Wall clock time and date at job start Fri Apr 10 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46805 * 299.99644 * 3 2 1 6 6 H 1.48500 * 109.46883 * 59.99756 * 3 2 1 7 7 C 1.38810 * 120.00530 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00218 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.47174 * 125.25495 * 359.13308 * 9 7 2 11 11 C 1.53691 * 107.73250 * 180.39911 * 10 9 7 12 12 H 1.09007 * 113.05539 * 254.94403 * 11 10 9 13 13 C 1.53727 * 109.34186 * 128.69723 * 11 10 9 14 14 N 1.46669 * 107.94267 * 266.25435 * 13 11 10 15 15 C 1.34774 * 125.34006 * 180.54319 * 14 13 11 16 16 O 1.21276 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00206 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47354 * 180.02562 * 17 15 14 19 19 C 1.46084 * 118.72703 * 269.97723 * 18 17 15 20 20 C 1.53021 * 109.92238 * 161.66207 * 19 18 17 21 21 O 1.43244 * 108.66985 * 49.16170 * 20 19 18 22 22 C 1.42958 * 112.98977 * 291.63677 * 21 20 19 23 23 C 1.33872 * 118.72935 * 89.99867 * 18 17 15 24 24 O 1.21283 * 118.83444 * 2.14491 * 23 18 17 25 25 C 1.46776 * 109.32101 * 0.80328 * 14 13 11 26 26 C 1.54166 * 106.52847 * 341.09531 * 25 14 13 27 27 H 1.09000 * 113.23396 * 266.01785 * 26 25 14 28 28 C 1.46744 * 125.32834 * 179.97438 * 9 7 2 29 29 H 0.97003 * 120.00343 * 0.02562 * 1 2 3 30 30 H 1.08995 * 108.95233 * 61.37819 * 10 9 7 31 31 H 1.08994 * 110.83990 * 300.50078 * 10 9 7 32 32 H 1.08999 * 109.77699 * 146.62842 * 13 11 10 33 33 H 1.09002 * 109.77323 * 25.87112 * 13 11 10 34 34 H 1.09004 * 109.46725 * 59.99704 * 17 15 14 35 35 H 1.09005 * 109.46981 * 300.00440 * 17 15 14 36 36 H 1.09002 * 109.39882 * 41.52243 * 19 18 17 37 37 H 1.08999 * 109.32759 * 281.75230 * 19 18 17 38 38 H 1.09006 * 109.60599 * 289.40721 * 20 19 18 39 39 H 1.09001 * 109.74180 * 168.99738 * 20 19 18 40 40 H 1.09004 * 109.41892 * 289.49903 * 22 21 20 41 41 H 1.09000 * 109.35891 * 169.66716 * 22 21 20 42 42 H 1.09002 * 110.02759 * 100.51755 * 25 14 13 43 43 H 1.09002 * 110.02832 * 221.92557 * 25 14 13 44 44 H 1.08998 * 110.00962 * 42.34456 * 28 9 7 45 45 H 1.09001 * 110.01126 * 280.96976 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1398 -2.5229 0.0182 11 6 -0.4717 -4.0236 0.0216 12 1 -0.8299 -4.3837 -0.9429 13 6 -1.4534 -4.3253 1.1655 14 7 -0.6708 -4.7371 2.3356 15 6 -1.1833 -5.0928 3.5303 16 8 -2.3841 -5.0883 3.7006 17 6 -0.2644 -5.4971 4.6542 18 7 -1.0594 -5.8357 5.8373 19 6 -1.3797 -4.7791 6.7938 20 6 -2.5546 -5.2111 7.6739 21 8 -2.2904 -6.5254 8.1786 22 6 -2.3169 -7.5298 7.1617 23 6 -1.4639 -7.1014 6.0001 24 8 -1.1260 -7.9330 5.1845 25 6 0.7582 -4.6951 2.0034 26 6 0.8514 -4.7080 0.4646 27 1 0.9785 -5.7080 0.0499 28 6 1.9383 -3.7215 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5490 -2.0570 -0.8782 31 1 -0.5620 -2.0501 0.9048 32 1 -2.1271 -5.1298 0.8707 33 1 -2.0289 -3.4306 1.4031 34 1 0.4058 -4.6707 4.8906 35 1 0.3215 -6.3646 4.3502 36 1 -1.6469 -3.8706 6.2539 37 1 -0.5099 -4.5846 7.4212 38 1 -3.4698 -5.2238 7.0820 39 1 -2.6668 -4.5157 8.5057 40 1 -3.3427 -7.6759 6.8233 41 1 -1.9326 -8.4654 7.5678 42 1 1.2070 -3.7843 2.3998 43 1 1.2628 -5.5696 2.4143 44 1 2.7818 -3.7444 0.6904 45 1 2.2711 -3.9791 -1.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048866281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:41 Heat of formation + Delta-G solvation = -63.714376 kcal Electronic energy + Delta-G solvation = -28476.101195 eV Core-core repulsion = 24495.110739 eV Total energy + Delta-G solvation = -3980.990456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05374 -39.98955 -38.25970 -37.81021 -35.50703 -34.91971 -32.35856 -30.97270 -30.37679 -29.49194 -29.09902 -26.57133 -25.53974 -25.16772 -24.13948 -22.86145 -20.16478 -19.86058 -19.32498 -19.01103 -17.97485 -17.38546 -17.15035 -16.77864 -16.21958 -15.97746 -15.62199 -15.28108 -14.80661 -14.51873 -14.35566 -14.19976 -13.74374 -13.65080 -13.36389 -13.20291 -13.05364 -12.71738 -12.14037 -12.04472 -12.01015 -11.96221 -11.60002 -11.53230 -11.50664 -10.92977 -10.88368 -10.83268 -10.46453 -10.15284 -10.11018 -10.01896 -9.89747 -9.69918 -9.66514 -8.93216 -8.66403 -8.37096 -6.89745 -5.78133 -3.12087 2.21245 2.50488 2.73461 3.25029 3.35079 3.40932 3.42951 3.43351 4.03555 4.43629 4.44144 4.52506 4.68850 4.79767 4.82944 4.91051 5.05140 5.07843 5.13326 5.18988 5.26956 5.28019 5.42088 5.45113 5.54297 5.61284 5.65401 5.82169 5.89664 5.94111 6.13389 6.24197 6.32206 6.41942 6.50128 6.53523 6.58652 6.76946 7.07079 7.50197 7.52251 7.69908 7.75791 7.80624 8.19361 8.27916 9.15209 9.76253 10.39808 11.33341 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.003118 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.829880 B = 8978.964566 C = 9680.981452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.186 3.814 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.122 3.878 14 N -0.604 5.604 15 C 0.513 3.487 16 O -0.544 6.544 17 C 0.094 3.906 18 N -0.586 5.586 19 C 0.081 3.919 20 C 0.044 3.956 21 O -0.372 6.372 22 C 0.053 3.947 23 C 0.494 3.506 24 O -0.541 6.541 25 C 0.109 3.891 26 C -0.110 4.110 27 H 0.090 0.910 28 C 0.146 3.854 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -11.946 12.869 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.143 4.143 12 H 0.109 0.891 13 C -0.001 4.001 14 N -0.338 5.338 15 C 0.300 3.700 16 O -0.422 6.422 17 C -0.032 4.032 18 N -0.318 5.318 19 C -0.042 4.042 20 C -0.033 4.033 21 O -0.290 6.290 22 C -0.026 4.026 23 C 0.281 3.719 24 O -0.418 6.418 25 C -0.014 4.014 26 C -0.130 4.130 27 H 0.108 0.892 28 C 0.020 3.980 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.884 -12.208 12.834 17.947 hybrid contribution 0.397 1.173 -0.443 1.315 sum -2.488 -11.036 12.391 16.778 Atomic orbital electron populations 1.69964 1.04881 1.24994 1.56961 1.24802 0.95707 0.97717 1.02107 0.86052 0.78719 0.83759 0.77256 1.20488 1.21731 1.21799 1.19081 0.90466 0.82299 1.43951 0.90312 1.44368 1.01463 0.99940 1.87284 1.21202 0.84458 0.86700 1.01533 1.23164 0.93780 1.00476 0.96892 0.89077 1.21819 0.94021 0.99629 0.84600 1.48256 1.08446 1.65659 1.11444 1.20585 0.89294 0.77416 0.82706 1.90661 1.15472 1.54155 1.81884 1.21359 0.93338 1.03785 0.84723 1.47045 1.53608 1.08684 1.22509 1.22212 0.99329 0.91306 0.91322 1.23017 0.96653 0.84814 0.98783 1.88169 1.92239 1.16093 1.32492 1.22811 0.99964 0.93251 0.86610 1.20983 0.80782 0.82048 0.88049 1.90742 1.55810 1.50358 1.44904 1.22174 0.81099 1.01745 0.96381 1.22934 0.97279 0.99240 0.93578 0.89207 1.21148 0.93619 0.85643 0.97602 0.93752 0.93522 0.93217 0.92389 0.90925 0.87165 0.86563 0.89164 0.90273 0.91344 0.86471 0.89000 0.85165 0.90147 0.91529 0.94451 0.96052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.25 55.49 0.57 -25.63 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.10 10.25 -15.06 -0.15 -6.25 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.43 3.39 -171.50 -0.58 -15.01 16 10 C 0.19 4.25 4.77 -3.31 -0.02 4.23 16 11 C -0.12 -2.17 4.01 -88.60 -0.36 -2.53 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.12 2.10 6.23 -3.57 -0.02 2.08 16 14 N -0.60 -9.91 3.31 -172.16 -0.57 -10.48 16 15 C 0.51 8.44 7.90 -10.99 -0.09 8.35 16 16 O -0.54 -10.58 16.74 5.56 0.09 -10.49 16 17 C 0.09 1.20 4.83 -5.19 -0.03 1.18 16 18 N -0.59 -7.21 2.32 -175.79 -0.41 -7.62 16 19 C 0.08 0.74 6.63 -4.26 -0.03 0.72 16 20 C 0.04 0.35 6.90 37.17 0.26 0.61 16 21 O -0.37 -3.51 10.85 -35.23 -0.38 -3.89 16 22 C 0.05 0.51 6.98 35.83 0.25 0.76 16 23 C 0.49 6.56 7.58 -11.56 -0.09 6.48 16 24 O -0.54 -9.01 16.36 5.55 0.09 -8.92 16 25 C 0.11 1.62 5.88 -3.28 -0.02 1.60 16 26 C -0.11 -1.74 4.14 -88.24 -0.37 -2.11 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 C 0.15 2.75 6.41 -3.42 -0.02 2.73 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 31 H 0.05 1.28 6.58 -51.93 -0.34 0.94 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.38 7.44 -51.93 -0.39 0.99 16 34 H 0.11 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.12 1.48 6.96 -51.93 -0.36 1.12 16 36 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16 43 H 0.07 0.80 7.61 -51.93 -0.40 0.41 16 44 H 0.04 0.67 7.98 -51.93 -0.41 0.26 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -34.47 359.33 -8.44 -42.91 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.87 Total: -0.28 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: -0.77 Total: 17.57 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.99 Total: -58.74 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.20 Total: -23.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.47 -8.44 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048866281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.805 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds