Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47011 * 239.99907 * 3 2 1 5 5 H 1.48505 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46865 * 119.99763 * 3 2 1 7 7 C 1.38811 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99362 * 162.43718 * 7 2 1 9 9 N 1.36933 * 120.00186 * 342.72051 * 7 2 1 10 10 C 1.46932 * 120.67081 * 332.07087 * 9 7 2 11 11 C 1.52756 * 109.08240 * 234.05849 * 10 9 7 12 12 C 1.53117 * 109.36677 * 305.08786 * 11 10 9 13 13 C 1.52479 * 109.65927 * 60.36233 * 12 11 10 14 14 C 1.53835 * 110.21942 * 178.08602 * 13 12 11 15 15 C 1.54494 * 104.79644 * 240.96676 * 14 13 12 16 16 N 1.48187 * 104.63246 * 23.80008 * 15 14 13 17 17 C 1.34773 * 127.80019 * 140.72630 * 16 15 14 18 18 O 1.21285 * 119.99905 * 179.97438 * 17 16 15 19 19 C 1.50701 * 120.00493 * 359.96583 * 17 16 15 20 20 H 1.09002 * 110.49761 * 38.71737 * 19 17 16 21 21 C 1.54083 * 110.56894 * 275.81852 * 19 17 16 22 22 O 1.45700 * 104.00969 * 241.42437 * 21 19 17 23 23 C 1.33771 * 109.47642 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.07511 * 179.97438 * 23 22 21 25 25 N 1.33999 * 113.85622 * 0.02562 * 23 22 21 26 26 C 1.48249 * 104.39465 * 320.69879 * 16 15 14 27 27 C 1.47025 * 120.67716 * 152.36185 * 9 7 2 28 28 H 0.96998 * 120.00569 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58069 * 353.92012 * 10 9 7 30 30 H 1.09007 * 109.56931 * 114.30166 * 10 9 7 31 31 H 1.09000 * 109.56317 * 185.05750 * 11 10 9 32 32 H 1.08999 * 109.39296 * 65.01363 * 11 10 9 33 33 H 1.09005 * 109.44126 * 300.30751 * 12 11 10 34 34 H 1.09002 * 109.41188 * 180.40472 * 12 11 10 35 35 H 1.09003 * 110.37087 * 359.79832 * 14 13 12 36 36 H 1.09002 * 110.37243 * 122.02234 * 14 13 12 37 37 H 1.09006 * 110.40627 * 142.58509 * 15 14 13 38 38 H 1.09005 * 110.40860 * 264.89392 * 15 14 13 39 39 H 1.09005 * 110.51853 * 0.05134 * 21 19 17 40 40 H 1.08993 * 110.52633 * 122.79217 * 21 19 17 41 41 H 0.97003 * 125.56270 * 179.97438 * 25 23 22 42 42 H 1.08999 * 110.43026 * 280.39370 * 26 16 15 43 43 H 1.09004 * 110.42775 * 157.91949 * 26 16 15 44 44 H 1.09001 * 109.57020 * 247.04948 * 27 9 7 45 45 H 1.08995 * 109.57127 * 7.42736 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0525 -1.2239 -0.2817 9 7 1.3720 -2.3611 0.3533 10 6 0.2297 -2.3364 1.2771 11 6 0.5020 -3.2964 2.4337 12 6 0.8166 -4.6872 1.8759 13 6 2.0519 -4.6151 0.9849 14 6 2.4080 -6.0149 0.4554 15 6 3.8260 -6.2943 1.0012 16 7 3.9440 -5.4279 2.1977 17 6 4.5291 -5.7217 3.3758 18 8 4.5449 -4.8990 4.2668 19 6 5.1635 -7.0723 3.5861 20 1 5.6738 -7.3996 2.6802 21 6 4.1057 -8.1059 4.0186 22 8 4.5512 -8.5358 5.3375 23 6 5.6765 -7.8888 5.6610 24 8 6.2614 -8.0607 6.7121 25 7 6.0991 -7.0331 4.7204 26 6 3.2737 -4.1650 1.8058 27 6 1.8197 -3.6562 -0.1797 28 1 -0.4851 0.8400 0.0004 29 1 0.0961 -1.3270 1.6659 30 1 -0.6722 -2.6494 0.7510 31 1 -0.3767 -3.3523 3.0763 32 1 1.3528 -2.9350 3.0114 33 1 -0.0316 -5.0443 1.2918 34 1 1.0040 -5.3745 2.7009 35 1 1.7028 -6.7546 0.8345 36 1 2.4114 -6.0187 -0.6346 37 1 3.9260 -7.3432 1.2803 38 1 4.5785 -6.0257 0.2597 39 1 3.1212 -7.6420 4.0803 40 1 4.0895 -8.9484 3.3273 41 1 6.8926 -6.4782 4.7782 42 1 3.9389 -3.5550 1.1946 43 1 2.9554 -3.6130 2.6902 44 1 1.0546 -4.0631 -0.8408 45 1 2.7492 -3.5217 -0.7329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040187282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -97.203650 kcal Electronic energy + Delta-G solvation = -28846.113858 eV Core-core repulsion = 24863.671198 eV Total energy + Delta-G solvation = -3982.442660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.91910 -41.32540 -39.72548 -38.36595 -37.38164 -35.79189 -34.81089 -32.78655 -32.32631 -30.96800 -29.98289 -27.49785 -27.18897 -25.25206 -24.28353 -23.83597 -23.57167 -22.07120 -20.75706 -19.54189 -19.28123 -18.81106 -18.56900 -17.95818 -17.47154 -16.92253 -16.76355 -16.39000 -15.76744 -15.63115 -15.46687 -15.44019 -15.30073 -14.75408 -14.62453 -14.49487 -14.36531 -14.04595 -13.69028 -13.45338 -13.10815 -13.06414 -12.87700 -12.75114 -12.41810 -12.33178 -12.07745 -12.03626 -11.95414 -11.93831 -11.76824 -11.52668 -11.42122 -11.06994 -10.97957 -10.50006 -10.38774 -9.76907 -8.64562 -7.86516 -5.30085 1.24337 1.35960 1.43862 1.47742 1.52687 1.61131 1.84964 2.50209 2.53806 3.05428 3.19211 3.28755 3.60236 3.72133 3.77251 3.88185 3.91414 4.01428 4.31957 4.36662 4.39287 4.40576 4.46639 4.53233 4.63875 4.73541 4.81046 4.88278 4.93469 4.98099 5.10866 5.13098 5.17932 5.23770 5.37794 5.44900 5.54788 5.59611 5.60840 5.66620 5.78216 6.04846 6.39837 6.51071 6.84490 6.98543 7.16273 7.89139 8.39622 9.19161 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.003251 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.282264 B = 8610.510450 C = 9090.323295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.607 5.607 10 C 0.179 3.821 11 C -0.139 4.139 12 C -0.085 4.085 13 C -0.079 4.079 14 C -0.119 4.119 15 C 0.094 3.906 16 N -0.610 5.610 17 C 0.514 3.486 18 O -0.584 6.584 19 C 0.090 3.910 20 H 0.181 0.819 21 C 0.052 3.948 22 O -0.337 6.337 23 C 0.650 3.350 24 O -0.571 6.571 25 N -0.704 5.704 26 C 0.129 3.871 27 C 0.159 3.841 28 H 0.248 0.752 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.178 0.822 41 H 0.444 0.556 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 -21.316 -1.792 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.178 4.178 12 C -0.122 4.122 13 C -0.081 4.081 14 C -0.157 4.157 15 C -0.027 4.027 16 N -0.343 5.343 17 C 0.302 3.698 18 O -0.463 6.463 19 C -0.019 4.019 20 H 0.198 0.802 21 C -0.022 4.022 22 O -0.246 6.246 23 C 0.403 3.597 24 O -0.459 6.459 25 N -0.375 5.375 26 C 0.007 3.993 27 C 0.034 3.966 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.195 0.805 41 H 0.288 0.712 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.042 0.958 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.835 -21.141 -0.605 22.555 hybrid contribution 0.278 2.488 0.148 2.508 sum 8.113 -18.653 -0.457 20.346 Atomic orbital electron populations 1.70162 1.06532 1.25657 1.55606 1.25677 0.95891 1.01186 1.01752 0.85506 0.77716 0.80066 0.78185 1.19737 1.22272 1.21252 1.19420 0.92881 0.86151 1.40088 0.91525 1.44260 1.35778 1.02338 1.50671 1.20427 0.88080 0.97301 0.88922 1.22052 0.99993 0.97405 0.98334 1.21303 0.97180 0.95320 0.98401 1.21490 0.93832 0.96891 0.95922 1.22598 0.96707 0.93993 1.02419 1.22911 0.97774 0.96386 0.85594 1.49174 1.54606 1.17312 1.13162 1.20847 0.78631 0.89737 0.80634 1.90792 1.60361 1.51686 1.43459 1.22612 0.92344 0.92490 0.94471 0.80183 1.24789 0.97458 0.98872 0.81107 1.87268 1.38449 1.61217 1.37704 1.18541 0.79678 0.78138 0.83384 1.91043 1.59097 1.70297 1.25460 1.45714 1.29180 1.44492 1.18133 1.22156 0.93253 0.85936 0.97985 1.21072 0.97632 0.84957 0.92960 0.94311 0.93764 0.98350 0.92184 0.94343 0.91399 0.91704 0.88591 0.88470 0.85458 0.88866 0.87135 0.80453 0.71208 0.92310 0.93368 0.95769 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 11.19 21.65 0.24 -54.46 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.32 16 3 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 7 C -0.25 -13.45 9.59 84.03 0.81 -12.65 16 8 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -28.37 2.83 -700.75 -1.98 -30.35 16 10 C 0.18 8.37 5.28 86.22 0.46 8.83 16 11 C -0.14 -5.14 5.86 30.55 0.18 -4.96 16 12 C -0.08 -2.34 4.48 30.46 0.14 -2.20 16 13 C -0.08 -2.00 0.68 -51.88 -0.04 -2.04 16 14 C -0.12 -1.53 6.29 31.38 0.20 -1.33 16 15 C 0.09 0.77 6.75 86.56 0.58 1.35 16 16 N -0.61 -11.48 3.32 -808.25 -2.68 -14.17 16 17 C 0.51 10.88 7.02 87.66 0.62 11.50 16 18 O -0.58 -19.83 16.87 -3.05 -0.05 -19.89 16 19 C 0.09 0.97 3.34 44.50 0.15 1.12 16 20 H 0.18 0.05 7.59 -2.39 -0.02 0.03 16 21 C 0.05 0.42 7.71 72.35 0.56 0.98 16 22 O -0.34 -6.69 11.09 -47.31 -0.52 -7.21 16 23 C 0.65 16.03 9.16 129.91 1.19 17.22 16 24 O -0.57 -19.39 18.04 19.65 0.35 -19.04 16 25 N -0.70 -12.39 5.66 -573.43 -3.24 -15.63 16 26 C 0.13 3.72 5.79 86.36 0.50 4.22 16 27 C 0.16 5.50 4.90 86.16 0.42 5.92 16 28 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.04 2.43 6.03 -2.39 -0.01 2.42 16 30 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.56 6.21 -2.39 -0.01 1.54 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 0.88 7.70 -2.39 -0.02 0.86 16 36 H 0.10 1.08 7.70 -2.39 -0.02 1.06 16 37 H 0.13 -0.22 7.11 -2.38 -0.02 -0.24 16 38 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.11 0.99 7.72 -2.38 -0.02 0.97 16 40 H 0.18 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.44 7.15 8.96 -92.71 -0.83 6.32 16 42 H 0.06 1.89 7.73 -2.39 -0.02 1.87 16 43 H 0.05 1.80 5.64 -2.38 -0.01 1.78 16 44 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 1.96 7.76 -2.39 -0.02 1.95 16 Total: -1.00 -84.67 355.00 0.50 -84.17 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 0.19 Total: 4.11 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 6.17 Total: 25.66 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -7.67 Total: -114.61 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.22 Total: -46.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -84.67 0.50 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040187282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.034 kcal (2) G-P(sol) polarization free energy of solvation -84.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds