Wall clock time and date at job start Fri Apr 10 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00544 * 2 1 4 4 H 1.48506 * 109.47490 * 269.99928 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.99857 * 3 2 1 6 6 H 1.48496 * 109.47525 * 149.99591 * 3 2 1 7 7 C 1.38815 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46908 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52830 * 109.18836 * 155.00516 * 10 9 7 12 12 C 1.53153 * 110.01741 * 177.99668 * 11 10 9 13 13 H 1.09180 * 110.26790 * 119.72351 * 12 11 10 14 14 C 1.53228 * 109.20315 * 241.28547 * 12 11 10 15 15 C 1.52896 * 109.90619 * 61.74236 * 14 12 11 16 16 C 1.52881 * 110.46412 * 58.12348 * 15 14 12 17 17 C 1.53430 * 109.74328 * 301.47369 * 16 15 14 18 18 H 1.08929 * 110.33785 * 177.34083 * 17 16 15 19 19 C 1.52746 * 109.41022 * 276.13224 * 10 9 7 20 20 N 1.47483 * 108.29119 * 358.60890 * 12 11 10 21 21 C 1.34675 * 121.84916 * 121.44552 * 20 12 11 22 22 O 1.21289 * 119.99739 * 179.70445 * 21 20 12 23 23 C 1.50693 * 120.00216 * 359.69526 * 21 20 12 24 24 H 1.09005 * 110.50717 * 321.29486 * 23 21 20 25 25 C 1.54092 * 110.68895 * 84.12065 * 23 21 20 26 26 O 1.45704 * 104.00994 * 118.63504 * 25 23 21 27 27 C 1.33773 * 109.47307 * 0.02562 * 26 25 23 28 28 O 1.21510 * 123.06598 * 180.26947 * 27 26 25 29 29 N 1.34004 * 113.85828 * 359.97438 * 27 26 25 30 30 H 0.97006 * 119.99480 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00020 * 0.02562 * 9 7 2 32 32 H 1.09082 * 108.56315 * 35.61576 * 10 9 7 33 33 H 1.09107 * 109.43850 * 56.96589 * 11 10 9 34 34 H 1.09468 * 109.13969 * 298.11488 * 11 10 9 35 35 H 1.09236 * 109.35861 * 301.26394 * 14 12 11 36 36 H 1.09248 * 109.07645 * 181.92526 * 14 12 11 37 37 H 1.08962 * 109.53061 * 296.91958 * 15 14 12 38 38 H 1.09280 * 108.79391 * 178.22432 * 15 14 12 39 39 H 1.08971 * 109.41228 * 181.26515 * 16 15 14 40 40 H 1.08995 * 109.47478 * 61.90448 * 16 15 14 41 41 H 1.09510 * 109.26871 * 61.54687 * 19 10 9 42 42 H 1.09017 * 109.91680 * 302.49580 * 19 10 9 43 43 H 1.08999 * 110.52576 * 237.26585 * 25 23 21 44 44 H 1.09009 * 110.51923 * 359.86503 * 25 23 21 45 45 H 0.96999 * 125.55270 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0599 -3.6604 -0.0005 11 6 1.1781 -4.7495 0.6093 12 6 1.9073 -6.0958 0.5732 13 1 2.0355 -6.4838 1.5857 14 6 1.1033 -7.0818 -0.2808 15 6 0.9992 -6.5633 -1.7154 16 6 2.3917 -6.3593 -2.3124 17 6 3.1845 -5.3670 -1.4516 18 1 4.1948 -5.2503 -1.8417 19 6 2.4470 -4.0231 -1.4329 20 7 3.2169 -5.8957 -0.0749 21 6 4.3724 -6.1850 0.5534 22 8 5.4307 -6.0123 -0.0135 23 6 4.3506 -6.7230 1.9609 24 1 3.5742 -6.2302 2.5461 25 6 4.1388 -8.2493 1.9570 26 8 5.3432 -8.7741 2.5871 27 6 6.1504 -7.7606 2.9197 28 8 7.2280 -7.9204 3.4578 29 7 5.6646 -6.5533 2.5997 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.9616 -3.5408 0.6016 33 1 0.2434 -4.8153 0.0504 34 1 0.9490 -4.4866 1.6470 35 1 0.1030 -7.1958 0.1431 36 1 1.6074 -8.0510 -0.2770 37 1 0.4504 -5.6220 -1.7236 38 1 0.4506 -7.2940 -2.3148 39 1 2.2979 -5.9689 -3.3254 40 1 2.9154 -7.3146 -2.3478 41 1 3.1041 -3.2460 -1.8375 42 1 1.5540 -4.0815 -2.0555 43 1 3.2565 -8.5142 2.5395 44 1 4.0467 -8.6197 0.9359 45 1 6.1075 -5.7059 2.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039272681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:52 Heat of formation + Delta-G solvation = -83.302496 kcal Electronic energy + Delta-G solvation = -29275.159734 eV Core-core repulsion = 25293.319873 eV Total energy + Delta-G solvation = -3981.839861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13969 -40.81718 -38.35319 -37.30274 -35.06898 -34.95687 -33.30666 -32.67009 -32.07709 -30.10643 -28.95534 -25.99738 -25.63112 -24.58791 -23.25228 -22.62815 -22.03551 -21.10916 -20.44458 -18.51776 -18.38820 -17.81935 -17.19204 -16.71174 -16.59918 -15.77897 -15.59156 -15.00234 -14.86273 -14.55754 -14.53824 -14.33183 -13.96685 -13.93271 -13.70940 -13.57170 -13.35895 -13.03276 -12.74086 -12.57276 -12.13731 -11.64828 -11.38135 -11.17296 -11.08255 -11.04685 -10.98661 -10.92846 -10.88662 -10.59467 -10.52032 -10.33639 -10.19234 -9.90842 -9.72841 -9.41183 -9.02165 -8.63378 -7.07252 -5.86134 -3.15384 2.17237 2.29283 2.49201 2.74121 3.26037 3.37788 3.44240 3.44805 3.70305 3.93538 4.26018 4.43554 4.52012 4.62699 4.65529 4.74058 4.84627 4.92674 4.98305 5.06697 5.15442 5.24243 5.36926 5.37587 5.55283 5.62107 5.70529 5.76755 5.83730 5.92422 5.93523 6.02557 6.06794 6.22883 6.33753 6.36431 6.49066 6.57619 6.77142 6.91887 6.93179 7.30542 7.62232 7.81189 7.93663 8.32118 9.44105 9.98698 10.34140 11.36218 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.003999 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.895075 B = 6999.878381 C = 8190.936633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.190 3.810 11 C -0.139 4.139 12 C 0.134 3.866 13 H 0.090 0.910 14 C -0.126 4.126 15 C -0.122 4.122 16 C -0.124 4.124 17 C 0.144 3.856 18 H 0.098 0.902 19 C -0.146 4.146 20 N -0.589 5.589 21 C 0.508 3.492 22 O -0.525 6.525 23 C 0.074 3.926 24 H 0.128 0.872 25 C 0.056 3.944 26 O -0.324 6.324 27 C 0.652 3.348 28 O -0.520 6.520 29 N -0.708 5.708 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -18.090 0.613 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.080 3.920 11 C -0.178 4.178 12 C 0.030 3.970 13 H 0.108 0.892 14 C -0.164 4.164 15 C -0.160 4.160 16 C -0.163 4.163 17 C 0.041 3.959 18 H 0.116 0.884 19 C -0.187 4.187 20 N -0.322 5.322 21 C 0.293 3.707 22 O -0.401 6.401 23 C -0.037 4.037 24 H 0.146 0.854 25 C -0.019 4.019 26 O -0.234 6.234 27 C 0.404 3.596 28 O -0.404 6.404 29 N -0.381 5.381 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.127 0.873 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.893 -18.331 0.633 18.363 hybrid contribution 0.039 1.624 -0.153 1.631 sum 0.932 -16.707 0.481 16.740 Atomic orbital electron populations 1.69652 1.05093 1.25738 1.57555 1.24713 0.95482 0.97646 1.02794 0.86231 0.78728 0.83882 0.77606 1.21663 1.21726 1.20758 1.19204 0.90932 0.84060 1.42943 0.91334 1.42532 1.05676 0.99664 1.88712 1.19868 0.94019 0.85652 0.92454 1.22339 0.99658 0.93219 1.02553 1.21721 0.82668 0.96776 0.95860 0.89205 1.22006 1.00330 0.97906 0.96181 1.21500 0.97044 1.02234 0.95182 1.21918 0.95986 0.99199 0.99171 1.21651 1.00679 0.93718 0.79857 0.88438 1.22763 1.00355 0.94017 1.01554 1.48473 1.05076 1.62670 1.15935 1.20269 0.84110 0.79006 0.87318 1.90761 1.29858 1.52878 1.66625 1.22380 0.88843 0.98006 0.94428 0.85435 1.24238 0.87390 0.89162 1.01126 1.87284 1.30843 1.31811 1.73425 1.18393 0.83551 0.79733 0.77900 1.91090 1.18353 1.84380 1.46596 1.45681 1.20459 1.09335 1.62583 0.93472 0.78327 0.93839 0.90631 0.91064 0.90345 0.91907 0.90428 0.92035 0.90739 0.92170 0.91515 0.91225 0.86223 0.87261 0.71407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.32 9.91 -15.06 -0.15 -6.47 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.73 -16.51 5.13 -53.34 -0.27 -16.79 16 10 C 0.19 3.26 2.49 -67.93 -0.17 3.09 16 11 C -0.14 -1.72 4.88 -26.74 -0.13 -1.85 16 12 C 0.13 1.17 3.29 -67.20 -0.22 0.95 16 13 H 0.09 0.52 5.72 -51.83 -0.30 0.23 16 14 C -0.13 -0.90 5.37 -26.67 -0.14 -1.04 16 15 C -0.12 -1.07 5.39 -26.85 -0.14 -1.21 16 16 C -0.12 -1.23 5.39 -26.57 -0.14 -1.37 16 17 C 0.14 1.81 3.49 -67.00 -0.23 1.57 16 18 H 0.10 1.39 7.20 -51.97 -0.37 1.01 16 19 C -0.15 -2.27 4.98 -26.70 -0.13 -2.40 16 20 N -0.59 -6.49 1.82 -156.44 -0.28 -6.78 16 21 C 0.51 6.13 6.86 -11.03 -0.08 6.06 16 22 O -0.53 -8.55 16.19 5.55 0.09 -8.46 16 23 C 0.07 0.65 3.18 -68.19 -0.22 0.43 16 24 H 0.13 0.80 6.73 -51.93 -0.35 0.45 16 25 C 0.06 0.39 7.70 37.73 0.29 0.69 16 26 O -0.32 -3.72 11.09 -37.84 -0.42 -4.14 16 27 C 0.65 8.86 9.16 53.71 0.49 9.35 16 28 O -0.52 -9.04 18.04 -19.12 -0.34 -9.39 16 29 N -0.71 -7.85 5.66 -59.36 -0.34 -8.18 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.38 9.26 7.79 -40.82 -0.32 8.95 16 32 H 0.04 0.83 7.83 -51.88 -0.41 0.42 16 33 H 0.08 0.93 6.46 -51.87 -0.34 0.60 16 34 H 0.07 0.90 8.18 -51.66 -0.42 0.48 16 35 H 0.08 0.47 8.16 -51.80 -0.42 0.05 16 36 H 0.06 0.37 8.16 -51.79 -0.42 -0.05 16 37 H 0.08 0.81 5.22 -51.95 -0.27 0.53 16 38 H 0.06 0.46 8.17 -51.77 -0.42 0.04 16 39 H 0.07 0.72 8.14 -51.95 -0.42 0.29 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.21 8.18 -51.64 -0.42 0.78 16 42 H 0.07 1.07 6.34 -51.92 -0.33 0.74 16 43 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.68 7.73 -51.92 -0.40 0.28 16 45 H 0.44 4.61 8.96 -40.82 -0.37 4.25 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -34.54 350.85 -8.03 -42.57 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.37 Total: 7.85 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.07 Total: 7.41 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.17 Total: -57.91 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.67 Total: -21.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.54 -8.03 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039272681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.736 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds