Wall clock time and date at job start Fri Apr 10 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47228 * 325.27455 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27615 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 N 1.46499 * 109.46968 * 180.02562 * 14 13 12 17 17 C 1.34771 * 120.00156 * 85.00648 * 16 14 13 18 18 O 1.21284 * 120.00207 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00265 * 180.02562 * 17 16 14 20 20 C 1.53006 * 109.47418 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.54112 * 307.84965 * 20 19 17 22 22 C 1.54222 * 110.60852 * 185.00099 * 20 19 17 23 23 C 1.51325 * 103.55366 * 241.48395 * 22 20 19 24 24 O 1.21221 * 125.39205 * 180.02562 * 23 22 20 25 25 N 1.33878 * 109.20379 * 359.97438 * 23 22 20 26 26 C 1.33868 * 114.47752 * 0.02562 * 25 23 22 27 27 O 1.21230 * 125.39779 * 180.02562 * 26 25 23 28 28 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 29 29 C 1.53001 * 109.47193 * 205.27576 * 10 9 7 30 30 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 33 33 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 34 34 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 35 35 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 36 36 H 0.97007 * 120.00332 * 265.00292 * 16 14 13 37 37 H 1.08999 * 109.47535 * 299.99713 * 19 17 16 38 38 H 1.09003 * 109.47176 * 59.99874 * 19 17 16 39 39 H 1.09004 * 110.60532 * 359.97438 * 22 20 19 40 40 H 1.08992 * 110.60847 * 122.81110 * 22 20 19 41 41 H 0.96998 * 122.75579 * 179.97438 * 25 23 22 42 42 H 1.09000 * 109.47291 * 180.02562 * 28 14 13 43 43 H 1.08999 * 109.47531 * 59.99527 * 28 14 13 44 44 H 1.08999 * 109.46935 * 300.00059 * 29 10 9 45 45 H 1.09004 * 109.47138 * 59.99988 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5625 -3.2051 0.5936 12 6 4.2636 -2.9787 -1.4307 13 6 5.0280 -4.3040 -1.4247 14 6 6.4130 -4.0911 -0.8102 15 1 6.9629 -3.3571 -1.3992 16 7 7.1452 -5.3600 -0.8050 17 6 7.8320 -5.7462 -1.8984 18 8 7.8435 -5.0435 -2.8869 19 6 8.5847 -7.0517 -1.8933 20 6 9.2718 -7.2496 -3.2460 21 1 8.5561 -7.1311 -4.0595 22 6 9.9468 -8.6346 -3.3145 23 6 11.4119 -8.3062 -3.5031 24 8 12.3058 -9.1184 -3.6065 25 7 11.5640 -6.9765 -3.5388 26 6 10.4263 -6.2842 -3.4036 27 8 10.3352 -5.0754 -3.4075 28 6 6.2614 -3.5834 0.6251 29 6 5.4969 -2.2575 0.6190 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.2770 -3.1307 -1.8684 33 1 4.8132 -2.2444 -2.0197 34 1 5.1364 -4.6655 -2.4473 35 1 4.4781 -5.0380 -0.8359 36 1 7.1357 -5.9222 -0.0146 37 1 9.3354 -7.0353 -1.1032 38 1 7.8887 -7.8717 -1.7163 39 1 9.7935 -9.1825 -2.3847 40 1 9.5669 -9.2050 -4.1620 41 1 12.4278 -6.5500 -3.6526 42 1 7.2480 -3.4313 1.0628 43 1 5.7115 -4.3174 1.2141 44 1 6.0465 -1.5233 0.0299 45 1 5.3890 -1.8957 1.6415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034804236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:08 Heat of formation + Delta-G solvation = -134.783859 kcal Electronic energy + Delta-G solvation = -27158.803715 eV Core-core repulsion = 23174.731454 eV Total energy + Delta-G solvation = -3984.072260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.82268 -40.89596 -39.69395 -39.16046 -36.95747 -36.41671 -34.60634 -34.45901 -32.84783 -31.67028 -30.17049 -28.69166 -26.18121 -25.09749 -23.67213 -22.82959 -22.50612 -21.79900 -21.22064 -20.79416 -19.55113 -18.92537 -18.15183 -17.51103 -17.34694 -16.98560 -16.70673 -16.46597 -16.11884 -15.66936 -15.32658 -15.16930 -15.03134 -14.84348 -14.82585 -14.50583 -14.34624 -13.90212 -13.72276 -13.55767 -13.26417 -13.08457 -12.97984 -12.85531 -12.44427 -12.23520 -12.16254 -12.03353 -11.92913 -11.78439 -11.66985 -11.45655 -11.38170 -11.19880 -11.00870 -10.88518 -10.64478 -9.88416 -9.28843 -8.01306 -5.33662 0.50744 1.37361 1.40533 1.47499 1.75060 1.82632 1.85825 2.27519 2.48889 3.18546 3.25532 3.29962 3.44104 3.61004 3.73987 3.79801 3.89420 4.07858 4.28415 4.36282 4.38803 4.39514 4.56647 4.59067 4.61484 4.65793 4.72231 4.86516 4.89390 4.95741 4.97881 5.07004 5.15083 5.19268 5.25681 5.29309 5.51059 5.59399 5.66489 5.68711 5.79905 6.23650 6.33245 6.74986 6.88953 7.09674 7.49348 7.87474 8.05433 9.20257 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.002129 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.739668 B =13146.158680 C =13330.551094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.953 3.047 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.224 4.224 8 H 0.058 0.942 9 N -0.755 5.755 10 C 0.175 3.825 11 H 0.049 0.951 12 C -0.126 4.126 13 C -0.110 4.110 14 C 0.153 3.847 15 H 0.058 0.942 16 N -0.715 5.715 17 C 0.493 3.507 18 O -0.567 6.567 19 C -0.120 4.120 20 C -0.106 4.106 21 H 0.131 0.869 22 C -0.135 4.135 23 C 0.532 3.468 24 O -0.525 6.525 25 N -0.683 5.683 26 C 0.522 3.478 27 O -0.502 6.502 28 C -0.106 4.106 29 C -0.118 4.118 30 H 0.256 0.744 31 H 0.363 0.637 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.417 0.583 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.414 0.586 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.518 -22.885 -1.161 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.780 3.220 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.175 1.175 7 C -0.355 4.355 8 H 0.076 0.924 9 N -0.397 5.397 10 C 0.068 3.932 11 H 0.068 0.932 12 C -0.167 4.167 13 C -0.149 4.149 14 C 0.048 3.952 15 H 0.076 0.924 16 N -0.368 5.368 17 C 0.280 3.720 18 O -0.445 6.445 19 C -0.159 4.159 20 C -0.128 4.128 21 H 0.149 0.851 22 C -0.174 4.174 23 C 0.323 3.677 24 O -0.400 6.400 25 N -0.347 5.347 26 C 0.310 3.690 27 O -0.373 6.373 28 C -0.144 4.144 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.196 0.804 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.140 0.860 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.168 0.832 41 H 0.253 0.747 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.582 -22.324 -1.879 33.260 hybrid contribution 0.300 1.819 -0.227 1.857 sum 24.882 -20.505 -2.105 32.311 Atomic orbital electron populations 1.69875 1.07031 1.26504 1.60148 1.25487 0.96124 1.01156 1.03132 0.85437 0.78778 0.79926 0.77818 1.21093 1.22249 1.17480 1.19044 0.82684 0.93335 1.40438 0.92391 1.42876 1.02485 1.04162 1.90218 1.20480 0.91940 0.86895 0.93900 0.93249 1.22015 0.98750 0.96838 0.99069 1.21735 0.95603 0.96936 1.00634 1.20745 0.91325 0.85909 0.97256 0.92413 1.45902 1.51023 1.22661 1.17170 1.21345 0.79129 0.88794 0.82701 1.90813 1.62698 1.56347 1.34675 1.21741 1.01494 0.96019 0.96678 1.21891 0.95984 0.92940 1.01941 0.85139 1.22699 0.87691 0.96737 1.10297 1.21364 0.93494 0.80669 0.72185 1.90821 1.49281 1.52089 1.47813 1.44956 1.12799 1.10365 1.66622 1.21327 0.85905 0.88494 0.73258 1.90893 1.85433 1.15142 1.45795 1.21653 1.01379 0.96665 0.94730 1.21718 0.94544 0.98188 1.01259 0.93480 0.80400 0.94468 0.93840 0.93188 0.90565 0.74523 0.86030 0.82278 0.82222 0.83246 0.74698 0.89475 0.89265 0.92473 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.95 46.41 27.73 68.60 1.90 48.32 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 7 C -0.22 -12.81 10.41 84.03 0.87 -11.94 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 9 N -0.75 -35.31 4.92 -322.94 -1.59 -36.90 16 10 C 0.18 6.39 2.77 44.99 0.12 6.52 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.13 -4.43 5.50 30.59 0.17 -4.26 16 13 C -0.11 -2.90 5.49 30.59 0.17 -2.74 16 14 C 0.15 3.39 2.45 44.99 0.11 3.50 16 15 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 16 N -0.71 -10.34 5.08 -442.53 -2.25 -12.59 16 17 C 0.49 8.38 7.49 87.66 0.66 9.03 16 18 O -0.57 -16.31 13.63 17.21 0.23 -16.07 16 19 C -0.12 -0.54 5.01 29.85 0.15 -0.39 16 20 C -0.11 -0.75 2.68 -10.93 -0.03 -0.78 16 21 H 0.13 1.14 7.89 -2.39 -0.02 1.13 16 22 C -0.14 -0.10 6.67 30.46 0.20 0.11 16 23 C 0.53 5.15 8.55 88.00 0.75 5.91 16 24 O -0.53 -9.16 18.02 -2.85 -0.05 -9.21 16 25 N -0.68 -7.71 5.48 -427.79 -2.34 -10.05 16 26 C 0.52 8.18 7.72 87.99 0.68 8.86 16 27 O -0.50 -13.59 15.91 17.38 0.28 -13.31 16 28 C -0.11 -2.02 5.39 30.61 0.17 -1.86 16 29 C -0.12 -3.26 5.39 30.61 0.17 -3.09 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.36 16.48 5.66 -92.71 -0.52 15.95 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 2.62 8.60 -92.70 -0.80 1.82 16 37 H 0.12 0.06 8.12 -2.39 -0.02 0.04 16 38 H 0.16 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.16 -0.90 7.74 -2.38 -0.02 -0.92 16 40 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.41 4.30 8.96 -92.71 -0.83 3.47 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -90.12 366.93 -0.03 -90.16 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -1.17 Total: 17.87 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.65 Total: 5.28 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.88 Total: -123.02 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.32 kcal Total: -90.12 -0.03 -90.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034804236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.626 kcal (2) G-P(sol) polarization free energy of solvation -90.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds