Wall clock time and date at job start Fri Apr 10 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46805 * 299.99644 * 3 2 1 6 6 H 1.48500 * 109.46883 * 59.99756 * 3 2 1 7 7 C 1.38810 * 120.00530 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00218 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.47174 * 125.25495 * 359.13308 * 9 7 2 11 11 C 1.53691 * 107.73250 * 180.39911 * 10 9 7 12 12 H 1.09007 * 113.05539 * 254.94403 * 11 10 9 13 13 C 1.53727 * 109.34186 * 128.69723 * 11 10 9 14 14 N 1.46669 * 107.94267 * 266.25435 * 13 11 10 15 15 C 1.34774 * 125.34006 * 180.54319 * 14 13 11 16 16 O 1.21276 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00206 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47354 * 180.02562 * 17 15 14 19 19 C 1.46084 * 118.72703 * 269.97723 * 18 17 15 20 20 C 1.53021 * 109.92238 * 161.66207 * 19 18 17 21 21 O 1.43244 * 108.66985 * 49.16170 * 20 19 18 22 22 C 1.42958 * 112.98977 * 291.63677 * 21 20 19 23 23 C 1.33872 * 118.72935 * 89.99867 * 18 17 15 24 24 O 1.21283 * 118.83444 * 2.14491 * 23 18 17 25 25 C 1.46776 * 109.32101 * 0.80328 * 14 13 11 26 26 C 1.54166 * 106.52847 * 341.09531 * 25 14 13 27 27 H 1.09000 * 113.23396 * 266.01785 * 26 25 14 28 28 C 1.46744 * 125.32834 * 179.97438 * 9 7 2 29 29 H 0.97003 * 120.00343 * 0.02562 * 1 2 3 30 30 H 1.08995 * 108.95233 * 61.37819 * 10 9 7 31 31 H 1.08994 * 110.83990 * 300.50078 * 10 9 7 32 32 H 1.08999 * 109.77699 * 146.62842 * 13 11 10 33 33 H 1.09002 * 109.77323 * 25.87112 * 13 11 10 34 34 H 1.09004 * 109.46725 * 59.99704 * 17 15 14 35 35 H 1.09005 * 109.46981 * 300.00440 * 17 15 14 36 36 H 1.09002 * 109.39882 * 41.52243 * 19 18 17 37 37 H 1.08999 * 109.32759 * 281.75230 * 19 18 17 38 38 H 1.09006 * 109.60599 * 289.40721 * 20 19 18 39 39 H 1.09001 * 109.74180 * 168.99738 * 20 19 18 40 40 H 1.09004 * 109.41892 * 289.49903 * 22 21 20 41 41 H 1.09000 * 109.35891 * 169.66716 * 22 21 20 42 42 H 1.09002 * 110.02759 * 100.51755 * 25 14 13 43 43 H 1.09002 * 110.02832 * 221.92557 * 25 14 13 44 44 H 1.08998 * 110.00962 * 42.34456 * 28 9 7 45 45 H 1.09001 * 110.01126 * 280.96976 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1398 -2.5229 0.0182 11 6 -0.4717 -4.0236 0.0216 12 1 -0.8299 -4.3837 -0.9429 13 6 -1.4534 -4.3253 1.1655 14 7 -0.6708 -4.7371 2.3356 15 6 -1.1833 -5.0928 3.5303 16 8 -2.3841 -5.0883 3.7006 17 6 -0.2644 -5.4971 4.6542 18 7 -1.0594 -5.8357 5.8373 19 6 -1.3797 -4.7791 6.7938 20 6 -2.5546 -5.2111 7.6739 21 8 -2.2904 -6.5254 8.1786 22 6 -2.3169 -7.5298 7.1617 23 6 -1.4639 -7.1014 6.0001 24 8 -1.1260 -7.9330 5.1845 25 6 0.7582 -4.6951 2.0034 26 6 0.8514 -4.7080 0.4646 27 1 0.9785 -5.7080 0.0499 28 6 1.9383 -3.7215 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5490 -2.0570 -0.8782 31 1 -0.5620 -2.0501 0.9048 32 1 -2.1271 -5.1298 0.8707 33 1 -2.0289 -3.4306 1.4031 34 1 0.4058 -4.6707 4.8906 35 1 0.3215 -6.3646 4.3502 36 1 -1.6469 -3.8706 6.2539 37 1 -0.5099 -4.5846 7.4212 38 1 -3.4698 -5.2238 7.0820 39 1 -2.6668 -4.5157 8.5057 40 1 -3.3427 -7.6759 6.8233 41 1 -1.9326 -8.4654 7.5678 42 1 1.2070 -3.7843 2.3998 43 1 1.2628 -5.5696 2.4143 44 1 2.7818 -3.7444 0.6904 45 1 2.2711 -3.9791 -1.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048866281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:41 Heat of formation + Delta-G solvation = -88.315831 kcal Electronic energy + Delta-G solvation = -28477.167994 eV Core-core repulsion = 24495.110739 eV Total energy + Delta-G solvation = -3982.057255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06410 -41.26521 -39.58363 -38.74433 -36.66508 -36.34095 -34.14387 -32.30498 -31.30705 -31.09794 -30.16743 -27.78088 -27.06805 -26.64261 -24.98858 -24.31041 -21.85997 -21.01172 -20.74184 -20.00871 -18.91333 -18.81645 -18.40102 -18.04279 -17.48613 -17.02629 -16.71427 -16.36304 -16.29361 -15.85223 -15.57495 -15.41620 -15.18037 -14.68084 -14.53528 -14.44973 -14.29934 -14.04779 -13.64458 -13.46245 -13.28781 -13.11518 -13.04499 -12.80595 -12.74669 -12.68011 -12.34470 -11.94067 -11.90950 -11.86357 -11.64630 -11.54441 -11.36661 -11.26005 -10.70811 -10.58111 -9.93914 -9.71779 -8.86355 -7.83997 -5.18758 1.21986 1.46057 1.46902 1.47533 1.57615 1.60753 2.08170 2.50480 2.73279 3.23530 3.24958 3.34825 3.51240 3.65814 3.74257 3.83720 3.93280 3.99529 4.08307 4.17677 4.21747 4.28380 4.29736 4.36366 4.45362 4.50108 4.55083 4.68786 4.71514 4.76008 4.82031 4.90663 4.98988 5.05813 5.09731 5.21816 5.38603 5.50371 5.62975 5.71281 5.77629 6.17864 6.21488 6.42813 6.82254 6.99804 7.11745 7.80996 8.42874 9.26279 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.003118 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.829880 B = 8978.964566 C = 9680.981452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.200 3.800 11 C -0.113 4.113 12 H 0.111 0.889 13 C 0.127 3.873 14 N -0.607 5.607 15 C 0.507 3.493 16 O -0.581 6.581 17 C 0.099 3.901 18 N -0.589 5.589 19 C 0.075 3.925 20 C 0.044 3.956 21 O -0.374 6.374 22 C 0.058 3.942 23 C 0.484 3.516 24 O -0.582 6.582 25 C 0.111 3.889 26 C -0.095 4.095 27 H 0.130 0.870 28 C 0.141 3.859 29 H 0.244 0.756 30 H 0.005 0.995 31 H 0.010 0.990 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.149 0.851 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -13.440 14.143 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.075 3.925 11 C -0.133 4.133 12 H 0.129 0.871 13 C 0.004 3.996 14 N -0.340 5.340 15 C 0.296 3.704 16 O -0.461 6.461 17 C -0.028 4.028 18 N -0.321 5.321 19 C -0.047 4.047 20 C -0.032 4.032 21 O -0.292 6.292 22 C -0.021 4.021 23 C 0.273 3.727 24 O -0.463 6.463 25 C -0.011 4.011 26 C -0.114 4.114 27 H 0.148 0.852 28 C 0.016 3.984 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.119 0.881 41 H 0.167 0.833 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.070 0.930 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.233 -13.713 14.126 19.726 hybrid contribution -0.100 1.664 -0.859 1.875 sum -1.333 -12.049 13.267 17.972 Atomic orbital electron populations 1.70201 1.06331 1.24934 1.58701 1.25608 0.96479 1.00978 1.02937 0.85058 0.78417 0.79748 0.76415 1.18654 1.22398 1.22287 1.19490 0.91096 0.83529 1.42223 0.89519 1.44656 1.02025 1.01366 1.86992 1.20822 0.84106 0.89913 0.97634 1.22994 0.95354 0.96807 0.98129 0.87120 1.21646 0.94099 0.98801 0.85102 1.48363 1.09035 1.65322 1.11312 1.21330 0.89387 0.76485 0.83209 1.90637 1.17273 1.55739 1.82482 1.21411 0.92791 1.04777 0.83786 1.47278 1.53083 1.09193 1.22540 1.22457 1.00889 0.90226 0.91089 1.23173 0.95630 0.84820 0.99618 1.88175 1.92183 1.16528 1.32308 1.22866 0.99737 0.93933 0.85597 1.21688 0.80531 0.81944 0.88534 1.90708 1.57483 1.51504 1.46558 1.22225 0.80238 1.02688 0.95923 1.22987 0.94290 1.00036 0.94116 0.85204 1.21366 0.94804 0.83799 0.98469 0.94706 0.97722 0.97186 0.91240 0.93846 0.84510 0.86035 0.89744 0.87912 0.92258 0.83373 0.88085 0.83301 0.92017 0.87559 0.92992 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.57 10.25 21.65 0.22 -56.35 16 2 C -0.07 -3.73 5.48 84.86 0.47 -3.26 16 3 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.23 -12.47 10.25 84.03 0.86 -11.61 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -29.87 3.39 -696.50 -2.36 -32.23 16 10 C 0.20 9.49 4.77 86.48 0.41 9.91 16 11 C -0.11 -3.90 4.01 -9.49 -0.04 -3.94 16 12 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 13 C 0.13 4.38 6.23 86.59 0.54 4.92 16 14 N -0.61 -19.30 3.31 -816.99 -2.71 -22.00 16 15 C 0.51 16.32 7.90 87.66 0.69 17.01 16 16 O -0.58 -22.76 16.74 -3.02 -0.05 -22.81 16 17 C 0.10 2.35 4.83 85.63 0.41 2.76 16 18 N -0.59 -13.63 2.32 -828.96 -1.92 -15.56 16 19 C 0.08 1.24 6.63 86.47 0.57 1.81 16 20 C 0.04 0.61 6.90 71.99 0.50 1.11 16 21 O -0.37 -6.21 10.85 -148.98 -1.62 -7.83 16 22 C 0.06 1.02 6.98 71.12 0.50 1.51 16 23 C 0.48 12.30 7.58 87.69 0.66 12.96 16 24 O -0.58 -18.96 16.36 -3.04 -0.05 -19.01 16 25 C 0.11 3.03 5.88 86.72 0.51 3.54 16 26 C -0.09 -2.71 4.14 -9.25 -0.04 -2.75 16 27 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 28 C 0.14 4.98 6.41 86.65 0.56 5.53 16 29 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.00 0.25 7.40 -2.39 -0.02 0.23 16 31 H 0.01 0.55 6.58 -2.39 -0.02 0.53 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.04 1.74 7.44 -2.39 -0.02 1.73 16 34 H 0.14 2.48 8.04 -2.39 -0.02 2.47 16 35 H 0.12 2.81 6.96 -2.38 -0.02 2.80 16 36 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 39 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.94 7.76 -2.39 -0.02 1.92 16 43 H 0.11 2.11 7.61 -2.39 -0.02 2.09 16 44 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -78.18 359.33 1.14 -77.04 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.99 Total: 12.46 kcal Atomic # 6 Polarization: 32.90 SS G_CDS: 6.60 Total: 39.50 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -6.77 Total: -126.14 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -1.72 Total: -49.65 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.18 1.14 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048866281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.271 kcal (2) G-P(sol) polarization free energy of solvation -78.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds