Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00023 * 2 1 4 4 O 1.21283 * 120.00173 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99822 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.47026 * 179.97438 * 5 3 2 7 7 C 1.38233 * 119.58444 * 124.99990 * 6 5 3 8 8 C 1.38595 * 119.18678 * 180.02562 * 7 6 5 9 9 C 1.38877 * 118.40020 * 359.97438 * 8 7 6 10 10 F 1.35095 * 120.44590 * 179.97438 * 9 8 7 11 11 C 1.38420 * 119.11203 * 0.02562 * 9 8 7 12 12 N 1.31842 * 119.59264 * 305.02769 * 6 5 3 13 13 C 1.46505 * 120.00341 * 180.02562 * 2 1 3 14 14 H 1.08998 * 110.88660 * 177.56863 * 13 2 1 15 15 C 1.54908 * 111.00347 * 301.45179 * 13 2 1 16 16 N 1.47421 * 104.83124 * 155.07768 * 15 13 2 17 17 C 1.36936 * 125.64457 * 155.90329 * 16 15 13 18 18 H 1.08003 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99904 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99655 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47427 * 59.99722 * 21 19 17 23 23 H 1.48500 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47135 * 299.99249 * 21 19 17 25 25 C 1.47019 * 108.70503 * 335.87775 * 16 15 13 26 26 C 1.54321 * 107.27406 * 1.05345 * 25 16 15 27 27 H 1.09005 * 110.72219 * 263.83768 * 26 25 16 28 28 O 1.42902 * 110.72302 * 140.55819 * 26 25 16 29 29 H 1.08994 * 109.47154 * 90.00154 * 1 2 3 30 30 H 1.09004 * 109.46856 * 209.99902 * 1 2 3 31 31 H 1.08998 * 109.46946 * 329.99642 * 1 2 3 32 32 H 1.09001 * 109.46853 * 60.00259 * 5 3 2 33 33 H 1.09003 * 109.47260 * 300.00320 * 5 3 2 34 34 H 1.08005 * 120.41114 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.79771 * 179.72835 * 8 7 6 36 36 H 1.08000 * 119.63675 * 179.97438 * 11 9 8 37 37 H 1.08994 * 110.36387 * 273.92205 * 15 13 2 38 38 H 1.09001 * 110.36226 * 36.24499 * 15 13 2 39 39 H 0.97003 * 119.99130 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.88647 * 120.47350 * 25 16 15 41 41 H 1.09006 * 109.87857 * 241.48392 * 25 16 15 42 42 H 0.96700 * 113.99360 * 66.47786 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.2840 4.5850 -0.9832 8 6 3.1892 5.6346 -0.9751 9 6 4.1474 5.6727 0.0293 10 9 5.0503 6.6766 0.0763 11 6 4.1658 4.6678 0.9810 12 7 3.2879 3.6847 0.9399 13 6 2.1976 -1.2687 -0.0006 14 1 3.2730 -1.0965 -0.0437 15 6 1.8218 -2.1274 1.2327 16 7 2.0992 -3.5164 0.8241 17 6 2.3686 -4.5586 1.6706 18 1 2.3898 -4.3957 2.7381 19 6 2.6145 -5.8245 1.1567 20 7 2.5882 -6.0230 -0.1442 21 14 2.9813 -7.2462 2.3114 22 1 1.8310 -7.4486 3.2285 23 1 3.2055 -8.4821 1.5192 24 1 4.1985 -6.9385 3.1044 25 6 2.0382 -3.5976 -0.6425 26 6 1.7321 -2.1791 -1.1676 27 1 0.6643 -2.0572 -1.3495 28 8 2.4827 -1.9057 -2.3525 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7590 2.5298 0.8909 33 1 0.7582 2.5303 -0.8891 34 1 1.5256 4.5232 -1.7496 35 1 3.1526 6.4021 -1.7341 36 1 4.9076 4.6889 1.7657 37 1 2.4389 -1.8531 2.0882 38 1 0.7652 -2.0062 1.4716 39 1 2.7596 -6.9077 -0.5032 40 1 2.9958 -3.9396 -1.0351 41 1 1.2476 -4.2852 -0.9431 42 1 2.2304 -2.4486 -3.1119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047433944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -77.071243 kcal Electronic energy + Delta-G solvation = -27185.888933 eV Core-core repulsion = 23080.858975 eV Total energy + Delta-G solvation = -4105.029959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.99976 -41.57651 -40.72248 -39.26736 -36.71527 -36.24236 -34.10788 -33.51492 -33.44335 -30.60531 -29.35801 -28.51926 -27.63430 -26.21022 -24.95330 -23.72788 -22.31546 -21.85306 -20.14131 -19.00971 -18.74807 -18.62470 -18.26346 -17.71183 -17.43586 -17.03795 -16.78486 -16.42445 -16.37842 -15.79473 -15.39865 -14.93919 -14.91172 -14.71472 -14.51092 -14.31578 -14.02032 -13.95118 -13.88181 -13.57347 -13.22262 -13.17357 -13.12861 -12.97321 -12.74569 -12.69700 -12.61761 -12.11220 -11.88098 -11.52550 -11.04375 -10.90737 -10.78854 -10.76402 -10.48905 -9.83072 -9.61862 -8.95382 -7.88887 -5.26648 -0.12991 0.16446 1.45118 1.48977 1.54872 1.71461 1.92833 2.47349 2.64605 2.98821 3.14571 3.28798 3.32117 3.58861 3.61310 3.73852 3.81021 3.87577 3.94756 4.08923 4.16244 4.31978 4.32748 4.47490 4.49575 4.54205 4.64262 4.71305 4.79071 4.85268 4.89462 4.98120 5.02235 5.10148 5.36480 5.42886 5.56290 5.63426 5.65544 6.12566 6.48802 6.86169 6.91046 7.03461 7.27366 7.68705 8.31392 9.20529 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002613 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.911604 B =10713.296891 C =11121.025667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.510 3.490 4 O -0.580 6.580 5 C -0.078 4.078 6 C 0.112 3.888 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.031 3.969 10 F -0.137 7.137 11 C 0.060 3.940 12 N -0.469 5.469 13 C 0.148 3.852 14 H 0.068 0.932 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.248 4.248 18 H 0.084 0.916 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.982 3.018 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.163 3.837 26 C 0.087 3.913 27 H 0.092 0.908 28 O -0.572 6.572 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.026 0.974 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 23.853 -4.298 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C 0.300 3.700 4 O -0.458 6.458 5 C -0.117 4.117 6 C -0.027 4.027 7 C -0.145 4.145 8 C -0.132 4.132 9 C 0.009 3.991 10 F -0.115 7.115 11 C -0.098 4.098 12 N -0.177 5.177 13 C 0.042 3.958 14 H 0.086 0.914 15 C 0.007 3.993 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.102 0.898 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.197 1.197 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.037 3.963 26 C 0.027 3.973 27 H 0.110 0.890 28 O -0.380 6.380 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.196 0.804 36 H 0.185 0.815 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.603 23.468 -3.283 25.210 hybrid contribution 0.842 -0.980 -0.314 1.330 sum -7.760 22.488 -3.597 24.059 Atomic orbital electron populations 1.22237 0.76576 1.05308 1.03886 1.47773 1.08554 1.04021 1.73036 1.21154 0.87755 0.86074 0.75040 1.90724 1.16610 1.87707 1.50796 1.20791 0.96305 0.85757 1.08892 1.21165 0.94105 0.95778 0.91633 1.22284 1.00317 0.92787 0.99071 1.22011 0.93157 1.00392 0.97642 1.18990 0.91828 0.88686 0.99550 1.91501 1.65504 1.58327 1.96214 1.23032 0.98511 0.89526 0.98780 1.67470 1.03169 1.21444 1.25643 1.21772 0.96657 0.83229 0.94167 0.91365 1.21900 0.98949 0.83694 0.94785 1.44506 1.83408 1.04509 1.02541 1.19428 1.41036 0.87512 0.89683 0.89812 1.25684 1.02052 1.00149 0.97735 1.70144 1.56431 1.21756 1.11466 0.85112 0.78305 0.78060 0.77597 1.19708 1.21847 1.20748 1.21603 0.98524 0.92476 0.83735 1.23293 0.95153 0.93880 0.84984 0.89022 1.86471 1.64648 1.65095 1.21748 0.90259 0.90884 0.87011 0.84205 0.82583 0.79466 0.80391 0.81458 0.94711 0.92712 0.94193 0.96816 0.95594 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.93 127.77 1.14 2.13 16 2 N -0.60 -16.79 2.91 -814.81 -2.37 -19.16 16 3 C 0.51 14.90 7.61 87.66 0.67 15.57 16 4 O -0.58 -23.89 14.71 -3.04 -0.04 -23.93 16 5 C -0.08 -1.26 4.65 29.10 0.14 -1.12 16 6 C 0.11 2.30 5.76 42.56 0.25 2.55 16 7 C -0.13 -1.70 9.71 22.35 0.22 -1.48 16 8 C -0.11 -1.52 10.16 22.51 0.23 -1.30 16 9 C 0.03 0.62 7.34 22.47 0.17 0.78 16 10 F -0.14 -2.79 17.28 44.97 0.78 -2.01 16 11 C 0.06 1.43 11.17 84.73 0.95 2.38 16 12 N -0.47 -12.80 9.22 -183.71 -1.69 -14.49 16 13 C 0.15 5.70 3.18 46.38 0.15 5.85 16 14 H 0.07 3.28 7.01 -2.39 -0.02 3.27 16 15 C 0.13 5.57 6.80 86.86 0.59 6.16 16 16 N -0.62 -32.45 3.39 -692.00 -2.35 -34.80 16 17 C -0.25 -14.07 10.28 84.03 0.86 -13.21 16 18 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 19 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 20 N -0.95 -56.96 10.31 21.65 0.22 -56.74 16 21 Si 0.98 45.97 29.55 68.60 2.03 47.99 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 C 0.16 8.03 5.15 86.73 0.45 8.48 16 26 C 0.09 3.27 3.89 31.78 0.12 3.40 16 27 H 0.09 2.81 7.06 -2.38 -0.02 2.80 16 28 O -0.57 -20.90 13.39 -148.98 -1.99 -22.89 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.07 1.34 6.30 -2.38 -0.02 1.33 16 31 H 0.11 0.91 6.44 -2.39 -0.02 0.90 16 32 H 0.14 1.54 7.40 -2.39 -0.02 1.52 16 33 H 0.16 1.05 7.83 -2.39 -0.02 1.03 16 34 H 0.19 0.86 7.95 -2.91 -0.02 0.83 16 35 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 2.01 6.28 -2.39 -0.01 1.99 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.01 0.79 7.29 -2.39 -0.02 0.77 16 41 H 0.03 1.37 7.50 -2.38 -0.02 1.35 16 42 H 0.39 10.73 9.12 -74.06 -0.68 10.06 16 Total: -1.00 -85.51 350.87 1.35 -84.16 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.39 Total: 14.82 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 6.38 Total: 27.05 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.19 Total: -125.19 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.04 Total: -46.82 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -85.51 1.35 -84.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047433944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.087 kcal (2) G-P(sol) polarization free energy of solvation -85.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds