Wall clock time and date at job start Fri Apr 10 2020 18:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48503 * 109.46892 * 240.00025 * 3 2 1 5 5 H 1.48497 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47158 * 120.00245 * 3 2 1 7 7 C 1.38820 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99978 * 160.41964 * 7 2 1 9 9 N 1.36933 * 119.99867 * 340.42042 * 7 2 1 10 10 C 1.50175 * 120.53985 * 336.69023 * 9 7 2 11 11 C 1.46235 * 107.53355 * 109.56904 * 10 9 7 12 12 C 1.52525 * 114.27829 * 58.40742 * 11 10 9 13 13 C 1.50135 * 105.42020 * 270.59733 * 12 11 10 14 14 C 1.54836 * 110.78009 * 97.70031 * 13 12 11 15 15 H 1.09001 * 109.35488 * 81.31829 * 14 13 12 16 16 N 1.46496 * 109.36023 * 200.90840 * 14 13 12 17 17 C 1.34777 * 120.00023 * 205.00276 * 16 14 13 18 18 O 1.21288 * 119.99801 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00270 * 179.97438 * 17 16 14 20 20 C 1.52996 * 109.47405 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.53954 * 303.60264 * 20 19 17 22 22 C 1.54230 * 110.60793 * 180.58896 * 20 19 17 23 23 C 1.51315 * 103.55487 * 241.47900 * 22 20 19 24 24 O 1.21218 * 125.39383 * 179.97438 * 23 22 20 25 25 N 1.33878 * 109.20494 * 359.97438 * 23 22 20 26 26 C 1.33875 * 114.47647 * 0.02562 * 25 23 22 27 27 O 1.21226 * 125.39113 * 179.97438 * 26 25 23 28 28 C 1.43430 * 120.53872 * 156.67276 * 9 7 2 29 29 H 0.96992 * 119.99546 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.84176 * 350.06371 * 10 9 7 31 31 H 1.08997 * 109.84338 * 229.07949 * 10 9 7 32 32 H 1.09004 * 108.51973 * 297.16599 * 11 10 9 33 33 H 1.08998 * 108.40557 * 179.56560 * 11 10 9 34 34 H 1.08999 * 110.25296 * 151.62484 * 12 11 10 35 35 H 1.08998 * 110.37010 * 29.63181 * 12 11 10 36 36 H 1.08995 * 109.20763 * 218.02761 * 13 12 11 37 37 H 1.09010 * 109.20212 * 337.38386 * 13 12 11 38 38 H 0.97001 * 120.00037 * 24.99909 * 16 14 13 39 39 H 1.09006 * 109.46478 * 299.99852 * 19 17 16 40 40 H 1.08997 * 109.46763 * 59.99620 * 19 17 16 41 41 H 1.08997 * 110.60069 * 359.97438 * 22 20 19 42 42 H 1.09002 * 110.60599 * 122.96321 * 22 20 19 43 43 H 0.97000 * 122.75601 * 179.97438 * 25 23 22 44 44 H 1.09003 * 108.16241 * 33.29988 * 28 9 7 45 45 H 1.09000 * 108.16624 * 150.08252 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0435 -1.2294 -0.3129 9 7 1.3850 -2.3536 0.3985 10 6 0.1861 -2.2981 1.3011 11 6 -0.9807 -2.6831 0.5081 12 6 -0.8832 -4.0704 -0.1182 13 6 -0.2326 -3.8602 -1.4548 14 6 1.2857 -4.1539 -1.3790 15 1 1.4496 -5.2292 -1.4493 16 7 1.9654 -3.4879 -2.4928 17 6 3.1414 -3.9650 -2.9468 18 8 3.6371 -4.9454 -2.4328 19 6 3.8403 -3.2802 -4.0930 20 6 5.1435 -4.0169 -4.4089 21 1 5.7764 -4.0716 -3.5231 22 6 5.8885 -3.3281 -5.5705 23 6 5.9434 -4.3971 -6.6401 24 8 6.4508 -4.2707 -7.7336 25 7 5.3427 -5.5045 -6.1871 26 6 4.8561 -5.4027 -4.9440 27 8 4.2769 -6.2815 -4.3426 28 6 1.8642 -3.6323 -0.0404 29 1 -0.4849 0.8400 0.0004 30 1 0.0566 -1.2851 1.6823 31 1 0.3152 -2.9929 2.1310 32 1 -1.1141 -1.9518 -0.2891 33 1 -1.8593 -2.6551 1.1526 34 1 -1.8779 -4.4975 -0.2458 35 1 -0.2694 -4.7241 0.5014 36 1 -0.6908 -4.5266 -2.1854 37 1 -0.3828 -2.8269 -1.7681 38 1 1.5691 -2.7036 -2.9036 39 1 3.1947 -3.2918 -4.9712 40 1 4.0626 -2.2490 -3.8190 41 1 5.3304 -2.4610 -5.9235 42 1 6.8941 -3.0401 -5.2641 43 1 5.2657 -6.3137 -6.7164 44 1 2.9482 -3.5735 -0.1385 45 1 1.6345 -4.3651 0.7332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034560322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:30 Heat of formation + Delta-G solvation = -77.076881 kcal Electronic energy + Delta-G solvation = -28689.331335 eV Core-core repulsion = 24707.761437 eV Total energy + Delta-G solvation = -3981.569898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98058 -39.41827 -38.61098 -37.59369 -35.99153 -34.20126 -33.59773 -33.08622 -31.02995 -30.16311 -28.55701 -26.14400 -25.27955 -23.91328 -22.95355 -21.95666 -21.17546 -20.11779 -19.40504 -19.09525 -18.05348 -17.08973 -16.69014 -16.46831 -16.24070 -15.53459 -15.37477 -14.95658 -14.65038 -14.52215 -14.17529 -13.96616 -13.71426 -13.60333 -13.31396 -12.99247 -12.73632 -12.36992 -12.15067 -12.04847 -11.76603 -11.54784 -11.46026 -11.29300 -10.83773 -10.79057 -10.73355 -10.53129 -10.45568 -10.11913 -10.03931 -9.95502 -9.71214 -9.45007 -9.25917 -9.22162 -8.58746 -8.27106 -6.70604 -5.82890 -3.21032 1.35323 2.56859 2.60265 3.15576 3.31799 3.40244 3.42643 3.59846 3.89909 4.07359 4.23894 4.46023 4.51241 4.97297 5.13222 5.20562 5.30423 5.38271 5.41294 5.50729 5.55329 5.65192 5.68233 5.79980 5.96986 6.16364 6.25216 6.29602 6.45723 6.47216 6.54745 6.63830 6.87795 6.93125 6.98909 7.04429 7.12983 7.26771 7.28663 7.60332 7.70527 7.73923 7.96962 8.13678 8.39753 8.80992 9.16102 9.84000 10.38155 11.23770 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003787 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.036900 B = 7392.181598 C = 8762.619332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.164 3.836 11 C -0.129 4.129 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.119 3.881 15 H 0.071 0.929 16 N -0.703 5.703 17 C 0.501 3.499 18 O -0.529 6.529 19 C -0.130 4.130 20 C -0.106 4.106 21 H 0.133 0.867 22 C -0.157 4.157 23 C 0.532 3.468 24 O -0.494 6.494 25 N -0.686 5.686 26 C 0.523 3.477 27 O -0.438 6.438 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.089 0.911 31 H 0.005 0.995 32 H 0.100 0.900 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.399 0.601 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.412 0.588 44 H 0.037 0.963 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -5.681 -9.153 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.011 3.989 15 H 0.089 0.911 16 N -0.352 5.352 17 C 0.285 3.715 18 O -0.406 6.406 19 C -0.170 4.170 20 C -0.128 4.128 21 H 0.150 0.850 22 C -0.196 4.196 23 C 0.320 3.680 24 O -0.366 6.366 25 N -0.353 5.353 26 C 0.308 3.692 27 O -0.304 6.304 28 C 0.022 3.978 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.023 0.977 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.421 -6.497 -8.868 12.257 hybrid contribution 0.102 0.949 -0.624 1.141 sum 5.523 -5.548 -9.492 12.304 Atomic orbital electron populations 1.69954 1.04984 1.25212 1.54381 1.24855 0.95168 0.97934 1.01634 0.86471 0.78963 0.83886 0.77991 1.21229 1.21851 1.21333 1.19092 0.93328 0.85279 1.39204 0.91906 1.44223 1.33540 1.00810 1.51859 1.20176 0.85438 1.00364 0.89960 1.20998 0.98048 0.95547 1.02212 1.20972 0.98561 0.98847 0.96652 1.21660 0.93637 1.02187 0.97274 1.22753 0.91704 0.95797 0.88597 0.91139 1.45939 1.21998 1.31873 1.35434 1.20189 0.81944 0.84722 0.84623 1.90762 1.65003 1.25828 1.58987 1.21614 0.94796 1.01484 0.99128 1.21808 0.98918 0.91881 1.00214 0.84959 1.22623 1.04952 0.98686 0.93372 1.20798 0.75343 0.84132 0.87756 1.90803 1.42564 1.81576 1.21672 1.44911 1.54353 1.17480 1.18514 1.20749 0.77340 0.90880 0.80187 1.90907 1.35402 1.44091 1.60046 1.20768 0.96835 0.88293 0.91877 0.93767 0.89332 0.97736 0.88141 0.95767 0.93366 0.92462 0.94440 0.90237 0.76710 0.88933 0.86805 0.85776 0.85808 0.74909 0.94432 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.98 9.42 55.49 0.52 -22.45 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 20.11 29.60 -169.99 -5.03 15.08 16 4 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -5.89 9.63 -15.06 -0.14 -6.04 16 8 H 0.06 1.57 7.89 -52.49 -0.41 1.16 16 9 N -0.58 -13.30 2.60 -175.10 -0.46 -13.76 16 10 C 0.16 3.64 5.25 -5.20 -0.03 3.61 16 11 C -0.13 -2.61 5.02 -30.19 -0.15 -2.76 16 12 C -0.11 -1.97 5.75 -28.40 -0.16 -2.13 16 13 C -0.11 -1.92 5.23 -27.19 -0.14 -2.06 16 14 C 0.12 2.17 2.91 -65.98 -0.19 1.98 16 15 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 16 N -0.70 -11.62 5.09 -51.92 -0.26 -11.88 16 17 C 0.50 7.90 7.33 -10.98 -0.08 7.82 16 18 O -0.53 -10.17 13.23 -17.45 -0.23 -10.40 16 19 C -0.13 -1.36 5.04 -27.88 -0.14 -1.50 16 20 C -0.11 -1.01 2.72 -90.83 -0.25 -1.25 16 21 H 0.13 1.29 8.03 -51.93 -0.42 0.88 16 22 C -0.16 -1.03 6.67 -26.94 -0.18 -1.21 16 23 C 0.53 4.90 8.55 -11.08 -0.09 4.81 16 24 O -0.49 -6.11 18.02 5.61 0.10 -6.00 16 25 N -0.69 -6.30 5.48 -11.40 -0.06 -6.37 16 26 C 0.52 6.15 7.71 -11.09 -0.09 6.07 16 27 O -0.44 -7.18 15.42 -17.40 -0.27 -7.45 16 28 C 0.15 3.14 4.79 -4.68 -0.02 3.12 16 29 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.09 2.20 6.05 -51.93 -0.31 1.89 16 31 H 0.00 0.10 8.12 -51.93 -0.42 -0.33 16 32 H 0.10 2.31 5.29 -51.93 -0.27 2.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.00 6.29 -51.93 -0.33 0.68 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.57 6.59 -51.92 -0.34 1.23 16 38 H 0.40 6.27 8.44 -40.82 -0.34 5.92 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.12 0.62 7.74 -51.93 -0.40 0.22 16 42 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.41 3.22 8.96 -40.82 -0.37 2.85 16 44 H 0.04 0.83 7.83 -51.93 -0.41 0.43 16 45 H 0.03 0.69 6.88 -51.93 -0.36 0.33 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -31.33 354.52 -8.55 -39.88 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.45 Total: 7.61 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.76 Total: 10.40 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.26 Total: -54.46 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.40 Total: -23.85 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.33 -8.55 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034560322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.197 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds