Wall clock time and date at job start Fri Apr 10 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00023 * 2 1 4 4 O 1.21283 * 120.00173 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99822 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.47026 * 179.97438 * 5 3 2 7 7 C 1.38233 * 119.58444 * 124.99990 * 6 5 3 8 8 C 1.38595 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.38877 * 118.40020 * 359.97438 * 8 7 6 10 10 F 1.35095 * 120.44590 * 179.97438 * 9 8 7 11 11 C 1.38420 * 119.11203 * 0.02562 * 9 8 7 12 12 N 1.31842 * 119.59264 * 305.02769 * 6 5 3 13 13 C 1.46505 * 120.00341 * 180.02562 * 2 1 3 14 14 H 1.08998 * 110.88660 * 177.56863 * 13 2 1 15 15 C 1.54908 * 111.00347 * 301.45179 * 13 2 1 16 16 N 1.47421 * 104.83124 * 155.07768 * 15 13 2 17 17 C 1.36936 * 125.64457 * 155.90329 * 16 15 13 18 18 H 1.08003 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99904 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99655 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47427 * 59.99722 * 21 19 17 23 23 H 1.48500 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47135 * 299.99249 * 21 19 17 25 25 C 1.47019 * 108.70503 * 335.87775 * 16 15 13 26 26 C 1.54321 * 107.27406 * 1.05345 * 25 16 15 27 27 H 1.09005 * 110.72219 * 263.83768 * 26 25 16 28 28 O 1.42902 * 110.72302 * 140.55819 * 26 25 16 29 29 H 1.08994 * 109.47154 * 90.00154 * 1 2 3 30 30 H 1.09004 * 109.46856 * 209.99902 * 1 2 3 31 31 H 1.08998 * 109.46946 * 329.99642 * 1 2 3 32 32 H 1.09001 * 109.46853 * 60.00259 * 5 3 2 33 33 H 1.09003 * 109.47260 * 300.00320 * 5 3 2 34 34 H 1.08005 * 120.41114 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.79771 * 179.72835 * 8 7 6 36 36 H 1.08000 * 119.63675 * 179.97438 * 11 9 8 37 37 H 1.08994 * 110.36387 * 273.92205 * 15 13 2 38 38 H 1.09001 * 110.36226 * 36.24499 * 15 13 2 39 39 H 0.97003 * 119.99130 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.88647 * 120.47350 * 25 16 15 41 41 H 1.09006 * 109.87857 * 241.48392 * 25 16 15 42 42 H 0.96700 * 113.99360 * 66.47786 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.2840 4.5850 -0.9832 8 6 3.1892 5.6346 -0.9751 9 6 4.1474 5.6727 0.0293 10 9 5.0503 6.6766 0.0763 11 6 4.1658 4.6678 0.9810 12 7 3.2879 3.6847 0.9399 13 6 2.1976 -1.2687 -0.0006 14 1 3.2730 -1.0965 -0.0437 15 6 1.8218 -2.1274 1.2327 16 7 2.0992 -3.5164 0.8241 17 6 2.3686 -4.5586 1.6706 18 1 2.3898 -4.3957 2.7381 19 6 2.6145 -5.8245 1.1567 20 7 2.5882 -6.0230 -0.1442 21 14 2.9813 -7.2462 2.3114 22 1 1.8310 -7.4486 3.2285 23 1 3.2055 -8.4821 1.5192 24 1 4.1985 -6.9385 3.1044 25 6 2.0382 -3.5976 -0.6425 26 6 1.7321 -2.1791 -1.1676 27 1 0.6643 -2.0572 -1.3495 28 8 2.4827 -1.9057 -2.3525 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7590 2.5298 0.8909 33 1 0.7582 2.5303 -0.8891 34 1 1.5256 4.5232 -1.7496 35 1 3.1526 6.4021 -1.7341 36 1 4.9076 4.6889 1.7657 37 1 2.4389 -1.8531 2.0882 38 1 0.7652 -2.0062 1.4716 39 1 2.7596 -6.9077 -0.5032 40 1 2.9958 -3.9396 -1.0351 41 1 1.2476 -4.2852 -0.9431 42 1 2.2304 -2.4486 -3.1119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047433944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:28 Heat of formation + Delta-G solvation = -49.118972 kcal Electronic energy + Delta-G solvation = -27184.676832 eV Core-core repulsion = 23080.858975 eV Total energy + Delta-G solvation = -4103.817857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.21670 -40.65157 -39.56906 -37.76484 -35.18673 -34.74363 -33.02403 -32.73171 -31.82363 -29.06469 -27.94314 -27.27343 -26.43274 -24.42723 -24.16330 -22.81208 -20.57969 -20.38204 -18.88368 -17.89964 -17.68425 -17.21489 -17.08068 -16.44350 -16.37705 -15.99052 -15.63912 -15.35962 -14.68088 -14.32216 -14.15764 -14.09386 -13.91821 -13.45004 -13.28016 -13.06594 -12.89712 -12.68646 -12.44660 -12.36114 -12.18738 -12.05353 -11.89833 -11.39735 -11.20152 -10.85176 -10.78865 -10.20207 -10.17013 -9.91177 -9.82405 -9.80184 -9.63259 -9.27807 -9.03072 -8.70755 -8.33187 -6.91686 -5.76486 -3.11606 0.62664 0.86192 2.82805 3.03789 3.39300 3.43420 3.44326 3.46150 3.72691 4.02345 4.27433 4.44403 4.46397 4.52983 4.65335 4.76987 5.02187 5.06519 5.12479 5.24027 5.27407 5.40411 5.44931 5.51860 5.56111 5.62230 5.65167 5.68803 5.75813 5.84935 6.06848 6.15761 6.33566 6.50696 6.62362 6.90661 7.34452 7.47350 7.59521 7.67631 7.73418 8.16894 8.19169 8.40262 9.14229 9.74427 10.37535 11.34848 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002613 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.911604 B =10713.296891 C =11121.025667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.519 3.481 4 O -0.520 6.520 5 C -0.090 4.090 6 C 0.136 3.864 7 C -0.138 4.138 8 C -0.109 4.109 9 C 0.040 3.960 10 F -0.133 7.133 11 C 0.083 3.917 12 N -0.427 5.427 13 C 0.136 3.864 14 H 0.114 0.886 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.231 4.231 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.153 3.847 26 C 0.066 3.934 27 H 0.056 0.944 28 O -0.561 6.561 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 21.903 -3.538 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.130 4.130 6 C -0.002 4.002 7 C -0.157 4.157 8 C -0.136 4.136 9 C 0.019 3.981 10 F -0.111 7.111 11 C -0.076 4.076 12 N -0.134 5.134 13 C 0.032 3.968 14 H 0.132 0.868 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.359 4.359 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.027 3.973 26 C 0.005 3.995 27 H 0.073 0.927 28 O -0.366 6.366 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.700 21.478 -2.528 22.364 hybrid contribution -0.065 -0.424 -0.538 0.688 sum -5.764 21.053 -3.065 22.042 Atomic orbital electron populations 1.21848 0.80025 1.03590 1.01764 1.47712 1.06677 1.05835 1.73421 1.20102 0.88062 0.84538 0.76713 1.90741 1.13667 1.86818 1.48234 1.20662 0.96806 0.90031 1.05541 1.20714 0.93954 0.94434 0.91093 1.21863 1.00075 0.94254 0.99556 1.21590 0.94297 0.99741 0.97973 1.18863 0.91248 0.88996 0.99031 1.91514 1.65201 1.58288 1.96141 1.22933 0.98042 0.88905 0.97725 1.67532 1.01800 1.20396 1.23683 1.22360 0.98428 0.81087 0.94951 0.86812 1.21786 0.97805 0.85579 0.94433 1.44228 1.83366 1.03101 1.01984 1.19033 1.41411 0.86478 0.88945 0.90185 1.24825 1.01685 0.97625 0.96165 1.69928 1.55464 1.21727 1.09904 0.86145 0.78263 0.81552 0.79474 1.21098 1.21557 1.21028 1.21833 1.01715 0.89589 0.84161 1.23544 0.93411 0.97520 0.84994 0.92655 1.86502 1.64092 1.64746 1.21244 0.92652 0.90073 0.91164 0.86770 0.87188 0.83678 0.83531 0.81587 0.93320 0.95682 0.93588 0.92241 0.93428 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.93 59.85 0.53 1.27 16 2 N -0.60 -9.08 2.91 -171.48 -0.50 -9.58 16 3 C 0.52 8.02 7.61 -10.98 -0.08 7.93 16 4 O -0.52 -10.50 14.71 5.55 0.08 -10.41 16 5 C -0.09 -0.90 4.65 -29.03 -0.14 -1.04 16 6 C 0.14 1.57 5.76 -82.59 -0.48 1.10 16 7 C -0.14 -1.20 9.71 -39.45 -0.38 -1.58 16 8 C -0.11 -0.95 10.16 -39.21 -0.40 -1.35 16 9 C 0.04 0.42 7.34 -39.28 -0.29 0.13 16 10 F -0.13 -1.38 17.28 2.25 0.04 -1.34 16 11 C 0.08 0.97 11.17 -17.47 -0.20 0.77 16 12 N -0.43 -5.84 9.22 -9.42 -0.09 -5.93 16 13 C 0.14 2.62 3.18 -65.78 -0.21 2.41 16 14 H 0.11 2.60 7.01 -51.93 -0.36 2.24 16 15 C 0.13 2.74 6.80 -2.53 -0.02 2.72 16 16 N -0.60 -15.25 3.39 -170.08 -0.58 -15.83 16 17 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.80 10.31 55.49 0.57 -26.23 16 21 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.15 3.65 5.15 -3.07 -0.02 3.64 16 26 C 0.07 1.25 3.89 -24.90 -0.10 1.15 16 27 H 0.06 0.93 7.06 -51.93 -0.37 0.56 16 28 O -0.56 -10.40 13.39 -35.23 -0.47 -10.87 16 29 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.08 0.91 6.30 -51.93 -0.33 0.59 16 31 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 32 H 0.11 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.11 0.73 7.83 -51.93 -0.41 0.33 16 34 H 0.15 0.78 7.95 -52.48 -0.42 0.37 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.49 6.28 -51.93 -0.33 0.16 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.62 7.29 -51.93 -0.38 1.25 16 41 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 42 H 0.37 5.28 9.12 45.56 0.42 5.70 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -36.11 350.87 -7.21 -43.31 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.51 Total: 4.28 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -2.01 Total: 10.31 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.59 Total: -57.56 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.39 Total: -21.28 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.11 -7.21 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047433944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.806 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds