Wall clock time and date at job start Fri Apr 10 2020 18:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.52203 * 2 1 4 4 C 1.53196 * 109.49755 * 120.08131 * 2 1 3 5 5 N 1.46919 * 108.77232 * 174.59177 * 4 2 1 6 6 C 1.34777 * 120.63342 * 126.37295 * 5 4 2 7 7 O 1.21582 * 119.99733 * 352.32050 * 6 5 4 8 8 C 1.47615 * 120.00136 * 172.32341 * 6 5 4 9 9 N 1.33055 * 120.53247 * 352.89170 * 8 6 5 10 10 N 1.28710 * 120.37083 * 179.97438 * 9 8 6 11 11 C 1.32946 * 121.55575 * 0.02562 * 10 9 8 12 12 O 1.35292 * 119.47150 * 180.02562 * 11 10 9 13 13 N 1.32472 * 121.05598 * 359.97212 * 11 10 9 14 14 C 1.32860 * 119.51533 * 359.78198 * 13 11 10 15 15 O 1.35295 * 120.71753 * 180.25267 * 14 13 11 16 16 C 1.46927 * 118.73765 * 306.38600 * 5 4 2 17 17 C 1.53196 * 108.77520 * 53.61374 * 16 5 4 18 18 C 1.53035 * 109.49658 * 239.91894 * 2 1 3 19 19 H 1.08998 * 109.46208 * 58.67807 * 18 2 1 20 20 N 1.46501 * 109.46335 * 298.70218 * 18 2 1 21 21 C 1.36930 * 120.00023 * 155.00285 * 20 18 2 22 22 H 1.08000 * 120.00504 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99802 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00127 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47066 * 269.99854 * 25 23 21 27 27 H 1.48491 * 109.47198 * 29.99806 * 25 23 21 28 28 H 1.48500 * 109.46837 * 150.00257 * 25 23 21 29 29 H 1.09005 * 109.46990 * 180.08466 * 1 2 3 30 30 H 1.09003 * 109.46748 * 300.07802 * 1 2 3 31 31 H 1.08994 * 109.46917 * 60.08262 * 1 2 3 32 32 H 1.09004 * 109.58433 * 294.37647 * 4 2 1 33 33 H 1.08994 * 109.58531 * 54.65414 * 4 2 1 34 34 H 0.96691 * 114.00227 * 89.99466 * 12 11 10 35 35 H 0.96703 * 113.99729 * 270.21591 * 15 14 13 36 36 H 1.09001 * 109.58534 * 173.40176 * 16 5 4 37 37 H 1.08998 * 109.59025 * 293.68207 * 16 5 4 38 38 H 1.08994 * 109.49347 * 185.41220 * 17 16 5 39 39 H 1.08996 * 109.49524 * 65.31801 * 17 16 5 40 40 H 0.97000 * 119.99553 * 335.00321 * 20 18 2 41 41 H 0.97002 * 120.00442 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2812 -0.3855 2.1779 7 8 3.7855 0.2316 3.1008 8 6 5.7335 -0.6490 2.1619 9 7 6.2667 -1.4406 1.2348 10 7 7.5336 -1.6678 1.2234 11 6 8.3455 -1.1271 2.1266 12 8 9.6708 -1.3942 2.0748 13 7 7.8779 -0.3301 3.0758 14 6 6.5773 -0.0629 3.1242 15 8 6.0742 0.7518 4.0800 16 6 4.1053 -1.4266 -0.0307 17 6 3.5709 -0.6949 -1.2660 18 6 2.0408 -0.7231 -1.2483 19 1 1.6584 -0.2243 -2.1389 20 7 1.5784 -2.1131 -1.2308 21 6 1.4483 -2.8062 -2.4045 22 1 1.6862 -2.3281 -3.3433 23 6 1.0096 -4.1230 -2.3880 24 7 0.7193 -4.7056 -1.2440 25 14 0.8315 -5.0684 -3.9893 26 1 -0.5403 -4.8791 -4.5258 27 1 1.8221 -4.5648 -4.9742 28 1 1.0708 -6.5127 -3.7406 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5125 -0.8907 32 1 1.7638 -0.1579 2.1389 33 1 1.6033 -1.7206 1.2994 34 1 10.1764 -0.7729 1.5332 35 1 5.8076 0.2922 4.8880 36 1 5.1896 -1.3244 0.0138 37 1 3.8398 -2.4823 -0.0854 38 1 3.9335 -1.1896 -2.1670 39 1 3.9159 0.3389 -1.2541 40 1 1.3644 -2.5424 -0.3877 41 1 0.4131 -5.6260 -1.2324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036090315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:34 Heat of formation + Delta-G solvation = -20.909260 kcal Electronic energy + Delta-G solvation = -28278.064533 eV Core-core repulsion = 24195.389903 eV Total energy + Delta-G solvation = -4082.674631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.44807 -41.29302 -39.73502 -38.90647 -38.84945 -36.01449 -35.55367 -34.53898 -33.15946 -32.81804 -30.91762 -28.12107 -27.51424 -26.49201 -25.83975 -25.21371 -23.05366 -22.09437 -21.21307 -20.91397 -19.92401 -19.68300 -19.23320 -18.22685 -17.64418 -17.26221 -16.99085 -16.58786 -16.22623 -16.02108 -15.71292 -15.26740 -15.12409 -14.87018 -14.52620 -14.28602 -14.23654 -14.02092 -13.78261 -13.39802 -12.97842 -12.92516 -12.82691 -12.74036 -12.72166 -12.51964 -12.30822 -12.08761 -11.91130 -11.72935 -11.54905 -11.31587 -11.21285 -11.11795 -10.86058 -10.43708 -9.66811 -8.87767 -7.85343 -5.10726 -1.28234 -1.03475 1.18915 1.30160 1.51786 1.52465 1.59996 1.68436 1.76204 2.02408 2.37874 2.62880 3.02542 3.25733 3.49030 3.61527 3.86870 3.91923 4.12270 4.12801 4.17200 4.42789 4.48713 4.56425 4.68444 4.79723 4.91027 5.04704 5.08955 5.17247 5.18222 5.25385 5.31952 5.38453 5.51605 5.62118 5.66087 6.17146 6.19887 6.23375 6.36795 6.72760 6.87821 7.44732 8.21001 8.44683 9.37958 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003840 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.435927 B = 7289.449129 C = 8561.638335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.122 3.878 5 N -0.576 5.576 6 C 0.577 3.423 7 O -0.536 6.536 8 C -0.057 4.057 9 N -0.112 5.112 10 N -0.304 5.304 11 C 0.491 3.509 12 O -0.446 6.446 13 N -0.511 5.511 14 C 0.434 3.566 15 O -0.446 6.446 16 C 0.094 3.906 17 C -0.143 4.143 18 C 0.171 3.829 19 H 0.048 0.952 20 N -0.723 5.723 21 C -0.226 4.226 22 H 0.074 0.926 23 C -0.071 4.071 24 N -0.968 5.968 25 Si 0.961 3.039 26 H -0.293 1.293 27 H -0.271 1.271 28 H -0.302 1.302 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.446 0.554 35 H 0.442 0.558 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.374 0.626 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 12.576 8.426 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.106 0.894 4 C 0.000 4.000 5 N -0.306 5.306 6 C 0.362 3.638 7 O -0.413 6.413 8 C -0.210 4.210 9 N 0.030 4.970 10 N -0.166 5.166 11 C 0.187 3.813 12 O -0.253 6.253 13 N -0.255 5.255 14 C 0.236 3.764 15 O -0.257 6.257 16 C -0.029 4.029 17 C -0.183 4.183 18 C 0.062 3.938 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.358 4.358 22 H 0.092 0.908 23 C -0.263 4.263 24 N -0.619 5.619 25 Si 0.792 3.208 26 H -0.220 1.220 27 H -0.196 1.196 28 H -0.229 1.229 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.313 0.687 35 H 0.309 0.691 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.208 0.792 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.947 12.270 8.076 20.256 hybrid contribution -0.501 -0.712 -0.025 0.871 sum 13.446 11.557 8.051 19.473 Atomic orbital electron populations 1.21598 0.93724 1.01597 1.01946 1.21639 0.96811 0.99385 0.94008 0.89360 1.21702 0.77752 1.00931 0.99626 1.48028 1.07222 1.57683 1.17707 1.17182 0.83710 0.79872 0.83072 1.90798 1.73552 1.40904 1.36045 1.23969 0.97948 1.00027 0.99028 1.74073 1.03087 1.06077 1.13730 1.73939 0.98810 1.21789 1.22078 1.21940 0.89149 0.85426 0.84786 1.84668 1.10403 1.56242 1.73946 1.68330 1.15193 1.15874 1.26089 1.19755 0.85438 0.82259 0.88945 1.84612 1.80130 1.32180 1.28761 1.22658 1.00709 0.96870 0.82626 1.22433 0.98638 0.99849 0.97426 1.20463 0.92015 0.85272 0.96040 0.93409 1.42555 1.79004 1.09259 1.05592 1.19559 1.34585 0.93915 0.87722 0.90795 1.25333 1.03650 0.98361 0.98961 1.69788 1.53927 1.12821 1.25394 0.85319 0.77579 0.77583 0.80359 1.22016 1.19628 1.22948 0.94088 0.91288 0.92299 0.88426 0.92328 0.68699 0.69058 0.85011 0.92769 0.91660 0.91105 0.79226 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.05 71.98 0.65 -3.25 16 2 C -0.10 -2.99 2.67 -10.71 -0.03 -3.02 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.12 3.84 5.43 86.37 0.47 4.31 16 5 N -0.58 -17.90 2.97 -822.57 -2.44 -20.34 16 6 C 0.58 16.85 7.65 86.72 0.66 17.51 16 7 O -0.54 -16.47 14.73 16.32 0.24 -16.23 16 8 C -0.06 -1.47 6.70 42.05 0.28 -1.18 16 9 N -0.11 -3.02 7.43 -48.09 -0.36 -3.38 16 10 N -0.30 -7.50 11.60 -174.22 -2.02 -9.53 16 11 C 0.49 9.98 8.81 180.33 1.59 11.57 16 12 O -0.45 -6.26 13.63 -85.77 -1.17 -7.43 16 13 N -0.51 -10.68 10.57 -424.96 -4.49 -15.18 16 14 C 0.43 9.43 7.84 85.16 0.67 10.10 16 15 O -0.45 -8.24 11.79 -65.51 -0.77 -9.01 16 16 C 0.09 3.09 5.67 86.36 0.49 3.58 16 17 C -0.14 -4.63 5.78 30.67 0.18 -4.45 16 18 C 0.17 6.16 2.53 45.02 0.11 6.27 16 19 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 20 N -0.72 -33.21 3.65 -322.82 -1.18 -34.39 16 21 C -0.23 -11.76 9.93 84.03 0.83 -10.93 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 24 N -0.97 -57.41 13.06 21.65 0.28 -57.12 16 25 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H 0.04 1.48 7.54 -2.38 -0.02 1.46 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.10 2.87 7.00 -2.39 -0.02 2.86 16 33 H 0.06 2.13 6.64 -2.39 -0.02 2.12 16 34 H 0.45 0.99 9.06 -74.06 -0.67 0.32 16 35 H 0.44 4.16 9.06 -74.05 -0.67 3.49 16 36 H 0.13 4.02 3.94 -115.60 -0.46 3.56 16 37 H 0.05 2.17 7.74 -2.39 -0.02 2.15 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.37 18.68 5.93 -92.71 -0.55 18.13 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.74 339.70 -4.72 -73.46 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -1.21 Total: 24.77 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 6.37 Total: 27.06 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -10.21 Total: -139.93 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.70 Total: -32.67 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.74 -4.72 -73.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036090315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.547 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds