Wall clock time and date at job start Fri Apr 10 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 299.99983 * 3 2 1 6 6 H 1.48496 * 109.47456 * 59.99958 * 3 2 1 7 7 C 1.38811 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 197.25384 * 7 2 1 9 9 N 1.36940 * 120.00112 * 17.24851 * 7 2 1 10 10 C 1.46921 * 120.67738 * 207.37470 * 9 7 2 11 11 C 1.53195 * 108.89606 * 234.00133 * 10 9 7 12 12 C 1.53135 * 109.28295 * 304.92740 * 11 10 9 13 13 C 1.52483 * 109.60394 * 60.50456 * 12 11 10 14 14 C 1.53835 * 110.21969 * 62.00551 * 13 12 11 15 15 C 1.54501 * 104.88330 * 119.00456 * 14 13 12 16 16 N 1.48361 * 104.55121 * 336.32958 * 15 14 13 17 17 C 1.34777 * 127.73647 * 219.27007 * 16 15 14 18 18 O 1.21270 * 120.00535 * 179.87449 * 17 16 15 19 19 C 1.50708 * 119.99179 * 359.87496 * 17 16 15 20 20 H 1.08999 * 110.50413 * 321.28539 * 19 17 16 21 21 C 1.54091 * 110.56402 * 84.19276 * 19 17 16 22 22 O 1.45697 * 104.00879 * 118.56924 * 21 19 17 23 23 C 1.33770 * 109.47665 * 359.97438 * 22 21 19 24 24 O 1.21519 * 123.06643 * 179.97438 * 23 22 21 25 25 N 1.33999 * 113.85643 * 0.02562 * 23 22 21 26 26 C 1.48259 * 104.46724 * 39.16864 * 16 15 14 27 27 C 1.47034 * 120.67960 * 27.35724 * 9 7 2 28 28 H 0.96992 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.56735 * 114.17846 * 10 9 7 30 30 H 1.08994 * 109.57189 * 353.82361 * 10 9 7 31 31 H 1.08999 * 109.50074 * 184.98813 * 11 10 9 32 32 H 1.08993 * 109.50341 * 64.86848 * 11 10 9 33 33 H 1.09002 * 109.44893 * 300.45957 * 12 11 10 34 34 H 1.09000 * 109.42300 * 180.52806 * 12 11 10 35 35 H 1.08996 * 110.37470 * 237.88828 * 14 13 12 36 36 H 1.08996 * 110.37218 * 0.12256 * 14 13 12 37 37 H 1.09002 * 110.40473 * 95.04304 * 15 14 13 38 38 H 1.08995 * 110.40561 * 217.46341 * 15 14 13 39 39 H 1.08998 * 110.51987 * 237.19975 * 21 19 17 40 40 H 1.09008 * 110.52275 * 359.93841 * 21 19 17 41 41 H 0.97005 * 125.55649 * 179.97438 * 25 23 22 42 42 H 1.09002 * 110.42468 * 202.15492 * 26 16 15 43 43 H 1.09006 * 110.42546 * 79.67666 * 26 16 15 44 44 H 1.08997 * 109.58226 * 7.45793 * 27 9 7 45 45 H 1.09002 * 109.57917 * 247.05061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2233 0.2769 9 7 1.3718 -2.3613 -0.3527 10 6 1.8231 -3.6559 0.1755 11 6 2.0822 -4.6070 -0.9971 12 6 0.8227 -4.6967 -1.8634 13 6 0.4773 -3.3153 -2.4088 14 6 1.6157 -2.7976 -3.3047 15 6 0.9706 -2.6067 -4.6955 16 7 -0.2002 -3.5179 -4.6916 17 6 -0.6530 -4.2835 -5.7041 18 8 -1.6303 -4.9836 -5.5450 19 6 0.0555 -4.2696 -7.0343 20 1 0.3852 -3.2603 -7.2806 21 6 1.2486 -5.2446 -7.0223 22 8 0.9243 -6.2116 -8.0627 23 6 -0.2518 -5.8943 -8.6156 24 8 -0.7583 -6.5391 -9.5125 25 7 -0.8196 -4.7999 -8.0909 26 6 -0.7580 -3.3983 -3.3232 27 6 0.2205 -2.3357 -1.2668 28 1 -0.4850 0.8400 -0.0004 29 1 1.0522 -4.0751 0.8220 30 1 2.7429 -3.5178 0.7436 31 1 2.3321 -5.5966 -0.6146 32 1 2.9100 -4.2283 -1.5967 33 1 -0.0067 -5.0668 -1.2607 34 1 1.0015 -5.3803 -2.6934 35 1 1.9930 -1.8471 -2.9276 36 1 2.4206 -3.5306 -3.3571 37 1 0.6474 -1.5739 -4.8260 38 1 1.6713 -2.8886 -5.4814 39 1 2.1732 -4.7200 -7.2630 40 1 1.3291 -5.7381 -6.0536 41 1 -1.6692 -4.4193 -8.3636 42 1 -1.3547 -4.2768 -3.0775 43 1 -1.3583 -2.4928 -3.2348 44 1 0.0956 -1.3303 -1.6690 45 1 -0.6802 -2.6303 -0.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040187281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:16 Heat of formation + Delta-G solvation = -72.305169 kcal Electronic energy + Delta-G solvation = -28893.116956 eV Core-core repulsion = 24911.753975 eV Total energy + Delta-G solvation = -3981.362981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08696 -40.18999 -38.56358 -37.35482 -35.99840 -34.95854 -33.22366 -31.69424 -30.17340 -29.96754 -29.41532 -26.26379 -25.43383 -24.33613 -23.07369 -22.69481 -22.30367 -20.81059 -19.76596 -18.51660 -18.43714 -17.75402 -17.02555 -16.65452 -16.51890 -15.95420 -15.36382 -14.90891 -14.73639 -14.58870 -14.51688 -14.15275 -13.97029 -13.77021 -13.52592 -13.17654 -13.03192 -12.77138 -12.46507 -12.42612 -12.11923 -11.73710 -11.23821 -11.16644 -11.12456 -10.99216 -10.91651 -10.80688 -10.57503 -10.45161 -10.25115 -10.23532 -9.91700 -9.75521 -9.55006 -9.48593 -8.77146 -8.59632 -6.78933 -5.90948 -3.32364 2.13061 2.23782 2.44314 2.72448 3.23815 3.26957 3.36933 3.37864 3.68277 3.98105 4.24767 4.38429 4.61390 4.74813 4.76858 4.91052 5.00127 5.08155 5.23077 5.38300 5.41506 5.47574 5.53881 5.65198 5.86262 5.91371 5.92547 6.07906 6.13302 6.15674 6.33892 6.39003 6.40870 6.54890 6.67327 6.72078 6.80038 6.87643 6.90963 7.18646 7.38256 7.48097 7.69082 7.74680 7.88119 8.31947 9.09189 9.72492 10.29776 11.17550 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.003271 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.284188 B = 8558.554021 C = 8971.570405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.093 4.093 13 C -0.093 4.093 14 C -0.113 4.113 15 C 0.092 3.908 16 N -0.612 5.612 17 C 0.519 3.481 18 O -0.527 6.527 19 C 0.079 3.921 20 H 0.126 0.874 21 C 0.056 3.944 22 O -0.323 6.323 23 C 0.652 3.348 24 O -0.520 6.520 25 N -0.710 5.710 26 C 0.116 3.884 27 C 0.188 3.812 28 H 0.254 0.746 29 H 0.017 0.983 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.440 0.560 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -4.810 -11.074 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.174 4.174 12 C -0.131 4.131 13 C -0.096 4.096 14 C -0.152 4.152 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.304 3.696 18 O -0.403 6.403 19 C -0.031 4.031 20 H 0.144 0.856 21 C -0.019 4.019 22 O -0.232 6.232 23 C 0.405 3.595 24 O -0.404 6.404 25 N -0.383 5.383 26 C -0.006 4.006 27 C 0.061 3.939 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.284 0.716 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.087 -5.714 -11.529 13.233 hybrid contribution -0.033 1.339 0.168 1.350 sum 3.054 -4.374 -11.362 12.552 Atomic orbital electron populations 1.70030 1.05203 1.25463 1.53916 1.25015 0.95238 0.98329 1.00973 0.86283 0.79410 0.84091 0.77363 1.20253 1.21570 1.21760 1.19205 0.92695 0.84664 1.41402 0.91584 1.44019 1.35303 1.01410 1.50355 1.20914 0.97515 0.86938 0.92911 1.22052 0.97389 0.98956 0.98959 1.21354 0.98227 0.95277 0.98236 1.21873 0.93036 0.97793 0.96865 1.22516 0.97353 1.03483 0.91799 1.22736 0.86778 0.93826 0.99653 1.49167 1.30552 1.42255 1.12625 1.20006 0.84994 0.80080 0.84480 1.90771 1.26558 1.40889 1.82099 1.22294 0.91244 1.01400 0.88154 0.85641 1.24253 0.97087 0.88253 0.92346 1.87296 1.36177 1.50076 1.49694 1.18405 0.79559 0.80187 0.81383 1.91091 1.63949 1.55020 1.30351 1.45666 1.25658 1.29683 1.37246 1.22509 0.96739 1.02423 0.78912 1.20723 0.88860 0.97093 0.87189 0.93625 0.96552 0.92908 0.93232 0.92158 0.92622 0.93780 0.88541 0.91485 0.90345 0.91001 0.86106 0.87045 0.71605 0.90280 0.90362 0.89076 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 11.18 55.49 0.62 -23.31 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 19.86 29.59 -169.99 -5.03 14.84 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.13 9.59 -15.06 -0.14 -6.28 16 8 H 0.07 1.62 7.89 -52.49 -0.41 1.20 16 9 N -0.59 -12.91 2.78 -172.57 -0.48 -13.39 16 10 C 0.14 2.70 6.50 -3.71 -0.02 2.68 16 11 C -0.13 -2.04 5.87 -26.56 -0.16 -2.19 16 12 C -0.09 -1.38 4.43 -26.93 -0.12 -1.50 16 13 C -0.09 -1.42 0.68 -154.05 -0.11 -1.52 16 14 C -0.11 -1.49 5.57 -25.51 -0.14 -1.63 16 15 C 0.09 0.90 6.76 -2.23 -0.02 0.89 16 16 N -0.61 -7.17 3.32 -169.26 -0.56 -7.73 16 17 C 0.52 6.24 7.02 -10.98 -0.08 6.16 16 18 O -0.53 -8.60 16.87 5.57 0.09 -8.50 16 19 C 0.08 0.66 3.34 -68.19 -0.23 0.43 16 20 H 0.13 0.63 7.59 -51.93 -0.39 0.24 16 21 C 0.06 0.42 7.70 37.73 0.29 0.71 16 22 O -0.32 -3.76 11.09 -37.83 -0.42 -4.18 16 23 C 0.65 8.60 9.16 53.71 0.49 9.09 16 24 O -0.52 -8.77 18.04 -19.12 -0.35 -9.12 16 25 N -0.71 -7.20 5.65 -59.36 -0.34 -7.53 16 26 C 0.12 1.65 6.13 -2.60 -0.02 1.64 16 27 C 0.19 3.80 3.61 -3.94 -0.01 3.79 16 28 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.99 7.93 -51.93 -0.41 0.57 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.53 7.65 -51.93 -0.40 1.13 16 36 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.45 7.11 -51.93 -0.37 0.08 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.11 0.84 7.72 -51.92 -0.40 0.44 16 41 H 0.44 3.88 8.96 -40.82 -0.37 3.52 16 42 H 0.08 1.20 7.59 -51.93 -0.39 0.81 16 43 H 0.08 1.16 7.84 -51.93 -0.41 0.75 16 44 H 0.09 2.08 6.05 -51.93 -0.31 1.76 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -32.14 355.90 -8.08 -40.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.65 Total: 1.09 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.34 Total: 12.26 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.76 Total: -51.97 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.67 Total: -21.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.14 -8.08 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040187281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.082 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds