Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47011 * 239.99907 * 3 2 1 5 5 H 1.48505 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46865 * 119.99763 * 3 2 1 7 7 C 1.38811 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99362 * 162.43718 * 7 2 1 9 9 N 1.36933 * 120.00186 * 342.72051 * 7 2 1 10 10 C 1.46932 * 120.67081 * 332.07087 * 9 7 2 11 11 C 1.52756 * 109.08240 * 234.05849 * 10 9 7 12 12 C 1.53117 * 109.36677 * 305.08786 * 11 10 9 13 13 C 1.52479 * 109.65927 * 60.36233 * 12 11 10 14 14 C 1.53835 * 110.21942 * 178.08602 * 13 12 11 15 15 C 1.54494 * 104.79644 * 240.96676 * 14 13 12 16 16 N 1.48187 * 104.63246 * 23.80008 * 15 14 13 17 17 C 1.34773 * 127.80019 * 140.72630 * 16 15 14 18 18 O 1.21285 * 119.99905 * 179.97438 * 17 16 15 19 19 C 1.50701 * 120.00493 * 359.96583 * 17 16 15 20 20 H 1.09002 * 110.49761 * 38.71737 * 19 17 16 21 21 C 1.54083 * 110.56894 * 275.81852 * 19 17 16 22 22 O 1.45700 * 104.00969 * 241.42437 * 21 19 17 23 23 C 1.33771 * 109.47642 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.07511 * 179.97438 * 23 22 21 25 25 N 1.33999 * 113.85622 * 0.02562 * 23 22 21 26 26 C 1.48249 * 104.39465 * 320.69879 * 16 15 14 27 27 C 1.47025 * 120.67716 * 152.36185 * 9 7 2 28 28 H 0.96998 * 120.00569 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58069 * 353.92012 * 10 9 7 30 30 H 1.09007 * 109.56931 * 114.30166 * 10 9 7 31 31 H 1.09000 * 109.56317 * 185.05750 * 11 10 9 32 32 H 1.08999 * 109.39296 * 65.01363 * 11 10 9 33 33 H 1.09005 * 109.44126 * 300.30751 * 12 11 10 34 34 H 1.09002 * 109.41188 * 180.40472 * 12 11 10 35 35 H 1.09003 * 110.37087 * 359.79832 * 14 13 12 36 36 H 1.09002 * 110.37243 * 122.02234 * 14 13 12 37 37 H 1.09006 * 110.40627 * 142.58509 * 15 14 13 38 38 H 1.09005 * 110.40860 * 264.89392 * 15 14 13 39 39 H 1.09005 * 110.51853 * 0.05134 * 21 19 17 40 40 H 1.08993 * 110.52633 * 122.79217 * 21 19 17 41 41 H 0.97003 * 125.56270 * 179.97438 * 25 23 22 42 42 H 1.08999 * 110.43026 * 280.39370 * 26 16 15 43 43 H 1.09004 * 110.42775 * 157.91949 * 26 16 15 44 44 H 1.09001 * 109.57020 * 247.04948 * 27 9 7 45 45 H 1.08995 * 109.57127 * 7.42736 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0525 -1.2239 -0.2817 9 7 1.3720 -2.3611 0.3533 10 6 0.2297 -2.3364 1.2771 11 6 0.5020 -3.2964 2.4337 12 6 0.8166 -4.6872 1.8759 13 6 2.0519 -4.6151 0.9849 14 6 2.4080 -6.0149 0.4554 15 6 3.8260 -6.2943 1.0012 16 7 3.9440 -5.4279 2.1977 17 6 4.5291 -5.7217 3.3758 18 8 4.5449 -4.8990 4.2668 19 6 5.1635 -7.0723 3.5861 20 1 5.6738 -7.3996 2.6802 21 6 4.1057 -8.1059 4.0186 22 8 4.5512 -8.5358 5.3375 23 6 5.6765 -7.8888 5.6610 24 8 6.2614 -8.0607 6.7121 25 7 6.0991 -7.0331 4.7204 26 6 3.2737 -4.1650 1.8058 27 6 1.8197 -3.6562 -0.1797 28 1 -0.4851 0.8400 0.0004 29 1 0.0961 -1.3270 1.6659 30 1 -0.6722 -2.6494 0.7510 31 1 -0.3767 -3.3523 3.0763 32 1 1.3528 -2.9350 3.0114 33 1 -0.0316 -5.0443 1.2918 34 1 1.0040 -5.3745 2.7009 35 1 1.7028 -6.7546 0.8345 36 1 2.4114 -6.0187 -0.6346 37 1 3.9260 -7.3432 1.2803 38 1 4.5785 -6.0257 0.2597 39 1 3.1212 -7.6420 4.0803 40 1 4.0895 -8.9484 3.3273 41 1 6.8926 -6.4782 4.7782 42 1 3.9389 -3.5550 1.1946 43 1 2.9554 -3.6130 2.6902 44 1 1.0546 -4.0631 -0.8408 45 1 2.7492 -3.5217 -0.7329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040187282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -70.393224 kcal Electronic energy + Delta-G solvation = -28844.951271 eV Core-core repulsion = 24863.671198 eV Total energy + Delta-G solvation = -3981.280073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.11446 -40.28782 -38.57015 -37.37211 -36.03093 -34.97896 -33.22159 -31.53500 -30.58133 -30.18020 -28.97117 -26.41968 -25.39377 -24.36423 -23.34560 -22.71932 -22.22119 -20.65285 -19.90260 -18.52528 -18.29186 -17.92387 -17.12188 -16.76622 -16.52209 -15.89507 -15.42085 -14.94456 -14.75458 -14.60846 -14.55501 -14.15377 -13.93771 -13.87473 -13.57092 -13.21239 -12.93550 -12.76058 -12.66785 -12.38830 -12.08020 -11.74361 -11.36311 -11.22842 -11.13188 -11.00942 -10.96510 -10.71538 -10.60489 -10.55797 -10.36191 -10.18598 -9.93151 -9.60417 -9.55300 -9.48076 -8.81873 -8.50615 -6.74406 -5.84666 -3.27655 2.11151 2.21676 2.42651 2.69879 3.20881 3.34739 3.41436 3.42930 3.64544 3.92863 4.19270 4.42724 4.54208 4.57296 4.68499 4.78694 4.90546 4.96000 5.20238 5.27408 5.31647 5.38472 5.56779 5.65455 5.78542 5.86335 5.90210 6.00557 6.04602 6.11556 6.32350 6.38997 6.44771 6.50963 6.61306 6.71482 6.76389 6.82291 6.85435 7.33928 7.36201 7.61408 7.73192 7.73235 7.87468 8.38050 9.14504 9.77774 10.33762 11.23490 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003251 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.282264 B = 8610.510450 C = 9090.323295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.126 4.126 15 C 0.096 3.904 16 N -0.617 5.617 17 C 0.518 3.482 18 O -0.520 6.520 19 C 0.080 3.920 20 H 0.125 0.875 21 C 0.056 3.944 22 O -0.322 6.322 23 C 0.652 3.348 24 O -0.519 6.519 25 N -0.710 5.710 26 C 0.125 3.875 27 C 0.162 3.838 28 H 0.255 0.745 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.441 0.559 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.023 0.977 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -17.557 -0.049 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.187 4.187 12 C -0.129 4.129 13 C -0.089 4.089 14 C -0.165 4.165 15 C -0.027 4.027 16 N -0.351 5.351 17 C 0.303 3.697 18 O -0.395 6.395 19 C -0.031 4.031 20 H 0.143 0.857 21 C -0.020 4.020 22 O -0.232 6.232 23 C 0.405 3.595 24 O -0.403 6.403 25 N -0.383 5.383 26 C 0.005 3.995 27 C 0.035 3.965 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.284 0.716 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.673 -17.330 1.213 18.610 hybrid contribution 0.685 1.289 -0.329 1.497 sum 7.358 -16.041 0.884 17.670 Atomic orbital electron populations 1.70019 1.05280 1.25706 1.53413 1.25012 0.95229 0.98394 1.00694 0.86411 0.78995 0.83444 0.78164 1.20890 1.21616 1.20963 1.19082 0.92618 0.84827 1.42007 0.91775 1.44032 1.35969 1.01080 1.50093 1.20689 0.88513 0.98542 0.87807 1.22217 1.00301 0.96037 1.00110 1.21340 0.96361 0.97664 0.97553 1.21675 0.94754 0.94602 0.97852 1.22587 0.94951 0.97489 1.01466 1.22544 0.98739 0.94238 0.87139 1.49180 1.55679 1.18195 1.12068 1.20011 0.79480 0.88661 0.81529 1.90806 1.58063 1.49284 1.41323 1.22294 0.92319 0.95181 0.93286 0.85745 1.24242 0.98265 0.97246 0.82197 1.87299 1.39338 1.61398 1.35194 1.18399 0.79537 0.77916 0.83683 1.91093 1.57358 1.68545 1.23276 1.45673 1.29084 1.45550 1.17971 1.22533 0.92735 0.84347 0.99933 1.20868 0.97825 0.86560 0.91293 0.93532 0.89516 0.96508 0.93198 0.92493 0.92376 0.93840 0.90947 0.89859 0.90864 0.90426 0.87057 0.86199 0.71561 0.90445 0.89232 0.95953 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 11.19 55.49 0.62 -24.62 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.58 9.59 -15.06 -0.14 -6.72 16 8 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 9 N -0.59 -13.44 2.83 -172.84 -0.49 -13.93 16 10 C 0.17 3.82 5.28 -3.93 -0.02 3.80 16 11 C -0.15 -2.68 5.86 -26.80 -0.16 -2.83 16 12 C -0.09 -1.36 4.48 -26.94 -0.12 -1.48 16 13 C -0.09 -1.20 0.68 -154.05 -0.11 -1.30 16 14 C -0.13 -1.16 6.29 -25.51 -0.16 -1.32 16 15 C 0.10 0.70 6.75 -2.33 -0.02 0.69 16 16 N -0.62 -6.89 3.32 -169.40 -0.56 -7.45 16 17 C 0.52 6.20 7.02 -10.99 -0.08 6.12 16 18 O -0.52 -8.84 16.87 5.55 0.09 -8.75 16 19 C 0.08 0.62 3.34 -68.19 -0.23 0.39 16 20 H 0.12 0.50 7.59 -51.93 -0.39 0.11 16 21 C 0.06 0.38 7.71 37.72 0.29 0.67 16 22 O -0.32 -3.65 11.09 -37.83 -0.42 -4.07 16 23 C 0.65 8.49 9.16 53.71 0.49 8.98 16 24 O -0.52 -8.73 18.04 -19.12 -0.34 -9.07 16 25 N -0.71 -7.07 5.66 -59.36 -0.34 -7.41 16 26 C 0.13 1.86 5.79 -2.60 -0.02 1.85 16 27 C 0.16 2.88 4.90 -3.94 -0.02 2.86 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.09 2.24 6.03 -51.93 -0.31 1.93 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 36 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 37 H 0.07 0.28 7.11 -51.93 -0.37 -0.09 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.78 7.72 -51.93 -0.40 0.37 16 40 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.44 3.86 8.96 -40.82 -0.37 3.50 16 42 H 0.08 1.25 7.73 -51.93 -0.40 0.84 16 43 H 0.09 1.62 5.64 -51.93 -0.29 1.33 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -34.32 355.00 -8.05 -42.37 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.57 Total: -0.27 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -0.37 Total: 11.76 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.77 Total: -53.40 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.67 Total: -21.89 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.32 -8.05 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040187282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds