Wall clock time and date at job start Fri Apr 10 2020 18:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48503 * 109.46892 * 240.00025 * 3 2 1 5 5 H 1.48497 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47158 * 120.00245 * 3 2 1 7 7 C 1.38820 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99978 * 160.41964 * 7 2 1 9 9 N 1.36933 * 119.99867 * 340.42042 * 7 2 1 10 10 C 1.50175 * 120.53985 * 336.69023 * 9 7 2 11 11 C 1.46235 * 107.53355 * 109.56904 * 10 9 7 12 12 C 1.52525 * 114.27829 * 58.40742 * 11 10 9 13 13 C 1.50135 * 105.42020 * 270.59733 * 12 11 10 14 14 C 1.54836 * 110.78009 * 97.70031 * 13 12 11 15 15 H 1.09001 * 109.35488 * 81.31829 * 14 13 12 16 16 N 1.46496 * 109.36023 * 200.90840 * 14 13 12 17 17 C 1.34777 * 120.00023 * 205.00276 * 16 14 13 18 18 O 1.21288 * 119.99801 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00270 * 179.97438 * 17 16 14 20 20 C 1.52996 * 109.47405 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.53954 * 303.60264 * 20 19 17 22 22 C 1.54230 * 110.60793 * 180.58896 * 20 19 17 23 23 C 1.51315 * 103.55487 * 241.47900 * 22 20 19 24 24 O 1.21218 * 125.39383 * 179.97438 * 23 22 20 25 25 N 1.33878 * 109.20494 * 359.97438 * 23 22 20 26 26 C 1.33875 * 114.47647 * 0.02562 * 25 23 22 27 27 O 1.21226 * 125.39113 * 179.97438 * 26 25 23 28 28 C 1.43430 * 120.53872 * 156.67276 * 9 7 2 29 29 H 0.96992 * 119.99546 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.84176 * 350.06371 * 10 9 7 31 31 H 1.08997 * 109.84338 * 229.07949 * 10 9 7 32 32 H 1.09004 * 108.51973 * 297.16599 * 11 10 9 33 33 H 1.08998 * 108.40557 * 179.56560 * 11 10 9 34 34 H 1.08999 * 110.25296 * 151.62484 * 12 11 10 35 35 H 1.08998 * 110.37010 * 29.63181 * 12 11 10 36 36 H 1.08995 * 109.20763 * 218.02761 * 13 12 11 37 37 H 1.09010 * 109.20212 * 337.38386 * 13 12 11 38 38 H 0.97001 * 120.00037 * 24.99909 * 16 14 13 39 39 H 1.09006 * 109.46478 * 299.99852 * 19 17 16 40 40 H 1.08997 * 109.46763 * 59.99620 * 19 17 16 41 41 H 1.08997 * 110.60069 * 359.97438 * 22 20 19 42 42 H 1.09002 * 110.60599 * 122.96321 * 22 20 19 43 43 H 0.97000 * 122.75601 * 179.97438 * 25 23 22 44 44 H 1.09003 * 108.16241 * 33.29988 * 28 9 7 45 45 H 1.09000 * 108.16624 * 150.08252 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0435 -1.2294 -0.3129 9 7 1.3850 -2.3536 0.3985 10 6 0.1861 -2.2981 1.3011 11 6 -0.9807 -2.6831 0.5081 12 6 -0.8832 -4.0704 -0.1182 13 6 -0.2326 -3.8602 -1.4548 14 6 1.2857 -4.1539 -1.3790 15 1 1.4496 -5.2292 -1.4493 16 7 1.9654 -3.4879 -2.4928 17 6 3.1414 -3.9650 -2.9468 18 8 3.6371 -4.9454 -2.4328 19 6 3.8403 -3.2802 -4.0930 20 6 5.1435 -4.0169 -4.4089 21 1 5.7764 -4.0716 -3.5231 22 6 5.8885 -3.3281 -5.5705 23 6 5.9434 -4.3971 -6.6401 24 8 6.4508 -4.2707 -7.7336 25 7 5.3427 -5.5045 -6.1871 26 6 4.8561 -5.4027 -4.9440 27 8 4.2769 -6.2815 -4.3426 28 6 1.8642 -3.6323 -0.0404 29 1 -0.4849 0.8400 0.0004 30 1 0.0566 -1.2851 1.6823 31 1 0.3152 -2.9929 2.1310 32 1 -1.1141 -1.9518 -0.2891 33 1 -1.8593 -2.6551 1.1526 34 1 -1.8779 -4.4975 -0.2458 35 1 -0.2694 -4.7241 0.5014 36 1 -0.6908 -4.5266 -2.1854 37 1 -0.3828 -2.8269 -1.7681 38 1 1.5691 -2.7036 -2.9036 39 1 3.1947 -3.2918 -4.9712 40 1 4.0626 -2.2490 -3.8190 41 1 5.3304 -2.4610 -5.9235 42 1 6.8941 -3.0401 -5.2641 43 1 5.2657 -6.3137 -6.7164 44 1 2.9482 -3.5735 -0.1385 45 1 1.6345 -4.3651 0.7332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034560322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:24 Heat of formation + Delta-G solvation = -98.458037 kcal Electronic energy + Delta-G solvation = -28690.258492 eV Core-core repulsion = 24707.761437 eV Total energy + Delta-G solvation = -3982.497054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -42.81148 -40.70570 -39.65231 -39.06423 -36.92231 -35.72905 -34.67903 -34.46889 -32.81096 -31.61016 -29.49284 -27.84615 -26.31488 -25.35092 -24.63778 -22.71998 -22.23748 -21.50225 -20.69664 -20.60591 -18.92317 -18.48430 -18.06196 -17.53554 -17.22822 -16.86035 -16.69188 -16.39528 -15.92797 -15.74945 -15.46531 -15.16834 -15.08424 -14.80114 -14.54920 -14.01409 -13.90664 -13.85704 -13.48303 -13.35267 -13.16342 -13.11726 -12.89860 -12.57600 -12.30656 -12.26611 -12.17111 -11.82723 -11.73743 -11.65192 -11.35782 -11.26696 -11.10682 -10.96744 -10.89821 -10.53243 -10.36932 -9.77563 -8.52453 -7.72461 -5.12289 0.52015 1.52869 1.59302 1.62600 1.76114 1.83224 1.95498 2.48420 2.61370 3.19523 3.27804 3.40857 3.47182 3.66959 3.76391 3.99886 4.12420 4.20533 4.34918 4.48865 4.56808 4.60194 4.66702 4.73148 4.76282 4.85862 4.90189 4.94286 4.95793 5.08470 5.10789 5.27352 5.35374 5.39961 5.51601 5.63512 5.66710 5.75957 5.83741 5.89101 6.25368 6.33633 6.49918 6.87099 6.91678 7.26912 7.57089 7.99059 8.51462 9.31325 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003787 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.036900 B = 7392.181598 C = 8762.619332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.056 0.944 9 N -0.592 5.592 10 C 0.166 3.834 11 C -0.120 4.120 12 C -0.106 4.106 13 C -0.099 4.099 14 C 0.128 3.872 15 H 0.064 0.936 16 N -0.706 5.706 17 C 0.492 3.508 18 O -0.566 6.566 19 C -0.123 4.123 20 C -0.102 4.102 21 H 0.130 0.870 22 C -0.139 4.139 23 C 0.536 3.464 24 O -0.524 6.524 25 N -0.679 5.679 26 C 0.525 3.475 27 O -0.492 6.492 28 C 0.158 3.842 29 H 0.246 0.754 30 H 0.059 0.941 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.404 0.596 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.416 0.584 44 H 0.016 0.984 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -4.992 -10.399 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.074 0.926 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.137 4.137 14 C 0.020 3.980 15 H 0.082 0.918 16 N -0.355 5.355 17 C 0.279 3.721 18 O -0.445 6.445 19 C -0.162 4.162 20 C -0.124 4.124 21 H 0.148 0.852 22 C -0.178 4.178 23 C 0.327 3.673 24 O -0.398 6.398 25 N -0.344 5.344 26 C 0.312 3.688 27 O -0.362 6.362 28 C 0.029 3.971 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.239 0.761 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.255 0.745 44 H 0.035 0.965 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.931 -5.803 -10.150 13.110 hybrid contribution -0.020 0.676 -0.198 0.705 sum 5.911 -5.127 -10.348 12.974 Atomic orbital electron populations 1.70098 1.05730 1.25041 1.55064 1.25345 0.95761 0.99921 1.01954 0.85639 0.77744 0.80844 0.77882 1.19875 1.22699 1.22199 1.19158 0.93101 0.86120 1.38974 0.92576 1.44277 1.33775 1.01058 1.52284 1.20105 0.86224 0.98927 0.90498 1.20813 0.97358 0.96501 1.01218 1.20939 1.00037 0.97153 0.96223 1.21534 0.93069 1.01252 0.97837 1.22438 0.92330 0.95304 0.87977 0.91841 1.45952 1.22522 1.32039 1.35032 1.21134 0.81352 0.84267 0.85339 1.90752 1.65745 1.27570 1.60467 1.21678 0.94955 1.01983 0.97622 1.21819 0.98780 0.90585 1.01248 0.85205 1.22688 1.06410 0.98047 0.90608 1.21201 0.74153 0.84332 0.87659 1.90804 1.43880 1.82010 1.23144 1.44876 1.53665 1.18041 1.17866 1.21146 0.76078 0.91231 0.80333 1.90887 1.37963 1.45901 1.61410 1.20713 0.95551 0.87507 0.93363 0.94487 0.92265 0.96790 0.90740 0.94911 0.90886 0.92324 0.92392 0.92356 0.76140 0.86502 0.84305 0.83010 0.83120 0.74469 0.96531 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.89 9.42 21.65 0.20 -46.68 16 2 C -0.03 -1.67 4.91 84.86 0.42 -1.25 16 3 Si 0.95 40.98 29.60 68.60 2.03 43.01 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.24 -11.97 9.63 84.04 0.81 -11.16 16 8 H 0.06 2.80 7.89 -2.91 -0.02 2.78 16 9 N -0.59 -27.06 2.60 -707.89 -1.84 -28.90 16 10 C 0.17 7.38 5.25 83.58 0.44 7.82 16 11 C -0.12 -4.78 5.02 28.35 0.14 -4.64 16 12 C -0.11 -3.52 5.75 29.51 0.17 -3.35 16 13 C -0.10 -3.34 5.23 30.30 0.16 -3.18 16 14 C 0.13 4.59 2.91 46.26 0.13 4.73 16 15 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 16 N -0.71 -22.73 5.09 -436.55 -2.22 -24.95 16 17 C 0.49 15.04 7.33 87.66 0.64 15.68 16 18 O -0.57 -21.83 13.23 18.94 0.25 -21.58 16 19 C -0.12 -2.22 5.04 29.85 0.15 -2.07 16 20 C -0.10 -1.69 2.72 -10.93 -0.03 -1.72 16 21 H 0.13 2.29 8.03 -2.39 -0.02 2.27 16 22 C -0.14 -1.29 6.67 30.46 0.20 -1.08 16 23 C 0.54 8.58 8.55 87.99 0.75 9.33 16 24 O -0.52 -11.92 18.02 -2.84 -0.05 -11.97 16 25 N -0.68 -11.57 5.48 -427.81 -2.34 -13.91 16 26 C 0.52 11.83 7.71 87.99 0.68 12.51 16 27 O -0.49 -16.27 15.42 19.13 0.30 -15.98 16 28 C 0.16 6.51 4.79 87.59 0.42 6.93 16 29 H 0.25 12.60 8.31 -92.71 -0.77 11.83 16 30 H 0.06 2.99 6.05 -2.39 -0.01 2.97 16 31 H 0.01 0.59 8.12 -2.39 -0.02 0.57 16 32 H 0.07 3.42 5.29 -2.38 -0.01 3.40 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.95 6.29 -2.39 -0.02 1.94 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.26 6.59 -2.38 -0.02 2.24 16 38 H 0.40 12.20 8.44 -92.71 -0.78 11.42 16 39 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.15 0.70 7.74 -2.39 -0.02 0.69 16 42 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.42 6.23 8.96 -92.71 -0.83 5.40 16 44 H 0.02 0.74 7.83 -2.39 -0.02 0.72 16 45 H 0.04 1.45 6.88 -2.39 -0.02 1.43 16 Total: -1.00 -69.45 354.52 0.84 -68.61 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.57 Total: 23.82 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 5.09 Total: 28.53 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -6.20 Total: -114.44 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: 0.49 Total: -49.53 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.45 0.84 -68.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034560322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.848 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds