0.92048 1.22564 0.99161 0.92321 1.01075 1.22680 1.00873 0.96159 0.95702 1.22044 0.97453 0.87896 0.95044 1.45111 1.59686 1.13798 1.15904 1.18463 1.22921 1.00861 0.91253 0.90541 1.25489 0.99185 0.98764 0.98399 1.69894 1.31204 1.42142 1.15762 0.86265 0.81143 0.77646 0.79390 1.19707 1.24688 1.21440 1.18398 0.78068 0.93587 0.98503 1.91580 1.28197 1.96603 1.92740 1.20973 0.93460 0.97094 1.06564 0.84740 0.91396 0.90262 0.78430 0.74395 0.94353 0.90111 0.90727 0.87320 0.88804 0.89915 0.97388 0.94262 0.93415 0.79284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.30 -5.53 10.50 -90.52 -0.95 -6.48 16 3 C 0.15 3.45 6.72 22.73 0.15 3.61 16 4 C 0.02 0.41 10.21 85.04 0.87 1.28 16 5 N -0.40 -14.51 9.52 -184.39 -1.76 -16.27 16 6 C -0.02 -0.70 6.75 41.86 0.28 -0.41 16 7 C 0.56 24.47 7.80 86.76 0.68 25.14 16 8 O -0.58 -27.58 15.29 -3.92 -0.06 -27.64 16 9 N -0.68 -28.77 4.80 -466.05 -2.24 -31.01 16 10 C 0.11 4.31 5.18 86.38 0.45 4.76 16 11 C 0.14 5.01 3.34 45.34 0.15 5.16 16 12 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 13 C -0.11 -3.01 6.48 31.78 0.21 -2.81 16 14 C -0.12 -3.30 7.08 31.99 0.23 -3.07 16 15 C 0.10 4.12 4.73 86.85 0.41 4.53 16 16 N -0.62 -28.03 2.87 -668.27 -1.92 -29.94 16 17 C -0.21 -11.05 8.87 84.03 0.75 -10.30 16 18 H 0.08 4.32 6.55 -2.91 -0.02 4.30 16 19 C -0.02 -1.34 5.45 84.86 0.46 -0.88 16 20 N -0.94 -57.58 13.97 21.65 0.30 -57.28 16 21 Si 0.92 48.51 24.33 68.60 1.67 50.18 16 22 H -0.27 -13.34 6.68 99.48 0.66 -12.68 16 23 H -0.32 -17.18 7.11 99.48 0.71 -16.48 16 24 H -0.29 -15.42 6.75 99.48 0.67 -14.75 16 25 C 0.14 4.63 7.31 22.74 0.17 4.80 16 26 F -0.11 -4.10 15.54 44.97 0.70 -3.41 16 27 C -0.15 -3.91 10.10 22.57 0.23 -3.68 16 28 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 30 H 0.08 0.67 7.67 -2.39 -0.02 0.65 16 31 H 0.20 4.11 6.31 -2.91 -0.02 4.09 16 32 H 0.42 18.07 5.27 -92.71 -0.49 17.59 16 33 H 0.04 1.66 8.12 -2.39 -0.02 1.64 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.07 1.93 7.85 -2.38 -0.02 1.92 16 36 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.01 0.37 5.45 -2.39 -0.01 0.36 16 40 H 0.04 1.74 7.17 -2.39 -0.02 1.72 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -75.98 344.47 2.39 -73.59 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.50 Total: 18.96 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 6.14 Total: 29.30 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -5.60 Total: -134.50 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.01 Total: -34.12 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.70 Total: -3.41 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.67 Total: 50.18 kcal Total: -75.98 2.39 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027922373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.438 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds