Wall clock time and date at job start Fri Apr 10 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00544 * 2 1 4 4 H 1.48506 * 109.47490 * 269.99928 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.99857 * 3 2 1 6 6 H 1.48496 * 109.47525 * 149.99591 * 3 2 1 7 7 C 1.38815 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46908 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52830 * 109.18836 * 155.00516 * 10 9 7 12 12 C 1.53153 * 110.01741 * 177.99668 * 11 10 9 13 13 H 1.09180 * 110.26790 * 119.72351 * 12 11 10 14 14 C 1.53228 * 109.20315 * 241.28547 * 12 11 10 15 15 C 1.52896 * 109.90619 * 61.74236 * 14 12 11 16 16 C 1.52881 * 110.46412 * 58.12348 * 15 14 12 17 17 C 1.53430 * 109.74328 * 301.47369 * 16 15 14 18 18 H 1.08929 * 110.33785 * 177.34083 * 17 16 15 19 19 C 1.52746 * 109.41022 * 276.13224 * 10 9 7 20 20 N 1.47483 * 108.29119 * 358.60890 * 12 11 10 21 21 C 1.34675 * 121.84916 * 121.44552 * 20 12 11 22 22 O 1.21289 * 119.99739 * 179.70445 * 21 20 12 23 23 C 1.50693 * 120.00216 * 359.69526 * 21 20 12 24 24 H 1.09005 * 110.50717 * 321.29486 * 23 21 20 25 25 C 1.54092 * 110.68895 * 84.12065 * 23 21 20 26 26 O 1.45704 * 104.00994 * 118.63504 * 25 23 21 27 27 C 1.33773 * 109.47307 * 0.02562 * 26 25 23 28 28 O 1.21510 * 123.06598 * 180.26947 * 27 26 25 29 29 N 1.34004 * 113.85828 * 359.97438 * 27 26 25 30 30 H 0.97006 * 119.99480 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00020 * 0.02562 * 9 7 2 32 32 H 1.09082 * 108.56315 * 35.61576 * 10 9 7 33 33 H 1.09107 * 109.43850 * 56.96589 * 11 10 9 34 34 H 1.09468 * 109.13969 * 298.11488 * 11 10 9 35 35 H 1.09236 * 109.35861 * 301.26394 * 14 12 11 36 36 H 1.09248 * 109.07645 * 181.92526 * 14 12 11 37 37 H 1.08962 * 109.53061 * 296.91958 * 15 14 12 38 38 H 1.09280 * 108.79391 * 178.22432 * 15 14 12 39 39 H 1.08971 * 109.41228 * 181.26515 * 16 15 14 40 40 H 1.08995 * 109.47478 * 61.90448 * 16 15 14 41 41 H 1.09510 * 109.26871 * 61.54687 * 19 10 9 42 42 H 1.09017 * 109.91680 * 302.49580 * 19 10 9 43 43 H 1.08999 * 110.52576 * 237.26585 * 25 23 21 44 44 H 1.09009 * 110.51923 * 359.86503 * 25 23 21 45 45 H 0.96999 * 125.55270 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0599 -3.6604 -0.0005 11 6 1.1781 -4.7495 0.6093 12 6 1.9073 -6.0958 0.5732 13 1 2.0355 -6.4838 1.5857 14 6 1.1033 -7.0818 -0.2808 15 6 0.9992 -6.5633 -1.7154 16 6 2.3917 -6.3593 -2.3124 17 6 3.1845 -5.3670 -1.4516 18 1 4.1948 -5.2503 -1.8417 19 6 2.4470 -4.0231 -1.4329 20 7 3.2169 -5.8957 -0.0749 21 6 4.3724 -6.1850 0.5534 22 8 5.4307 -6.0123 -0.0135 23 6 4.3506 -6.7230 1.9609 24 1 3.5742 -6.2302 2.5461 25 6 4.1388 -8.2493 1.9570 26 8 5.3432 -8.7741 2.5871 27 6 6.1504 -7.7606 2.9197 28 8 7.2280 -7.9204 3.4578 29 7 5.6646 -6.5533 2.5997 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.9616 -3.5408 0.6016 33 1 0.2434 -4.8153 0.0504 34 1 0.9490 -4.4866 1.6470 35 1 0.1030 -7.1958 0.1431 36 1 1.6074 -8.0510 -0.2770 37 1 0.4504 -5.6220 -1.7236 38 1 0.4506 -7.2940 -2.3148 39 1 2.2979 -5.9689 -3.3254 40 1 2.9154 -7.3146 -2.3478 41 1 3.1041 -3.2460 -1.8375 42 1 1.5540 -4.0815 -2.0555 43 1 3.2565 -8.5142 2.5395 44 1 4.0467 -8.6197 0.9359 45 1 6.1075 -5.7059 2.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039272681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:49 Heat of formation + Delta-G solvation = -109.824812 kcal Electronic energy + Delta-G solvation = -29276.309827 eV Core-core repulsion = 25293.319873 eV Total energy + Delta-G solvation = -3982.989955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00895 -41.77473 -39.40071 -38.34238 -36.65621 -35.83427 -34.19451 -33.88520 -33.49527 -31.12799 -30.36115 -26.98459 -26.68112 -25.72410 -24.66696 -23.55054 -22.94545 -22.00155 -21.66838 -19.47834 -19.32913 -19.27221 -18.29304 -17.78420 -17.59499 -17.02903 -16.58951 -16.22464 -15.92749 -15.73589 -15.43855 -15.29160 -15.19632 -15.08562 -14.69721 -14.65079 -14.31256 -14.09117 -13.81333 -13.62996 -13.37285 -12.96048 -12.84153 -12.65755 -12.33623 -12.21905 -12.05355 -11.94780 -11.89487 -11.85317 -11.79440 -11.53708 -11.47227 -11.25074 -11.06970 -10.93064 -10.30581 -9.62862 -9.00347 -7.97019 -5.23656 1.23916 1.39700 1.43882 1.45033 1.52483 1.60165 1.84529 2.51801 2.53321 3.02123 3.14985 3.36371 3.63106 3.67085 3.86387 3.91109 3.98350 4.04789 4.11053 4.15865 4.31280 4.37421 4.39177 4.43280 4.46819 4.65366 4.69405 4.74766 4.94541 5.01566 5.04965 5.07277 5.15245 5.28801 5.30065 5.43841 5.51175 5.53150 5.57722 5.59696 5.63343 6.05930 6.26099 6.40399 6.84570 7.00224 7.33648 8.09639 8.33465 9.25738 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.003999 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.895075 B = 6999.878381 C = 8190.936633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.960 3.040 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.062 0.938 9 N -0.736 5.736 10 C 0.187 3.813 11 C -0.131 4.131 12 C 0.135 3.865 13 H 0.135 0.865 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.117 4.117 17 C 0.148 3.852 18 H 0.073 0.927 19 C -0.135 4.135 20 N -0.585 5.585 21 C 0.505 3.495 22 O -0.577 6.577 23 C 0.077 3.923 24 H 0.165 0.835 25 C 0.054 3.946 26 O -0.333 6.333 27 C 0.651 3.349 28 O -0.571 6.571 29 N -0.705 5.705 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.174 0.826 44 H 0.121 0.879 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -20.707 1.416 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.080 0.920 9 N -0.376 5.376 10 C 0.079 3.921 11 C -0.169 4.169 12 C 0.033 3.967 13 H 0.153 0.847 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.155 4.155 17 C 0.044 3.956 18 H 0.092 0.908 19 C -0.175 4.175 20 N -0.316 5.316 21 C 0.291 3.709 22 O -0.456 6.456 23 C -0.032 4.032 24 H 0.182 0.818 25 C -0.020 4.020 26 O -0.243 6.243 27 C 0.404 3.596 28 O -0.459 6.459 29 N -0.376 5.376 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.191 0.809 44 H 0.139 0.861 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.754 -20.986 1.424 21.048 hybrid contribution 0.533 2.449 -0.501 2.556 sum -0.222 -18.537 0.924 18.561 Atomic orbital electron populations 1.69769 1.06167 1.25914 1.59512 1.25351 0.96248 1.00381 1.03927 0.85347 0.77781 0.80578 0.77319 1.21753 1.21888 1.20144 1.19441 0.90829 0.85649 1.40947 0.92041 1.42706 1.05430 1.00746 1.88682 1.20083 0.93724 0.85199 0.93125 1.22261 0.99121 0.93456 1.02110 1.22034 0.80972 0.95102 0.98607 0.84729 1.22047 1.01562 0.98090 0.94233 1.21512 0.95652 1.01927 0.97027 1.21856 0.96639 0.98579 0.98433 1.21399 0.99386 0.92963 0.81851 0.90850 1.22560 0.99791 0.94961 1.00233 1.48524 1.06066 1.61797 1.15208 1.20899 0.83381 0.78234 0.88355 1.90750 1.31726 1.55112 1.68036 1.22671 0.88486 0.99940 0.92143 0.81761 1.24801 0.87293 0.87036 1.02828 1.87256 1.32149 1.31435 1.73449 1.18491 0.83205 0.80448 0.77428 1.91041 1.20649 1.85254 1.48946 1.45736 1.21354 1.08716 1.61813 0.93997 0.79258 0.95990 0.90250 0.90763 0.87991 0.89168 0.92515 0.90090 0.91069 0.90863 0.95475 0.91152 0.80853 0.86062 0.71460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.50 13.06 21.65 0.28 -56.21 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.96 45.60 29.55 68.60 2.03 47.63 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -12.73 9.91 84.03 0.83 -11.90 16 8 H 0.06 3.33 7.83 -2.91 -0.02 3.30 16 9 N -0.74 -34.09 5.13 -322.68 -1.66 -35.75 16 10 C 0.19 6.40 2.49 44.77 0.11 6.51 16 11 C -0.13 -2.90 4.88 30.59 0.15 -2.75 16 12 C 0.14 1.74 3.29 44.93 0.15 1.89 16 13 H 0.14 0.61 5.72 -2.29 -0.01 0.59 16 14 C -0.12 -1.04 5.37 30.64 0.16 -0.88 16 15 C -0.12 -1.72 5.39 30.52 0.16 -1.55 16 16 C -0.12 -2.07 5.39 30.70 0.17 -1.90 16 17 C 0.15 3.65 3.49 45.05 0.16 3.81 16 18 H 0.07 2.18 7.20 -2.42 -0.02 2.17 16 19 C -0.13 -4.30 4.98 30.61 0.15 -4.15 16 20 N -0.58 -11.47 1.82 -767.29 -1.40 -12.87 16 21 C 0.50 11.16 6.86 87.67 0.60 11.76 16 22 O -0.58 -18.79 16.19 -3.06 -0.05 -18.84 16 23 C 0.08 1.08 3.18 44.50 0.14 1.22 16 24 H 0.17 1.14 6.73 -2.38 -0.02 1.12 16 25 C 0.05 0.48 7.70 72.35 0.56 1.04 16 26 O -0.33 -6.75 11.09 -47.33 -0.52 -7.27 16 27 C 0.65 17.02 9.16 129.91 1.19 18.21 16 28 O -0.57 -20.12 18.04 19.65 0.35 -19.76 16 29 N -0.71 -14.59 5.66 -573.43 -3.24 -17.84 16 30 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 31 H 0.38 18.42 7.79 -92.71 -0.72 17.70 16 32 H 0.02 0.84 7.83 -2.34 -0.02 0.83 16 33 H 0.08 1.75 6.46 -2.33 -0.02 1.74 16 34 H 0.07 1.64 8.18 -2.14 -0.02 1.62 16 35 H 0.10 0.54 8.16 -2.26 -0.02 0.52 16 36 H 0.09 0.41 8.16 -2.26 -0.02 0.39 16 37 H 0.06 1.04 5.22 -2.41 -0.01 1.03 16 38 H 0.08 0.87 8.17 -2.24 -0.02 0.85 16 39 H 0.07 1.30 8.14 -2.40 -0.02 1.28 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.03 1.04 8.18 -2.12 -0.02 1.02 16 42 H 0.07 2.22 6.34 -2.38 -0.02 2.20 16 43 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.12 0.86 7.73 -2.38 -0.02 0.84 16 45 H 0.44 9.05 8.96 -92.71 -0.83 8.22 16 Total: -1.00 -81.37 350.85 0.29 -81.08 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.50 Total: 21.75 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 5.00 Total: 18.09 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.01 Total: -122.67 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.22 Total: -45.87 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -81.37 0.29 -81.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039272681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.748 kcal (2) G-P(sol) polarization free energy of solvation -81.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds