Wall clock time and date at job start Fri Apr 10 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47104 * 270.00155 * 3 2 1 5 5 H 1.48497 * 109.47391 * 30.00062 * 3 2 1 6 6 H 1.48495 * 109.47109 * 150.00428 * 3 2 1 7 7 C 1.38811 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00247 * 195.66802 * 7 2 1 9 9 N 1.36933 * 119.99938 * 15.66781 * 7 2 1 10 10 C 1.44575 * 118.64520 * 206.48971 * 9 7 2 11 11 C 1.54864 * 109.60432 * 270.72993 * 10 9 7 12 12 C 1.47098 * 110.31922 * 288.73464 * 11 10 9 13 13 C 1.52558 * 114.32950 * 62.79815 * 12 11 10 14 14 H 1.09000 * 109.49131 * 34.97876 * 13 12 11 15 15 N 1.46504 * 109.49038 * 155.01831 * 13 12 11 16 16 C 1.34781 * 120.00122 * 205.00267 * 15 13 12 17 17 O 1.21285 * 119.99842 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99814 * 179.72723 * 16 15 13 19 19 C 1.53005 * 109.46901 * 180.27407 * 18 16 15 20 20 H 1.09003 * 110.54029 * 305.70313 * 19 18 16 21 21 C 1.54232 * 110.60388 * 182.85395 * 19 18 16 22 22 C 1.51673 * 103.37852 * 241.52106 * 21 19 18 23 23 O 1.21232 * 125.36359 * 179.97438 * 22 21 19 24 24 N 1.33880 * 109.24620 * 359.87782 * 22 21 19 25 25 C 1.33878 * 114.46984 * 0.08276 * 24 22 21 26 26 O 1.21229 * 125.39247 * 179.97438 * 25 24 22 27 27 C 1.50882 * 109.36235 * 274.98952 * 13 12 11 28 28 C 1.47607 * 118.64424 * 26.47445 * 9 7 2 29 29 H 0.97006 * 119.99964 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.45209 * 150.68761 * 10 9 7 31 31 H 1.09000 * 109.44935 * 30.76734 * 10 9 7 32 32 H 1.08998 * 109.33121 * 168.47539 * 11 10 9 33 33 H 1.08998 * 109.32816 * 48.99112 * 11 10 9 34 34 H 1.09004 * 108.50893 * 301.54424 * 12 11 10 35 35 H 1.09007 * 108.38913 * 183.96817 * 12 11 10 36 36 H 0.96994 * 119.99748 * 25.00399 * 15 13 12 37 37 H 1.08993 * 109.47052 * 300.27248 * 18 16 15 38 38 H 1.09002 * 109.47054 * 60.27840 * 18 16 15 39 39 H 1.08995 * 110.60702 * 359.97438 * 21 19 18 40 40 H 1.08997 * 110.60399 * 122.96797 * 21 19 18 41 41 H 0.96999 * 122.76487 * 180.08397 * 24 22 21 42 42 H 1.08997 * 109.36415 * 212.07549 * 27 13 12 43 43 H 1.09002 * 109.36112 * 331.68800 * 27 13 12 44 44 H 1.09000 * 108.94237 * 258.55071 * 28 9 7 45 45 H 1.09000 * 108.94818 * 17.26445 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2520 9 7 1.3637 -2.3658 -0.3213 10 6 1.8692 -3.6099 0.2143 11 6 2.9229 -4.2024 -0.7538 12 6 2.2708 -4.7061 -1.9724 13 6 1.5624 -3.6343 -2.7951 14 1 2.1220 -2.7008 -2.7352 15 7 1.4800 -4.0658 -4.1927 16 6 1.3760 -3.1497 -5.1758 17 8 1.3501 -1.9681 -4.9035 18 6 1.2974 -3.5934 -6.6139 19 6 1.1925 -2.3660 -7.5213 20 1 0.3583 -1.7345 -7.2156 21 6 1.0388 -2.7924 -8.9955 22 6 2.2685 -2.2044 -9.6610 23 8 2.5456 -2.3049 -10.8369 24 7 2.9980 -1.5553 -8.7451 25 6 2.4867 -1.5820 -7.5082 26 8 2.9822 -1.0610 -6.5321 27 6 0.1712 -3.4235 -2.2503 28 6 0.1791 -2.2983 -1.1994 29 1 -0.4850 0.8401 0.0004 30 1 1.0467 -4.3155 0.3315 31 1 2.3306 -3.4265 1.1846 32 1 3.4465 -5.0210 -0.2601 33 1 3.6413 -3.4281 -1.0229 34 1 1.5397 -5.4623 -1.6863 35 1 3.0285 -5.1781 -2.5978 36 1 1.5003 -5.0108 -4.4104 37 1 2.1937 -4.1585 -6.8692 38 1 0.4188 -4.2236 -6.7522 39 1 1.0375 -3.8789 -9.0825 40 1 0.1296 -2.3708 -9.4240 41 1 3.8287 -1.1030 -8.9601 42 1 -0.4989 -3.1518 -3.0659 43 1 -0.1798 -4.3465 -1.7888 44 1 -0.7196 -2.3784 -0.5879 45 1 0.1731 -1.3365 -1.7123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052978068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:58 Heat of formation + Delta-G solvation = -80.841151 kcal Electronic energy + Delta-G solvation = -28450.642716 eV Core-core repulsion = 24468.909587 eV Total energy + Delta-G solvation = -3981.733129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04514 -39.67978 -38.69964 -37.57594 -36.05826 -34.63206 -33.74576 -32.80579 -30.98753 -30.46461 -28.80676 -26.04627 -25.27931 -23.79258 -23.19958 -22.04246 -21.23787 -20.20420 -19.80945 -19.16243 -18.10865 -17.22356 -16.63291 -16.56697 -16.33931 -15.79901 -15.48920 -15.02175 -14.73646 -14.34405 -14.24135 -14.01146 -13.84425 -13.56976 -13.31196 -13.09375 -12.96843 -12.74260 -12.37326 -12.27343 -11.86698 -11.66373 -11.45465 -11.02293 -10.90335 -10.80524 -10.70767 -10.50183 -10.34452 -10.15185 -10.11274 -10.01827 -9.87863 -9.64406 -9.52074 -9.39680 -8.63101 -8.26058 -6.56812 -5.67005 -3.10629 1.29143 2.50720 2.53409 2.94286 3.32216 3.48916 3.55118 3.57541 3.77588 3.94883 4.09523 4.34135 4.61869 4.78397 4.96632 4.98538 5.17214 5.23802 5.25847 5.34712 5.51975 5.55114 5.62237 5.74602 5.79408 6.05629 6.16058 6.24794 6.35247 6.40266 6.48945 6.53606 6.65372 6.75405 6.82700 6.90156 7.06292 7.07670 7.13284 7.53297 7.68621 7.80693 7.83578 7.94649 8.57852 8.59309 9.35302 10.02336 10.46189 11.40508 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.003624 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.692579 B = 7725.219010 C = 8861.739239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.105 4.105 13 C 0.154 3.846 14 H 0.103 0.897 15 N -0.731 5.731 16 C 0.495 3.505 17 O -0.499 6.499 18 C -0.127 4.127 19 C -0.110 4.110 20 H 0.134 0.866 21 C -0.154 4.154 22 C 0.530 3.470 23 O -0.493 6.493 24 N -0.685 5.685 25 C 0.519 3.481 26 O -0.433 6.433 27 C -0.145 4.145 28 C 0.183 3.817 29 H 0.252 0.748 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.389 0.611 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.414 0.586 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -12.630 -16.714 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.143 4.143 13 C 0.051 3.949 14 H 0.121 0.879 15 N -0.382 5.382 16 C 0.279 3.721 17 O -0.372 6.372 18 C -0.168 4.168 19 C -0.132 4.132 20 H 0.152 0.848 21 C -0.194 4.194 22 C 0.318 3.682 23 O -0.366 6.366 24 N -0.352 5.352 25 C 0.305 3.695 26 O -0.298 6.298 27 C -0.185 4.185 28 C 0.057 3.943 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.222 0.778 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.253 0.747 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.833 -11.443 -16.496 20.094 hybrid contribution 0.864 0.570 -0.328 1.086 sum 1.697 -10.872 -16.824 20.103 Atomic orbital electron populations 1.70054 1.05217 1.25307 1.54206 1.24983 0.95233 0.98278 1.00549 0.86357 0.79058 0.83936 0.77820 1.21278 1.21881 1.20538 1.19172 0.92329 0.85061 1.42248 0.91815 1.43665 1.32384 1.01878 1.53283 1.20685 0.93861 0.88399 0.94189 1.21457 1.00375 0.99931 0.96959 1.20557 0.99032 0.97487 0.97237 1.20509 0.97574 0.99268 0.77521 0.87923 1.46272 1.75629 1.08908 1.07413 1.20311 0.78028 0.86913 0.86873 1.90893 1.46491 1.16189 1.83596 1.21614 1.05224 0.97151 0.92803 1.21838 0.98508 0.98127 0.94713 0.84789 1.22663 0.98125 1.04574 0.93990 1.20863 0.85240 0.76692 0.85373 1.90811 1.73369 1.57611 1.14790 1.44893 1.26804 1.51614 1.11877 1.20726 0.86823 0.80275 0.81719 1.90971 1.63258 1.41220 1.34358 1.22432 0.95505 1.00727 0.99845 1.20944 0.88441 0.95734 0.89140 0.93792 0.95031 0.93635 0.93114 0.91958 0.92903 0.93572 0.77830 0.88764 0.87173 0.85952 0.85788 0.74722 0.92694 0.93754 0.95773 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 11.01 55.49 0.61 -26.38 16 2 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 3 Si 0.90 22.98 29.58 -169.99 -5.03 17.95 16 4 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.26 -7.25 9.44 -15.06 -0.14 -7.39 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.77 2.27 -172.07 -0.39 -15.16 16 10 C 0.16 3.24 5.65 -4.09 -0.02 3.21 16 11 C -0.15 -2.53 5.74 -28.58 -0.16 -2.70 16 12 C -0.11 -1.60 4.69 -29.79 -0.14 -1.74 16 13 C 0.15 2.71 2.06 -69.22 -0.14 2.57 16 14 H 0.10 2.36 6.92 -51.93 -0.36 2.00 16 15 N -0.73 -9.71 4.93 -55.06 -0.27 -9.98 16 16 C 0.49 6.99 7.33 -10.98 -0.08 6.91 16 17 O -0.50 -9.93 13.42 -16.70 -0.22 -10.15 16 18 C -0.13 -1.00 5.02 -27.88 -0.14 -1.14 16 19 C -0.11 -0.91 2.69 -90.82 -0.24 -1.16 16 20 H 0.13 1.19 7.96 -51.93 -0.41 0.78 16 21 C -0.15 -0.78 6.70 -26.76 -0.18 -0.96 16 22 C 0.53 4.48 8.56 -10.91 -0.09 4.39 16 23 O -0.49 -5.74 18.02 5.60 0.10 -5.64 16 24 N -0.69 -6.17 5.48 -11.27 -0.06 -6.23 16 25 C 0.52 6.09 7.72 -11.09 -0.09 6.01 16 26 O -0.43 -7.50 15.65 -16.65 -0.26 -7.76 16 27 C -0.15 -2.76 5.39 -27.29 -0.15 -2.91 16 28 C 0.18 4.48 4.67 -2.93 -0.01 4.46 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.74 7.36 -51.93 -0.38 0.35 16 35 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.39 3.62 8.60 -40.82 -0.35 3.27 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.34 7.74 -51.93 -0.40 -0.06 16 40 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.41 3.29 8.96 -40.82 -0.37 2.92 16 42 H 0.05 1.03 7.85 -51.93 -0.41 0.63 16 43 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 44 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.08 2.23 6.33 -51.93 -0.33 1.90 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -37.45 360.28 -8.50 -45.95 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.72 Total: 2.27 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.68 Total: 9.71 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.38 Total: -23.56 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.45 -8.50 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052978068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -37.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds