Wall clock time and date at job start Fri Apr 10 2020 18:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.58935 * 2 1 4 4 C 1.53192 * 109.59868 * 120.43793 * 2 1 3 5 5 C 1.53041 * 109.31424 * 65.12678 * 4 2 1 6 6 H 1.09003 * 109.46196 * 301.37306 * 5 4 2 7 7 N 1.46503 * 109.46040 * 181.40240 * 5 4 2 8 8 C 1.36938 * 119.99968 * 154.97595 * 7 5 4 9 9 H 1.07996 * 120.00062 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99529 * 179.97438 * 8 7 5 11 11 N 1.31610 * 120.00514 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99406 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47161 * 59.99863 * 12 10 8 14 14 H 1.48502 * 109.46780 * 299.99918 * 12 10 8 15 15 H 1.48499 * 109.47018 * 179.97438 * 12 10 8 16 16 C 1.53037 * 109.52375 * 61.39016 * 5 4 2 17 17 C 1.53196 * 109.31187 * 298.62305 * 16 5 4 18 18 N 1.46921 * 108.77227 * 54.64030 * 17 16 5 19 19 C 1.34780 * 120.63354 * 126.41275 * 18 17 16 20 20 O 1.21579 * 120.00002 * 176.26427 * 19 18 17 21 21 C 1.47612 * 119.99589 * 356.25930 * 19 18 17 22 22 N 1.33055 * 120.53124 * 39.40358 * 21 19 18 23 23 N 1.28714 * 120.36760 * 179.97438 * 22 21 19 24 24 C 1.32941 * 121.55638 * 0.02562 * 23 22 21 25 25 O 1.35292 * 119.47420 * 179.97438 * 24 23 22 26 26 N 1.32469 * 121.05990 * 0.02562 * 24 23 22 27 27 C 1.32862 * 119.51301 * 359.68428 * 26 24 23 28 28 O 1.35288 * 120.71772 * 180.30108 * 27 26 24 29 29 H 1.08999 * 109.47435 * 180.28452 * 1 2 3 30 30 H 1.09004 * 109.46737 * 300.28504 * 1 2 3 31 31 H 1.09003 * 109.46841 * 60.28096 * 1 2 3 32 32 H 1.09006 * 109.48268 * 305.18529 * 4 2 1 33 33 H 1.08997 * 109.51430 * 185.08966 * 4 2 1 34 34 H 0.96998 * 119.99572 * 334.97054 * 7 5 4 35 35 H 0.97003 * 120.00149 * 359.97438 * 11 10 8 36 36 H 1.08994 * 109.50169 * 58.58236 * 16 5 4 37 37 H 1.09005 * 109.49858 * 178.67903 * 16 5 4 38 38 H 1.09005 * 109.58533 * 174.42425 * 17 16 5 39 39 H 1.08997 * 109.58641 * 294.70609 * 17 16 5 40 40 H 0.96701 * 113.99859 * 89.99893 * 25 24 23 41 41 H 0.96702 * 113.99569 * 270.25666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0439 -0.7311 1.2443 5 6 1.6414 -2.2056 1.1673 6 1 0.5564 -2.2827 1.0963 7 7 2.1022 -2.9009 2.3717 8 6 1.4643 -4.0371 2.7927 9 1 0.6212 -4.4204 2.2372 10 6 1.9014 -4.6961 3.9336 11 7 2.9291 -4.2293 4.6103 12 14 1.0316 -6.2465 4.5075 13 1 1.1092 -7.2801 3.4442 14 1 -0.3923 -5.9377 4.7948 15 1 1.6868 -6.7544 5.7396 16 6 2.2800 -2.8463 -0.0671 17 6 1.7690 -2.1393 -1.3265 18 7 2.0225 -0.6981 -1.1954 19 6 2.6936 -0.0289 -2.1536 20 8 2.8380 1.1752 -2.0666 21 6 3.2534 -0.7579 -3.3087 22 7 2.5730 -1.7511 -3.8754 23 7 3.0639 -2.3843 -4.8827 24 6 4.2539 -2.0734 -5.3872 25 8 4.7297 -2.7672 -6.4468 26 7 4.9819 -1.0958 -4.8685 27 6 4.5134 -0.4103 -3.8313 28 8 5.2337 0.5969 -3.2863 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.6080 -0.2811 2.1363 33 1 3.1300 -0.6524 1.2902 34 1 2.8593 -2.5564 2.8707 35 1 3.3815 -3.4248 4.3117 36 1 3.3638 -2.7475 -0.0088 37 1 2.0121 -3.9021 -0.1087 38 1 2.2943 -2.5247 -2.2004 39 1 0.6990 -2.3159 -1.4360 40 1 4.4846 -2.3930 -7.3041 41 1 5.8296 0.3159 -2.5784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044664635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:54 Heat of formation + Delta-G solvation = -0.417823 kcal Electronic energy + Delta-G solvation = -28008.618848 eV Core-core repulsion = 23926.832793 eV Total energy + Delta-G solvation = -4081.786055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61973 -40.37355 -38.93554 -38.17281 -37.72259 -35.00091 -34.77675 -33.19197 -32.04329 -31.63765 -29.25428 -27.35868 -26.66417 -25.59548 -24.04656 -23.15565 -22.50400 -21.16928 -20.53171 -20.11464 -19.04336 -18.75865 -17.65048 -17.33575 -16.91101 -16.45549 -16.09569 -15.27427 -14.83104 -14.70474 -14.35277 -14.27176 -13.76005 -13.67415 -13.44675 -13.32686 -13.23534 -12.96090 -12.73922 -12.64066 -12.17983 -12.04994 -11.92987 -11.58051 -11.37469 -10.99186 -10.88594 -10.62508 -10.55136 -10.50531 -10.23140 -10.03847 -9.95760 -9.82822 -9.21766 -8.95654 -8.72478 -7.10644 -6.15023 -3.15851 -0.43600 -0.20202 1.94793 2.15872 2.35629 2.57518 2.84610 3.29661 3.49041 3.51959 3.69517 3.85850 4.02305 4.39698 4.61409 4.76452 4.91673 5.05308 5.09664 5.20637 5.33225 5.54271 5.56799 5.63730 5.69501 5.76505 5.91485 5.92984 6.06017 6.12729 6.20801 6.28637 6.32798 6.42490 6.60133 6.63381 6.73533 6.88362 7.16880 7.60442 7.75523 7.79919 8.70377 9.16398 10.02966 10.17497 11.33109 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003374 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.746080 B = 8297.301406 C = 9167.427172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.100 0.900 4 C -0.135 4.135 5 C 0.183 3.817 6 H 0.056 0.944 7 N -0.735 5.735 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.078 2.922 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.152 4.152 17 C 0.100 3.900 18 N -0.577 5.577 19 C 0.579 3.421 20 O -0.514 6.514 21 C -0.044 4.044 22 N -0.104 5.104 23 N -0.284 5.284 24 C 0.479 3.521 25 O -0.446 6.446 26 N -0.507 5.507 27 C 0.417 3.583 28 O -0.445 6.445 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.422 0.578 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 8.353 -19.262 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.118 0.882 4 C -0.174 4.174 5 C 0.073 3.927 6 H 0.073 0.927 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.909 3.091 13 H -0.223 1.223 14 H -0.222 1.222 15 H -0.211 1.211 16 C -0.193 4.193 17 C -0.024 4.024 18 N -0.309 5.309 19 C 0.361 3.639 20 O -0.388 6.388 21 C -0.197 4.197 22 N 0.037 4.963 23 N -0.146 5.146 24 C 0.174 3.826 25 O -0.248 6.248 26 N -0.250 5.250 27 C 0.219 3.781 28 O -0.253 6.253 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.199 0.801 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.284 0.716 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 0.373 6.909 -18.629 19.872 hybrid contribution 1.042 1.731 -1.034 2.269 sum 1.416 8.640 -19.663 21.524 Atomic orbital electron populations 1.22154 0.94352 1.03167 1.02276 1.21327 0.94619 0.97002 0.83006 0.88201 1.22253 1.01236 0.97400 0.96494 1.20155 0.97122 0.88765 0.86651 0.92659 1.42440 1.37745 1.30037 1.27436 1.20027 1.12835 1.03114 1.10362 0.91685 1.25756 0.99370 1.04355 0.94626 1.70888 1.22098 1.24389 1.41443 0.83266 0.74753 0.74937 0.76150 1.22253 1.22203 1.21060 1.22709 1.00743 1.00976 0.94880 1.22245 1.02177 0.78224 0.99711 1.48161 1.52677 1.10322 1.19705 1.17054 0.79299 0.86317 0.81198 1.90869 1.58718 1.12441 1.76800 1.24024 0.96951 0.97675 1.01014 1.74227 1.23762 0.99275 0.99038 1.73903 1.09897 1.23370 1.07398 1.21860 0.85191 0.85007 0.90534 1.84709 1.74937 1.49855 1.15334 1.68172 1.37587 1.06749 1.12507 1.19822 0.88155 0.83427 0.86696 1.84724 1.58384 1.27167 1.54987 0.91387 0.90997 0.92501 0.90204 0.91926 0.80073 0.93403 0.92725 0.90301 0.89401 0.90254 0.71642 0.71556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.03 37.16 0.34 -1.58 16 2 C 0.14 1.88 3.20 -67.60 -0.22 1.67 16 3 H 0.10 1.33 7.02 -51.93 -0.36 0.96 16 4 C -0.13 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.33 2.53 -67.89 -0.17 3.16 16 6 H 0.06 1.03 6.43 -51.93 -0.33 0.70 16 7 N -0.74 -17.37 5.12 -53.38 -0.27 -17.64 16 8 C -0.33 -8.94 9.93 -15.06 -0.15 -9.09 16 9 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 10 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 11 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 12 Si 1.08 25.29 29.92 -169.99 -5.09 20.21 16 13 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.10 1.34 5.62 -3.71 -0.02 1.32 16 18 N -0.58 -7.68 2.68 -166.41 -0.45 -8.13 16 19 C 0.58 7.91 7.33 -12.43 -0.09 7.82 16 20 O -0.51 -8.07 15.62 -9.46 -0.15 -8.22 16 21 C -0.04 -0.55 6.10 -82.56 -0.50 -1.05 16 22 N -0.10 -1.30 8.59 33.45 0.29 -1.01 16 23 N -0.28 -3.36 11.60 29.21 0.34 -3.02 16 24 C 0.48 5.02 8.81 -90.58 -0.80 4.22 16 25 O -0.45 -3.43 13.63 -17.57 -0.24 -3.67 16 26 N -0.51 -5.64 10.57 -14.33 -0.15 -5.79 16 27 C 0.42 4.69 7.81 -16.15 -0.13 4.56 16 28 O -0.45 -4.37 12.44 -32.32 -0.40 -4.77 16 29 H 0.07 0.85 5.73 -51.93 -0.30 0.55 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.37 9.03 6.63 -40.82 -0.27 8.76 16 35 H 0.25 7.56 6.78 -40.82 -0.28 7.28 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.16 4.56 -51.93 -0.24 0.92 16 39 H 0.08 1.01 7.51 -51.93 -0.39 0.62 16 40 H 0.42 0.79 9.06 45.56 0.41 1.20 16 41 H 0.42 2.08 9.06 45.56 0.41 2.49 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -34.94 341.15 -5.43 -40.37 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.09 Total: 9.38 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.12 Total: 4.88 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.52 Total: -63.32 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.79 Total: -16.65 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.94 -5.43 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044664635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.950 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds