Wall clock time and date at job start Fri Apr 10 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 299.99983 * 3 2 1 6 6 H 1.48496 * 109.47456 * 59.99958 * 3 2 1 7 7 C 1.38811 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 197.25384 * 7 2 1 9 9 N 1.36940 * 120.00112 * 17.24851 * 7 2 1 10 10 C 1.46921 * 120.67738 * 207.37470 * 9 7 2 11 11 C 1.53195 * 108.89606 * 234.00133 * 10 9 7 12 12 C 1.53135 * 109.28295 * 304.92740 * 11 10 9 13 13 C 1.52483 * 109.60394 * 60.50456 * 12 11 10 14 14 C 1.53835 * 110.21969 * 62.00551 * 13 12 11 15 15 C 1.54501 * 104.88330 * 119.00456 * 14 13 12 16 16 N 1.48361 * 104.55121 * 336.32958 * 15 14 13 17 17 C 1.34777 * 127.73647 * 219.27007 * 16 15 14 18 18 O 1.21270 * 120.00535 * 179.87449 * 17 16 15 19 19 C 1.50708 * 119.99179 * 359.87496 * 17 16 15 20 20 H 1.08999 * 110.50413 * 321.28539 * 19 17 16 21 21 C 1.54091 * 110.56402 * 84.19276 * 19 17 16 22 22 O 1.45697 * 104.00879 * 118.56924 * 21 19 17 23 23 C 1.33770 * 109.47665 * 359.97438 * 22 21 19 24 24 O 1.21519 * 123.06643 * 179.97438 * 23 22 21 25 25 N 1.33999 * 113.85643 * 0.02562 * 23 22 21 26 26 C 1.48259 * 104.46724 * 39.16864 * 16 15 14 27 27 C 1.47034 * 120.67960 * 27.35724 * 9 7 2 28 28 H 0.96992 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.56735 * 114.17846 * 10 9 7 30 30 H 1.08994 * 109.57189 * 353.82361 * 10 9 7 31 31 H 1.08999 * 109.50074 * 184.98813 * 11 10 9 32 32 H 1.08993 * 109.50341 * 64.86848 * 11 10 9 33 33 H 1.09002 * 109.44893 * 300.45957 * 12 11 10 34 34 H 1.09000 * 109.42300 * 180.52806 * 12 11 10 35 35 H 1.08996 * 110.37470 * 237.88828 * 14 13 12 36 36 H 1.08996 * 110.37218 * 0.12256 * 14 13 12 37 37 H 1.09002 * 110.40473 * 95.04304 * 15 14 13 38 38 H 1.08995 * 110.40561 * 217.46341 * 15 14 13 39 39 H 1.08998 * 110.51987 * 237.19975 * 21 19 17 40 40 H 1.09008 * 110.52275 * 359.93841 * 21 19 17 41 41 H 0.97005 * 125.55649 * 179.97438 * 25 23 22 42 42 H 1.09002 * 110.42468 * 202.15492 * 26 16 15 43 43 H 1.09006 * 110.42546 * 79.67666 * 26 16 15 44 44 H 1.08997 * 109.58226 * 7.45793 * 27 9 7 45 45 H 1.09002 * 109.57917 * 247.05061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2233 0.2769 9 7 1.3718 -2.3613 -0.3527 10 6 1.8231 -3.6559 0.1755 11 6 2.0822 -4.6070 -0.9971 12 6 0.8227 -4.6967 -1.8634 13 6 0.4773 -3.3153 -2.4088 14 6 1.6157 -2.7976 -3.3047 15 6 0.9706 -2.6067 -4.6955 16 7 -0.2002 -3.5179 -4.6916 17 6 -0.6530 -4.2835 -5.7041 18 8 -1.6303 -4.9836 -5.5450 19 6 0.0555 -4.2696 -7.0343 20 1 0.3852 -3.2603 -7.2806 21 6 1.2486 -5.2446 -7.0223 22 8 0.9243 -6.2116 -8.0627 23 6 -0.2518 -5.8943 -8.6156 24 8 -0.7583 -6.5391 -9.5125 25 7 -0.8196 -4.7999 -8.0909 26 6 -0.7580 -3.3983 -3.3232 27 6 0.2205 -2.3357 -1.2668 28 1 -0.4850 0.8400 -0.0004 29 1 1.0522 -4.0751 0.8220 30 1 2.7429 -3.5178 0.7436 31 1 2.3321 -5.5966 -0.6146 32 1 2.9100 -4.2283 -1.5967 33 1 -0.0067 -5.0668 -1.2607 34 1 1.0015 -5.3803 -2.6934 35 1 1.9930 -1.8471 -2.9276 36 1 2.4206 -3.5306 -3.3571 37 1 0.6474 -1.5739 -4.8260 38 1 1.6713 -2.8886 -5.4814 39 1 2.1732 -4.7200 -7.2630 40 1 1.3291 -5.7381 -6.0536 41 1 -1.6692 -4.4193 -8.3636 42 1 -1.3547 -4.2768 -3.0775 43 1 -1.3583 -2.4928 -3.2348 44 1 0.0956 -1.3303 -1.6690 45 1 -0.6802 -2.6303 -0.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040187281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:15 Heat of formation + Delta-G solvation = -96.121254 kcal Electronic energy + Delta-G solvation = -28894.149699 eV Core-core repulsion = 24911.753975 eV Total energy + Delta-G solvation = -3982.395724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.92272 -41.29543 -39.74879 -38.36439 -37.31778 -35.79560 -34.83398 -32.98344 -31.74964 -30.86960 -30.46953 -27.40644 -27.14563 -25.26695 -24.03214 -23.88832 -23.56797 -22.19081 -20.73721 -19.69111 -19.28333 -18.86120 -18.31858 -17.86700 -17.49288 -17.05484 -16.55996 -16.35873 -15.76262 -15.69742 -15.54167 -15.32198 -15.15817 -14.91483 -14.67584 -14.38720 -14.36127 -14.11041 -13.58309 -13.44596 -13.32112 -13.00124 -12.87190 -12.65595 -12.43428 -12.22350 -12.06929 -12.04944 -11.95410 -11.78952 -11.66464 -11.52039 -11.29214 -11.11573 -11.00028 -10.48674 -10.40075 -9.80059 -8.61492 -7.81557 -5.25313 1.22961 1.34470 1.49982 1.54600 1.59908 1.63085 1.82290 2.52201 2.56496 3.03895 3.15770 3.32775 3.59505 3.71813 3.81326 3.87422 3.98382 4.03471 4.29826 4.34503 4.38046 4.41553 4.45669 4.56839 4.62629 4.67724 4.75259 4.88480 4.89365 4.95518 5.06095 5.17664 5.23808 5.34379 5.37815 5.46218 5.56133 5.61268 5.67668 5.74442 5.81690 6.04419 6.44386 6.46434 6.83516 6.95004 7.21140 7.92151 8.44741 9.24665 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.003271 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.284188 B = 8558.554021 C = 8971.570405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.303 1.303 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.137 3.863 11 C -0.121 4.121 12 C -0.089 4.089 13 C -0.085 4.085 14 C -0.109 4.109 15 C 0.098 3.902 16 N -0.605 5.605 17 C 0.520 3.480 18 O -0.577 6.577 19 C 0.087 3.913 20 H 0.175 0.825 21 C 0.052 3.948 22 O -0.336 6.336 23 C 0.650 3.350 24 O -0.570 6.570 25 N -0.702 5.702 26 C 0.121 3.879 27 C 0.201 3.799 28 H 0.248 0.752 29 H 0.002 0.998 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.173 0.827 40 H 0.113 0.887 41 H 0.444 0.556 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -4.825 -12.919 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.231 1.231 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.011 3.989 11 C -0.159 4.159 12 C -0.127 4.127 13 C -0.087 4.087 14 C -0.148 4.148 15 C -0.024 4.024 16 N -0.338 5.338 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.022 4.022 20 H 0.192 0.808 21 C -0.022 4.022 22 O -0.245 6.245 23 C 0.403 3.597 24 O -0.458 6.458 25 N -0.374 5.374 26 C -0.003 4.003 27 C 0.075 3.925 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.190 0.810 40 H 0.131 0.869 41 H 0.289 0.711 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.080 0.920 45 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges 5.946 -5.718 -13.360 15.702 hybrid contribution -0.920 1.331 0.922 1.862 sum 5.026 -4.387 -12.438 14.115 Atomic orbital electron populations 1.70191 1.06599 1.25557 1.55851 1.25665 0.95806 1.01083 1.01627 0.85328 0.78841 0.80430 0.76558 1.18965 1.21400 1.23056 1.19476 0.92804 0.85674 1.40045 0.91521 1.44269 1.35334 1.01942 1.51069 1.21075 0.96811 0.86447 0.94537 1.21910 0.97694 0.98996 0.97332 1.21326 0.97607 0.95046 0.98733 1.21607 0.94754 0.96833 0.95556 1.22416 0.96948 1.02361 0.93026 1.22871 0.86547 0.93803 0.99140 1.49111 1.30844 1.42438 1.11367 1.20709 0.84385 0.78739 0.85461 1.90765 1.28960 1.42855 1.83030 1.22576 0.90473 1.04163 0.84954 0.80767 1.24759 0.98295 0.87545 0.91635 1.87269 1.35255 1.51490 1.50526 1.18531 0.79876 0.80224 0.81055 1.91045 1.65391 1.56627 1.32701 1.45686 1.25975 1.28736 1.36962 1.22209 0.96097 1.01147 0.80829 1.20440 0.87038 0.96909 0.88152 0.94314 0.98027 0.92937 0.90770 0.91058 0.94119 0.91372 0.91360 0.89448 0.89993 0.85557 0.80975 0.86855 0.71115 0.91678 0.91793 0.91951 1.00209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.56 11.18 21.65 0.24 -51.31 16 2 C -0.05 -2.38 4.92 84.86 0.42 -1.96 16 3 Si 0.96 41.19 29.59 68.60 2.03 43.22 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.25 -12.35 9.59 84.03 0.81 -11.55 16 8 H 0.07 3.24 7.89 -2.91 -0.02 3.22 16 9 N -0.60 -26.90 2.78 -699.90 -1.95 -28.85 16 10 C 0.14 5.12 6.50 86.36 0.56 5.68 16 11 C -0.12 -3.36 5.87 30.70 0.18 -3.18 16 12 C -0.09 -2.49 4.43 30.47 0.13 -2.35 16 13 C -0.08 -2.53 0.68 -51.88 -0.04 -2.56 16 14 C -0.11 -2.54 5.57 31.39 0.17 -2.37 16 15 C 0.10 1.47 6.76 86.53 0.58 2.05 16 16 N -0.61 -12.41 3.32 -807.80 -2.69 -15.10 16 17 C 0.52 10.96 7.02 87.66 0.62 11.58 16 18 O -0.58 -18.21 16.87 -3.00 -0.05 -18.26 16 19 C 0.09 1.05 3.34 44.50 0.15 1.20 16 20 H 0.18 0.52 7.59 -2.39 -0.02 0.50 16 21 C 0.05 0.50 7.70 72.35 0.56 1.06 16 22 O -0.34 -6.83 11.09 -47.30 -0.52 -7.36 16 23 C 0.65 16.06 9.16 129.91 1.19 17.25 16 24 O -0.57 -19.17 18.04 19.62 0.35 -18.82 16 25 N -0.70 -12.45 5.65 -573.42 -3.24 -15.70 16 26 C 0.12 3.40 6.13 86.35 0.53 3.93 16 27 C 0.20 8.45 3.61 86.16 0.31 8.76 16 28 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.87 6.61 -2.39 -0.02 1.85 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.04 7.65 -2.39 -0.02 2.02 16 36 H 0.09 1.70 6.52 -2.39 -0.02 1.68 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 0.61 7.11 -2.39 -0.02 0.59 16 39 H 0.17 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.11 1.12 7.72 -2.38 -0.02 1.10 16 41 H 0.44 7.06 8.96 -92.70 -0.83 6.23 16 42 H 0.06 2.02 7.59 -2.39 -0.02 2.00 16 43 H 0.06 1.97 7.84 -2.38 -0.02 1.96 16 44 H 0.06 2.98 6.05 -2.39 -0.01 2.97 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 Total: -1.00 -76.05 355.90 0.54 -75.52 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.19 Total: 9.12 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 6.18 Total: 27.54 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -7.63 Total: -110.96 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.22 Total: -44.44 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -76.05 0.54 -75.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040187281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.603 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds