Wall clock time and date at job start Fri Apr 10 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48505 * 109.47088 * 274.99080 * 3 2 1 5 5 H 1.48501 * 109.47169 * 34.98613 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.99269 * 3 2 1 7 7 C 1.38814 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99508 * 168.65187 * 7 2 1 9 9 N 1.36935 * 119.99850 * 348.65048 * 7 2 1 10 10 C 1.48289 * 128.21251 * 342.53901 * 9 7 2 11 11 H 1.09004 * 112.21037 * 343.24637 * 10 9 7 12 12 C 1.54613 * 104.26144 * 221.60365 * 10 9 7 13 13 C 1.54321 * 104.74689 * 334.85235 * 12 10 9 14 14 C 1.48299 * 128.20711 * 162.51521 * 9 7 2 15 15 H 1.08998 * 112.20699 * 16.14880 * 14 9 7 16 16 C 1.53702 * 107.27491 * 252.60582 * 14 9 7 17 17 C 1.53153 * 108.87083 * 295.99050 * 16 14 9 18 18 H 1.09004 * 109.43059 * 173.96416 * 17 16 14 19 19 C 1.53001 * 109.43308 * 293.82309 * 17 16 14 20 20 N 1.46504 * 109.47343 * 300.07099 * 19 17 16 21 21 C 1.34774 * 119.99788 * 180.02562 * 20 19 17 22 22 O 1.21273 * 120.00327 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.99673 * 180.02562 * 21 20 19 24 24 H 1.09005 * 110.50614 * 40.69671 * 23 21 20 25 25 C 1.54095 * 110.56653 * 277.95704 * 23 21 20 26 26 O 1.45698 * 104.00718 * 241.43053 * 25 23 21 27 27 C 1.33765 * 109.47869 * 359.97438 * 26 25 23 28 28 O 1.21510 * 123.07091 * 180.02562 * 27 26 25 29 29 N 1.34327 * 113.90627 * 359.91617 * 27 26 25 30 30 C 1.53696 * 107.27805 * 106.79237 * 10 9 7 31 31 H 0.97006 * 120.00093 * 359.97438 * 1 2 3 32 32 H 1.08992 * 110.38477 * 93.67135 * 12 10 9 33 33 H 1.08996 * 110.38010 * 215.93094 * 12 10 9 34 34 H 1.08993 * 110.38502 * 241.18667 * 13 12 10 35 35 H 1.08998 * 110.37942 * 118.82159 * 13 12 10 36 36 H 1.08996 * 109.57032 * 55.80446 * 16 14 9 37 37 H 1.08992 * 109.56910 * 176.17201 * 16 14 9 38 38 H 1.08997 * 109.47071 * 60.07360 * 19 17 16 39 39 H 1.09001 * 109.46913 * 180.02562 * 19 17 16 40 40 H 0.96999 * 119.99670 * 359.97438 * 20 19 17 41 41 H 1.08996 * 110.51605 * 0.05903 * 25 23 21 42 42 H 1.08994 * 110.51916 * 122.65557 * 25 23 21 43 43 H 0.96995 * 125.74166 * 180.10883 * 29 27 26 44 44 H 1.08994 * 109.57413 * 183.82237 * 30 10 9 45 45 H 1.09005 * 109.56816 * 304.18624 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0744 -1.2112 -0.1846 9 7 1.3456 -2.3765 0.2323 10 6 0.0068 -2.5678 0.8407 11 1 -0.3329 -1.6812 1.3762 12 6 0.1849 -3.7839 1.7787 13 6 1.3682 -4.5725 1.1791 14 6 1.7938 -3.7586 -0.0646 15 1 2.8656 -3.8121 -0.2555 16 6 0.9678 -4.2594 -1.2602 17 6 -0.5055 -4.3328 -0.8484 18 1 -1.1130 -4.5835 -1.7181 19 6 -0.6816 -5.4114 0.2223 20 7 -0.2576 -6.7068 -0.3149 21 6 -0.3251 -7.8105 0.4556 22 8 -0.7363 -7.7314 1.5937 23 6 0.1116 -9.1429 -0.0969 24 1 1.0157 -9.0304 -0.6953 25 6 -1.0159 -9.7776 -0.9340 26 8 -1.3157 -11.0211 -0.2364 27 6 -0.5209 -11.1353 0.8334 28 8 -0.5628 -12.0832 1.5925 29 7 0.3299 -10.1079 0.9916 30 6 -0.9558 -2.9649 -0.2898 31 1 -0.4850 0.8401 0.0004 32 1 0.4230 -3.4523 2.7893 33 1 -0.7174 -4.3953 1.7831 34 1 1.0487 -5.5728 0.8871 35 1 2.1884 -4.6288 1.8948 36 1 1.0793 -3.5686 -2.0959 37 1 1.3146 -5.2500 -1.5542 38 1 -0.0739 -5.1624 1.0923 39 1 -1.7301 -5.4645 0.5155 40 1 0.0709 -6.7702 -1.2254 41 1 -1.8911 -9.1282 -0.9507 42 1 -0.6715 -9.9793 -1.9482 43 1 0.9804 -10.0156 1.7051 44 1 -1.9681 -3.0493 0.1054 45 1 -0.9300 -2.2081 -1.0739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048521624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:33 Heat of formation + Delta-G solvation = 20.003544 kcal Electronic energy + Delta-G solvation = -29000.302076 eV Core-core repulsion = 25022.941901 eV Total energy + Delta-G solvation = -3977.360175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12571 -41.26473 -39.10187 -37.38452 -35.13254 -34.82444 -32.97091 -31.56847 -30.87238 -30.35892 -29.54122 -26.87261 -24.94704 -23.53934 -23.30987 -22.70965 -21.00208 -20.82849 -19.52271 -19.01218 -18.53840 -18.11340 -17.42720 -17.05816 -16.24368 -16.17234 -15.68853 -14.95489 -14.78696 -14.62522 -14.40777 -14.15877 -13.95124 -13.72975 -13.15370 -12.91592 -12.75077 -12.63351 -12.10406 -11.82177 -11.63409 -11.48155 -11.34749 -11.24133 -11.00614 -10.93994 -10.86613 -10.64617 -10.56473 -10.20489 -9.92327 -9.74665 -9.61461 -9.53811 -9.45849 -9.28447 -8.69726 -8.34215 -6.86458 -5.85833 -3.19452 2.16383 2.24675 2.42742 2.85311 3.27857 3.32584 3.40217 3.41159 3.65816 4.18850 4.24082 4.40666 4.61758 4.80300 4.97792 5.10556 5.18489 5.32275 5.37653 5.46657 5.62103 5.70424 5.78553 5.92427 5.97480 6.03018 6.16731 6.24118 6.29984 6.40557 6.41812 6.50278 6.53746 6.61885 6.74937 6.84567 6.85728 6.95915 7.01835 7.31031 7.46867 7.52074 7.68295 7.75158 7.98530 8.15412 9.05777 9.68493 10.48178 11.27607 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037922 B = 0.002823 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.178327 B = 9915.448966 C =10007.214906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.073 0.927 9 N -0.583 5.583 10 C 0.182 3.818 11 H 0.102 0.898 12 C -0.172 4.172 13 C -0.161 4.161 14 C 0.150 3.850 15 H 0.065 0.935 16 C -0.123 4.123 17 C -0.087 4.087 18 H 0.051 0.949 19 C 0.001 3.999 20 N -0.712 5.712 21 C 0.494 3.506 22 O -0.521 6.521 23 C 0.074 3.926 24 H 0.127 0.873 25 C 0.055 3.945 26 O -0.323 6.323 27 C 0.651 3.349 28 O -0.519 6.519 29 N -0.709 5.709 30 C -0.107 4.107 31 H 0.253 0.747 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.197 0.803 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.441 0.559 44 H 0.040 0.960 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -14.734 -4.837 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.091 0.909 9 N -0.304 5.304 10 C 0.075 3.925 11 H 0.119 0.881 12 C -0.210 4.210 13 C -0.200 4.200 14 C 0.042 3.958 15 H 0.083 0.917 16 C -0.163 4.163 17 C -0.106 4.106 18 H 0.070 0.930 19 C -0.117 4.117 20 N -0.364 5.364 21 C 0.276 3.724 22 O -0.397 6.397 23 C -0.037 4.037 24 H 0.144 0.856 25 C -0.021 4.021 26 O -0.233 6.233 27 C 0.404 3.596 28 O -0.403 6.403 29 N -0.382 5.382 30 C -0.147 4.147 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.212 0.788 39 H 0.071 0.929 40 H 0.230 0.770 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.285 0.715 44 H 0.059 0.941 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.490 -15.047 -3.846 15.539 hybrid contribution 0.774 1.187 -0.527 1.512 sum 0.284 -13.860 -4.373 14.536 Atomic orbital electron populations 1.69896 1.04914 1.25262 1.55368 1.24848 0.95557 0.97781 1.01781 0.86192 0.78907 0.83688 0.77460 1.21671 1.21648 1.20640 1.18947 0.91027 0.82671 1.42835 0.90918 1.45147 1.17005 0.99516 1.68705 1.21376 0.86057 0.94343 0.90702 0.88059 1.23497 0.97680 0.99506 1.00365 1.23400 0.97869 0.99617 0.99072 1.21514 0.96075 0.86819 0.91385 0.91701 1.22197 0.95155 0.98731 1.00239 1.21518 0.96916 0.95793 0.96413 0.93020 1.25351 1.02622 0.79941 1.03804 1.46401 1.64932 1.08445 1.16574 1.20426 0.79892 0.85269 0.86829 1.90779 1.45227 1.85761 1.17924 1.22359 1.01358 0.89805 0.90178 0.85573 1.24253 0.98168 0.83240 0.96421 1.87293 1.56815 1.40507 1.38677 1.18497 0.77640 0.83014 0.80479 1.91091 1.71054 1.33719 1.44422 1.45713 1.41079 1.20342 1.31086 1.22262 0.97318 0.93804 1.01304 0.93691 0.92577 0.89449 0.89053 0.92967 0.91716 0.94187 0.78791 0.92916 0.76956 0.87178 0.86182 0.71472 0.94144 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.40 10.47 55.49 0.58 -23.82 16 2 C 0.00 -0.06 5.39 -17.43 -0.09 -0.15 16 3 Si 0.91 20.87 29.57 -169.99 -5.03 15.84 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.23 -5.81 10.36 -15.06 -0.16 -5.96 16 8 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 9 N -0.58 -13.18 2.80 -152.76 -0.43 -13.61 16 10 C 0.18 3.83 3.07 -65.74 -0.20 3.63 16 11 H 0.10 2.50 6.60 -51.93 -0.34 2.16 16 12 C -0.17 -3.01 5.72 -25.19 -0.14 -3.16 16 13 C -0.16 -2.57 5.72 -25.19 -0.14 -2.72 16 14 C 0.15 2.70 4.32 -65.73 -0.28 2.41 16 15 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.12 -1.88 5.27 -26.29 -0.14 -2.02 16 17 C -0.09 -1.29 2.78 -89.77 -0.25 -1.54 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 19 C 0.00 0.01 2.70 -4.04 -0.01 0.00 16 20 N -0.71 -6.84 4.38 -60.29 -0.26 -7.10 16 21 C 0.49 5.10 6.70 -10.99 -0.07 5.02 16 22 O -0.52 -7.84 16.58 5.56 0.09 -7.75 16 23 C 0.07 0.50 4.16 -68.19 -0.28 0.21 16 24 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 25 C 0.05 0.32 7.87 37.73 0.30 0.62 16 26 O -0.32 -3.45 11.09 -37.82 -0.42 -3.87 16 27 C 0.65 8.10 9.16 53.85 0.49 8.59 16 28 O -0.52 -8.50 18.04 -19.12 -0.34 -8.84 16 29 N -0.71 -6.56 5.67 -59.26 -0.34 -6.89 16 30 C -0.11 -2.03 5.36 -25.60 -0.14 -2.16 16 31 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.41 4.86 -51.93 -0.25 1.16 16 34 H 0.09 1.27 3.94 -51.93 -0.20 1.06 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.46 6.71 -51.93 -0.35 0.11 16 38 H 0.20 2.88 1.12 -165.90 -0.19 2.69 16 39 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 40 H 0.40 2.69 7.31 -40.82 -0.30 2.39 16 41 H 0.11 0.61 7.72 -51.93 -0.40 0.21 16 42 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.44 3.63 8.96 -40.82 -0.37 3.26 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.92 7.69 -51.93 -0.40 1.52 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -33.00 342.72 -8.25 -41.25 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.14 Total: 6.84 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.13 Total: 2.78 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.45 Total: -51.42 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.67 Total: -20.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.00 -8.25 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048521624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.255 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds