Wall clock time and date at job start Fri Apr 10 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46978 * 269.99735 * 3 2 1 5 5 H 1.48491 * 109.47388 * 29.99856 * 3 2 1 6 6 H 1.48495 * 109.47103 * 150.00372 * 3 2 1 7 7 C 1.38811 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99725 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.47662 * 134.45431 * 180.02562 * 9 7 2 11 11 C 1.53464 * 85.97085 * 204.26499 * 10 9 7 12 12 C 1.47679 * 134.45064 * 359.96992 * 9 7 2 13 13 C 1.52882 * 113.51876 * 222.31686 * 11 10 9 14 14 N 1.47344 * 108.05014 * 276.99727 * 13 11 10 15 15 C 1.34770 * 121.04871 * 131.57058 * 14 13 11 16 16 O 1.21277 * 120.00588 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99742 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.46936 * 180.02562 * 17 15 14 19 19 H 1.09005 * 110.44075 * 303.91656 * 18 17 15 20 20 C 1.54635 * 110.48677 * 181.22874 * 18 17 15 21 21 C 1.54472 * 101.76640 * 266.12280 * 20 18 17 22 22 N 1.46766 * 105.47536 * 334.57987 * 21 20 18 23 23 C 1.34420 * 111.29877 * 17.02015 * 22 21 20 24 24 O 1.21284 * 124.94152 * 179.55251 * 23 22 21 25 25 C 1.47124 * 117.90035 * 311.60003 * 14 13 11 26 26 C 1.53230 * 108.71858 * 52.21270 * 25 14 13 27 27 O 1.42495 * 113.76362 * 91.28241 * 11 10 9 28 28 H 0.96998 * 120.00695 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.79742 * 90.00312 * 10 9 7 30 30 H 1.09004 * 113.89648 * 318.54414 * 10 9 7 31 31 H 1.08998 * 113.79034 * 41.47425 * 12 9 7 32 32 H 1.08991 * 113.79189 * 269.99510 * 12 9 7 33 33 H 1.08997 * 109.74476 * 36.63719 * 13 11 10 34 34 H 1.09000 * 109.74594 * 157.31306 * 13 11 10 35 35 H 1.08990 * 109.47358 * 300.00462 * 17 15 14 36 36 H 1.08996 * 109.46828 * 60.00848 * 17 15 14 37 37 H 1.09003 * 110.96590 * 24.24287 * 20 18 17 38 38 H 1.09001 * 110.96437 * 148.00215 * 20 18 17 39 39 H 1.09004 * 110.24753 * 215.58450 * 21 20 18 40 40 H 1.08998 * 110.32206 * 93.61906 * 21 20 18 41 41 H 0.96999 * 124.35057 * 197.03024 * 22 21 20 42 42 H 1.08998 * 109.59393 * 171.98364 * 25 14 13 43 43 H 1.09001 * 109.59118 * 292.29035 * 25 14 13 44 44 H 1.09000 * 109.48565 * 185.92239 * 26 25 14 45 45 H 1.08999 * 109.49072 * 65.85275 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7216 -3.8106 -0.0005 11 6 0.3482 -4.0808 -0.6297 12 6 -0.1043 -2.7567 0.0005 13 6 -0.3582 -5.3062 -0.0493 14 7 0.1627 -6.5013 -0.7359 15 6 0.5669 -7.5821 -0.0396 16 8 0.5046 -7.5814 1.1716 17 6 1.0964 -8.7916 -0.7661 18 6 1.4820 -9.8685 0.2500 19 1 2.2006 -9.4742 0.9685 20 6 2.0578 -11.1103 -0.4696 21 6 0.8018 -11.9965 -0.6221 22 7 -0.1024 -11.5835 0.4576 23 6 0.2528 -10.3892 0.9619 24 8 -0.3281 -9.8125 1.8569 25 6 0.2283 -6.4772 -2.2055 26 6 0.9768 -5.2140 -2.6437 27 8 0.3565 -4.0669 -2.0545 28 1 -0.4851 0.8400 0.0004 29 1 1.8395 -4.2343 0.9968 30 1 2.5596 -4.0357 -0.6603 31 1 -0.7172 -2.1425 -0.6592 32 1 -0.5292 -2.8670 0.9981 33 1 -0.1544 -5.3771 1.0191 34 1 -1.4325 -5.2247 -0.2146 35 1 0.3271 -9.1806 -1.4330 36 1 1.9738 -8.5104 -1.3485 37 1 2.4665 -10.8419 -1.4438 38 1 2.8107 -11.6032 0.1454 39 1 1.0664 -13.0481 -0.5109 40 1 0.3339 -11.8264 -1.5918 41 1 -0.8591 -12.1053 0.7675 42 1 0.7599 -7.3594 -2.5621 43 1 -0.7813 -6.4678 -2.6163 44 1 0.9417 -5.1289 -3.7298 45 1 2.0148 -5.2744 -2.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053286073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:20 Heat of formation + Delta-G solvation = -36.480544 kcal Electronic energy + Delta-G solvation = -28514.957780 eV Core-core repulsion = 24535.148272 eV Total energy + Delta-G solvation = -3979.809509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94715 -40.05950 -38.49392 -36.51194 -36.18278 -34.38445 -33.13374 -32.17229 -30.15102 -29.35640 -27.86197 -26.69341 -25.19485 -25.03622 -23.26879 -22.17807 -21.80726 -20.38243 -19.20627 -18.72631 -17.65261 -17.00589 -16.78233 -16.48217 -16.00947 -15.86764 -15.18394 -15.09636 -14.73812 -14.37467 -14.24933 -14.12129 -13.85619 -13.63192 -13.35884 -13.30175 -12.96072 -12.85649 -12.65246 -12.26998 -12.23734 -11.93189 -11.61297 -11.32440 -11.24927 -11.10142 -10.80266 -10.79291 -10.71288 -10.12607 -9.98082 -9.80003 -9.60461 -9.41841 -9.33321 -9.22198 -8.77747 -8.20807 -6.82866 -5.70632 -3.02418 2.51780 2.76900 2.97772 3.13036 3.43896 3.47959 3.50351 4.02463 4.05762 4.08889 4.32349 4.48317 4.50603 4.69639 4.85111 4.88880 4.96910 4.99896 5.08720 5.13242 5.19511 5.22098 5.29394 5.40434 5.42658 5.47220 5.63245 5.69098 5.77164 5.80587 5.90308 6.14471 6.36267 6.43194 6.55358 6.61869 6.66462 6.80537 7.01712 7.23875 7.49208 7.55540 7.86326 8.03789 8.17885 8.32672 9.09523 9.76161 10.63104 11.46891 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002808 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.546402 B = 9968.948496 C =10188.957691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.103 3.897 11 C 0.053 3.947 12 C 0.182 3.818 13 C 0.100 3.900 14 N -0.615 5.615 15 C 0.501 3.499 16 O -0.506 6.506 17 C -0.123 4.123 18 C -0.110 4.110 19 H 0.114 0.886 20 C -0.131 4.131 21 C 0.102 3.898 22 N -0.743 5.743 23 C 0.516 3.484 24 O -0.493 6.493 25 C 0.074 3.926 26 C 0.045 3.955 27 O -0.336 6.336 28 H 0.254 0.746 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.408 0.592 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -26.521 -8.013 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.024 4.024 11 C 0.011 3.989 12 C 0.056 3.944 13 C -0.022 4.022 14 N -0.351 5.351 15 C 0.288 3.712 16 O -0.380 6.380 17 C -0.163 4.163 18 C -0.132 4.132 19 H 0.132 0.868 20 C -0.169 4.169 21 C -0.023 4.023 22 N -0.402 5.402 23 C 0.301 3.699 24 O -0.364 6.364 25 C -0.049 4.049 26 C -0.033 4.033 27 O -0.253 6.253 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.650 -25.603 -6.979 26.589 hybrid contribution 0.280 0.338 0.072 0.444 sum 1.930 -25.266 -6.907 26.264 Atomic orbital electron populations 1.69794 1.04984 1.25340 1.56680 1.24763 0.95678 0.97450 1.02483 0.86112 0.78544 0.83475 0.77560 1.21557 1.21643 1.20764 1.18968 0.90177 0.81808 1.43779 0.90305 1.45756 1.01904 0.99101 1.86076 1.23030 0.94965 0.87192 0.97194 1.23771 0.97838 0.95798 0.81474 1.22211 0.88904 0.86716 0.96541 1.22253 0.98125 0.82931 0.98939 1.48207 1.64498 1.15703 1.06643 1.20497 0.78580 0.83907 0.88195 1.90847 1.53151 1.80875 1.13131 1.21559 1.03078 0.93372 0.98307 1.21738 0.97675 0.95338 0.98443 0.86831 1.22708 0.97075 0.94861 1.02266 1.22019 0.90294 0.99365 0.90642 1.46296 1.32909 1.22431 1.38531 1.20735 0.85802 0.80717 0.82674 1.90852 1.57069 1.59999 1.28509 1.22414 1.02031 0.99908 0.80597 1.22868 0.96262 0.85559 0.98643 1.88051 1.78805 1.40295 1.18167 0.93614 0.94085 0.93896 0.89686 0.93814 0.88016 0.91103 0.88911 0.87697 0.88858 0.89553 0.90410 0.91232 0.75422 0.89496 0.90669 0.88178 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.98 11.39 55.49 0.63 -27.35 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -16.19 3.70 -180.32 -0.67 -16.86 16 10 C 0.10 2.26 8.08 -3.17 -0.03 2.23 16 11 C 0.05 1.06 1.21 -90.29 -0.11 0.95 16 12 C 0.18 4.47 6.90 -3.16 -0.02 4.45 16 13 C 0.10 1.74 5.78 -3.64 -0.02 1.72 16 14 N -0.61 -8.80 3.03 -172.44 -0.52 -9.32 16 15 C 0.50 7.24 7.49 -10.99 -0.08 7.15 16 16 O -0.51 -9.64 13.17 -16.69 -0.22 -9.86 16 17 C -0.12 -1.08 3.49 -27.88 -0.10 -1.18 16 18 C -0.11 -1.00 2.57 -90.63 -0.23 -1.23 16 19 H 0.11 1.21 8.02 -51.93 -0.42 0.79 16 20 C -0.13 -0.58 6.71 -25.10 -0.17 -0.75 16 21 C 0.10 0.42 7.78 -3.12 -0.02 0.40 16 22 N -0.74 -5.79 6.24 -59.20 -0.37 -6.16 16 23 C 0.52 6.31 7.39 -10.86 -0.08 6.23 16 24 O -0.49 -8.88 15.86 -16.70 -0.26 -9.14 16 25 C 0.07 0.80 6.50 -3.58 -0.02 0.77 16 26 C 0.04 0.59 6.88 37.28 0.26 0.85 16 27 O -0.34 -6.50 10.52 -35.23 -0.37 -6.87 16 28 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 30 H 0.04 0.91 7.27 -51.93 -0.38 0.53 16 31 H 0.08 2.32 7.17 -51.93 -0.37 1.95 16 32 H 0.04 1.07 8.09 -51.93 -0.42 0.65 16 33 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.09 0.64 7.99 -51.93 -0.41 0.23 16 36 H 0.10 0.64 7.69 -51.93 -0.40 0.24 16 37 H 0.09 0.22 7.90 -51.93 -0.41 -0.19 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16 42 H 0.09 0.60 6.03 -51.93 -0.31 0.28 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.72 7.19 -51.93 -0.37 0.35 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -39.39 357.93 -9.02 -48.40 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.72 Total: -0.68 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -0.89 Total: 14.73 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.93 Total: -59.69 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.86 Total: -25.87 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.39 -9.02 -48.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053286073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.923 kcal (2) G-P(sol) polarization free energy of solvation -39.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds