Wall clock time and date at job start Fri Apr 10 2020 18:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.58935 * 2 1 4 4 C 1.53192 * 109.59868 * 120.43793 * 2 1 3 5 5 C 1.53041 * 109.31424 * 65.12678 * 4 2 1 6 6 H 1.09003 * 109.46196 * 301.37306 * 5 4 2 7 7 N 1.46503 * 109.46040 * 181.40240 * 5 4 2 8 8 C 1.36938 * 119.99968 * 154.97595 * 7 5 4 9 9 H 1.07996 * 120.00062 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99529 * 179.97438 * 8 7 5 11 11 N 1.31610 * 120.00514 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99406 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47161 * 59.99863 * 12 10 8 14 14 H 1.48502 * 109.46780 * 299.99918 * 12 10 8 15 15 H 1.48499 * 109.47018 * 179.97438 * 12 10 8 16 16 C 1.53037 * 109.52375 * 61.39016 * 5 4 2 17 17 C 1.53196 * 109.31187 * 298.62305 * 16 5 4 18 18 N 1.46921 * 108.77227 * 54.64030 * 17 16 5 19 19 C 1.34780 * 120.63354 * 126.41275 * 18 17 16 20 20 O 1.21579 * 120.00002 * 176.26427 * 19 18 17 21 21 C 1.47612 * 119.99589 * 356.25930 * 19 18 17 22 22 N 1.33055 * 120.53124 * 39.40358 * 21 19 18 23 23 N 1.28714 * 120.36760 * 179.97438 * 22 21 19 24 24 C 1.32941 * 121.55638 * 0.02562 * 23 22 21 25 25 O 1.35292 * 119.47420 * 179.97438 * 24 23 22 26 26 N 1.32469 * 121.05990 * 0.02562 * 24 23 22 27 27 C 1.32862 * 119.51301 * 359.68428 * 26 24 23 28 28 O 1.35288 * 120.71772 * 180.30108 * 27 26 24 29 29 H 1.08999 * 109.47435 * 180.28452 * 1 2 3 30 30 H 1.09004 * 109.46737 * 300.28504 * 1 2 3 31 31 H 1.09003 * 109.46841 * 60.28096 * 1 2 3 32 32 H 1.09006 * 109.48268 * 305.18529 * 4 2 1 33 33 H 1.08997 * 109.51430 * 185.08966 * 4 2 1 34 34 H 0.96998 * 119.99572 * 334.97054 * 7 5 4 35 35 H 0.97003 * 120.00149 * 359.97438 * 11 10 8 36 36 H 1.08994 * 109.50169 * 58.58236 * 16 5 4 37 37 H 1.09005 * 109.49858 * 178.67903 * 16 5 4 38 38 H 1.09005 * 109.58533 * 174.42425 * 17 16 5 39 39 H 1.08997 * 109.58641 * 294.70609 * 17 16 5 40 40 H 0.96701 * 113.99859 * 89.99893 * 25 24 23 41 41 H 0.96702 * 113.99569 * 270.25666 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0439 -0.7311 1.2443 5 6 1.6414 -2.2056 1.1673 6 1 0.5564 -2.2827 1.0963 7 7 2.1022 -2.9009 2.3717 8 6 1.4643 -4.0371 2.7927 9 1 0.6212 -4.4204 2.2372 10 6 1.9014 -4.6961 3.9336 11 7 2.9291 -4.2293 4.6103 12 14 1.0316 -6.2465 4.5075 13 1 1.1092 -7.2801 3.4442 14 1 -0.3923 -5.9377 4.7948 15 1 1.6868 -6.7544 5.7396 16 6 2.2800 -2.8463 -0.0671 17 6 1.7690 -2.1393 -1.3265 18 7 2.0225 -0.6981 -1.1954 19 6 2.6936 -0.0289 -2.1536 20 8 2.8380 1.1752 -2.0666 21 6 3.2534 -0.7579 -3.3087 22 7 2.5730 -1.7511 -3.8754 23 7 3.0639 -2.3843 -4.8827 24 6 4.2539 -2.0734 -5.3872 25 8 4.7297 -2.7672 -6.4468 26 7 4.9819 -1.0958 -4.8685 27 6 4.5134 -0.4103 -3.8313 28 8 5.2337 0.5969 -3.2863 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.6080 -0.2811 2.1363 33 1 3.1300 -0.6524 1.2902 34 1 2.8593 -2.5564 2.8707 35 1 3.3815 -3.4248 4.3117 36 1 3.3638 -2.7475 -0.0088 37 1 2.0121 -3.9021 -0.1087 38 1 2.2943 -2.5247 -2.2004 39 1 0.6990 -2.3159 -1.4360 40 1 4.4846 -2.3930 -7.3041 41 1 5.8296 0.3159 -2.5784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044664635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:53 Heat of formation + Delta-G solvation = -33.499187 kcal Electronic energy + Delta-G solvation = -28010.053364 eV Core-core repulsion = 23926.832793 eV Total energy + Delta-G solvation = -4083.220571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49044 -41.47240 -39.77245 -38.92321 -38.91441 -36.56883 -35.71649 -34.34659 -33.64019 -32.63616 -30.87671 -28.63769 -27.56890 -26.45934 -25.75919 -24.61446 -23.69495 -22.46979 -21.27695 -21.00070 -20.03371 -19.74880 -19.28386 -18.74317 -17.88677 -17.38490 -16.96461 -16.41782 -16.36902 -16.12798 -15.60577 -15.48215 -15.23946 -14.93254 -14.66304 -14.33365 -14.19701 -14.04850 -13.87960 -13.68677 -13.24385 -13.00145 -12.94104 -12.80338 -12.67986 -12.54123 -12.38556 -12.11908 -11.97129 -11.86633 -11.51306 -11.46945 -11.24200 -11.04452 -10.88927 -10.69998 -9.88136 -9.09981 -8.35003 -5.29496 -1.27436 -1.06837 1.06206 1.26028 1.52182 1.60710 1.62448 1.69855 1.85707 1.93555 2.35795 2.73362 2.96200 3.20363 3.43058 3.54427 3.59715 3.76609 3.92473 3.98908 4.11076 4.15943 4.25442 4.46786 4.47673 4.57311 4.71365 4.74306 4.93663 4.97164 4.99652 5.12025 5.18939 5.24879 5.40691 5.50494 5.64666 6.04970 6.07349 6.16997 6.53169 6.66576 6.79587 7.12448 8.02678 8.14327 9.16890 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003374 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.746080 B = 8297.301406 C = 9167.427172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.104 0.896 4 C -0.124 4.124 5 C 0.179 3.821 6 H 0.055 0.945 7 N -0.749 5.749 8 C -0.324 4.324 9 H 0.069 0.931 10 C -0.105 4.105 11 N -0.979 5.979 12 Si 1.123 2.877 13 H -0.279 1.279 14 H -0.277 1.277 15 H -0.297 1.297 16 C -0.141 4.141 17 C 0.113 3.887 18 N -0.577 5.577 19 C 0.585 3.415 20 O -0.535 6.535 21 C -0.058 4.058 22 N -0.109 5.109 23 N -0.297 5.297 24 C 0.490 3.510 25 O -0.445 6.445 26 N -0.513 5.513 27 C 0.426 3.574 28 O -0.451 6.451 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.358 0.642 35 H 0.244 0.756 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.446 0.554 41 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 8.464 -21.038 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.122 0.878 4 C -0.163 4.163 5 C 0.071 3.929 6 H 0.073 0.927 7 N -0.390 5.390 8 C -0.456 4.456 9 H 0.087 0.913 10 C -0.296 4.296 11 N -0.627 5.627 12 Si 0.949 3.051 13 H -0.205 1.205 14 H -0.203 1.203 15 H -0.223 1.223 16 C -0.182 4.182 17 C -0.010 4.010 18 N -0.308 5.308 19 C 0.369 3.631 20 O -0.411 6.411 21 C -0.211 4.211 22 N 0.032 4.968 23 N -0.160 5.160 24 C 0.186 3.814 25 O -0.252 6.252 26 N -0.257 5.257 27 C 0.228 3.772 28 O -0.262 6.262 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.189 0.811 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.313 0.687 41 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -0.297 7.046 -20.483 21.663 hybrid contribution 1.302 1.739 -0.620 2.259 sum 1.005 8.785 -21.103 22.881 Atomic orbital electron populations 1.22124 0.92998 1.03075 1.03294 1.21282 0.95585 0.96663 0.81870 0.87793 1.22109 1.00920 0.95454 0.97784 1.20384 0.97047 0.90226 0.85289 0.92718 1.42661 1.37442 1.29775 1.29085 1.20362 1.12187 1.03423 1.09613 0.91291 1.27069 0.99809 1.07167 0.95532 1.70993 1.23957 1.24935 1.42834 0.82673 0.74547 0.72307 0.75581 1.20517 1.20291 1.22332 1.22490 0.99988 1.00154 0.95574 1.22105 1.02855 0.77989 0.98082 1.48152 1.52707 1.10147 1.19792 1.17124 0.78639 0.86032 0.81331 1.90857 1.59440 1.13349 1.77427 1.23814 0.97670 0.98386 1.01181 1.74123 1.24142 0.99246 0.99305 1.73883 1.10773 1.23708 1.07629 1.21941 0.84530 0.84277 0.90686 1.84679 1.74684 1.49728 1.16119 1.68300 1.37610 1.07182 1.12628 1.19811 0.87881 0.83075 0.86421 1.84680 1.58746 1.27004 1.55779 0.91954 0.89966 0.91564 0.90290 0.92484 0.81083 0.94582 0.93695 0.91990 0.88644 0.88970 0.68667 0.69257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.03 71.98 0.65 -2.76 16 2 C 0.15 3.70 3.20 44.97 0.14 3.84 16 3 H 0.10 2.59 7.02 -2.39 -0.02 2.58 16 4 C -0.12 -3.68 5.02 30.67 0.15 -3.53 16 5 C 0.18 6.43 2.53 45.02 0.11 6.55 16 6 H 0.05 2.00 6.43 -2.39 -0.02 1.98 16 7 N -0.75 -35.71 5.12 -322.81 -1.65 -37.37 16 8 C -0.32 -17.45 9.93 84.03 0.83 -16.61 16 9 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 10 C -0.10 -5.92 5.50 84.86 0.47 -5.46 16 11 N -0.98 -60.30 13.70 21.65 0.30 -60.01 16 12 Si 1.12 50.87 29.92 68.60 2.05 52.93 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 16 C -0.14 -4.58 5.66 30.67 0.17 -4.41 16 17 C 0.11 2.87 5.62 86.36 0.49 3.36 16 18 N -0.58 -14.53 2.68 -798.66 -2.14 -16.67 16 19 C 0.59 15.17 7.33 86.72 0.64 15.80 16 20 O -0.53 -16.06 15.62 10.14 0.16 -15.91 16 21 C -0.06 -1.35 6.10 42.05 0.26 -1.09 16 22 N -0.11 -2.56 8.59 -48.10 -0.41 -2.98 16 23 N -0.30 -6.53 11.60 -174.23 -2.02 -8.55 16 24 C 0.49 9.32 8.81 180.33 1.59 10.91 16 25 O -0.45 -5.79 13.63 -85.78 -1.17 -6.96 16 26 N -0.51 -10.47 10.57 -424.97 -4.49 -14.97 16 27 C 0.43 8.92 7.81 85.16 0.67 9.59 16 28 O -0.45 -8.15 12.44 -71.63 -0.89 -9.04 16 29 H 0.06 1.43 5.73 -2.39 -0.01 1.42 16 30 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.36 18.10 6.63 -92.71 -0.61 17.48 16 35 H 0.24 14.93 6.78 -92.71 -0.63 14.30 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.10 2.38 4.56 -2.38 -0.01 2.37 16 39 H 0.09 2.16 7.51 -2.39 -0.02 2.14 16 40 H 0.45 0.48 9.06 -74.06 -0.67 -0.19 16 41 H 0.44 3.67 9.06 -74.06 -0.67 2.99 16 Total: -1.00 -74.35 341.15 -4.78 -79.13 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.68 Total: 24.19 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.17 Total: 16.19 kcal Atomic # 7 Polarization: -130.11 SS G_CDS: -10.42 Total: -140.54 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.90 Total: -31.90 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.93 kcal Total: -74.35 -4.78 -79.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044664635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.634 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds