Wall clock time and date at job start Fri Apr 10 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46978 * 269.99735 * 3 2 1 5 5 H 1.48491 * 109.47388 * 29.99856 * 3 2 1 6 6 H 1.48495 * 109.47103 * 150.00372 * 3 2 1 7 7 C 1.38811 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99725 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.47662 * 134.45431 * 180.02562 * 9 7 2 11 11 C 1.53464 * 85.97085 * 204.26499 * 10 9 7 12 12 C 1.47679 * 134.45064 * 359.96992 * 9 7 2 13 13 C 1.52882 * 113.51876 * 222.31686 * 11 10 9 14 14 N 1.47344 * 108.05014 * 276.99727 * 13 11 10 15 15 C 1.34770 * 121.04871 * 131.57058 * 14 13 11 16 16 O 1.21277 * 120.00588 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99742 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.46936 * 180.02562 * 17 15 14 19 19 H 1.09005 * 110.44075 * 303.91656 * 18 17 15 20 20 C 1.54635 * 110.48677 * 181.22874 * 18 17 15 21 21 C 1.54472 * 101.76640 * 266.12280 * 20 18 17 22 22 N 1.46766 * 105.47536 * 334.57987 * 21 20 18 23 23 C 1.34420 * 111.29877 * 17.02015 * 22 21 20 24 24 O 1.21284 * 124.94152 * 179.55251 * 23 22 21 25 25 C 1.47124 * 117.90035 * 311.60003 * 14 13 11 26 26 C 1.53230 * 108.71858 * 52.21270 * 25 14 13 27 27 O 1.42495 * 113.76362 * 91.28241 * 11 10 9 28 28 H 0.96998 * 120.00695 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.79742 * 90.00312 * 10 9 7 30 30 H 1.09004 * 113.89648 * 318.54414 * 10 9 7 31 31 H 1.08998 * 113.79034 * 41.47425 * 12 9 7 32 32 H 1.08991 * 113.79189 * 269.99510 * 12 9 7 33 33 H 1.08997 * 109.74476 * 36.63719 * 13 11 10 34 34 H 1.09000 * 109.74594 * 157.31306 * 13 11 10 35 35 H 1.08990 * 109.47358 * 300.00462 * 17 15 14 36 36 H 1.08996 * 109.46828 * 60.00848 * 17 15 14 37 37 H 1.09003 * 110.96590 * 24.24287 * 20 18 17 38 38 H 1.09001 * 110.96437 * 148.00215 * 20 18 17 39 39 H 1.09004 * 110.24753 * 215.58450 * 21 20 18 40 40 H 1.08998 * 110.32206 * 93.61906 * 21 20 18 41 41 H 0.96999 * 124.35057 * 197.03024 * 22 21 20 42 42 H 1.08998 * 109.59393 * 171.98364 * 25 14 13 43 43 H 1.09001 * 109.59118 * 292.29035 * 25 14 13 44 44 H 1.09000 * 109.48565 * 185.92239 * 26 25 14 45 45 H 1.08999 * 109.49072 * 65.85275 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7216 -3.8106 -0.0005 11 6 0.3482 -4.0808 -0.6297 12 6 -0.1043 -2.7567 0.0005 13 6 -0.3582 -5.3062 -0.0493 14 7 0.1627 -6.5013 -0.7359 15 6 0.5669 -7.5821 -0.0396 16 8 0.5046 -7.5814 1.1716 17 6 1.0964 -8.7916 -0.7661 18 6 1.4820 -9.8685 0.2500 19 1 2.2006 -9.4742 0.9685 20 6 2.0578 -11.1103 -0.4696 21 6 0.8018 -11.9965 -0.6221 22 7 -0.1024 -11.5835 0.4576 23 6 0.2528 -10.3892 0.9619 24 8 -0.3281 -9.8125 1.8569 25 6 0.2283 -6.4772 -2.2055 26 6 0.9768 -5.2140 -2.6437 27 8 0.3565 -4.0669 -2.0545 28 1 -0.4851 0.8400 0.0004 29 1 1.8395 -4.2343 0.9968 30 1 2.5596 -4.0357 -0.6603 31 1 -0.7172 -2.1425 -0.6592 32 1 -0.5292 -2.8670 0.9981 33 1 -0.1544 -5.3771 1.0191 34 1 -1.4325 -5.2247 -0.2146 35 1 0.3271 -9.1806 -1.4330 36 1 1.9738 -8.5104 -1.3485 37 1 2.4665 -10.8419 -1.4438 38 1 2.8107 -11.6032 0.1454 39 1 1.0664 -13.0481 -0.5109 40 1 0.3339 -11.8264 -1.5918 41 1 -0.8591 -12.1053 0.7675 42 1 0.7599 -7.3594 -2.5621 43 1 -0.7813 -6.4678 -2.6163 44 1 0.9417 -5.1289 -3.7298 45 1 2.0148 -5.2744 -2.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053286073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:19 Heat of formation + Delta-G solvation = -68.011059 kcal Electronic energy + Delta-G solvation = -28516.325046 eV Core-core repulsion = 24535.148272 eV Total energy + Delta-G solvation = -3981.176774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91344 -41.23760 -39.79300 -37.73082 -37.35436 -35.68327 -34.31987 -33.76973 -31.57196 -30.05347 -29.26189 -28.02977 -26.90374 -26.29984 -24.55998 -23.54073 -22.58129 -21.28685 -20.55265 -19.89519 -18.82922 -18.48066 -17.93961 -17.61604 -17.12738 -17.00803 -16.77605 -16.15414 -16.04960 -15.74681 -15.65531 -15.07089 -15.04468 -14.81168 -14.62595 -14.45721 -14.12738 -13.89228 -13.67689 -13.42224 -13.28694 -13.04285 -12.94758 -12.83567 -12.77017 -12.45773 -12.16123 -12.02863 -11.92453 -11.81660 -11.71615 -11.43686 -11.00508 -10.81966 -10.77417 -10.50796 -9.95154 -9.48562 -8.96711 -7.92159 -5.26907 1.43480 1.47086 1.55361 1.65255 1.73739 1.92012 2.44801 2.55115 2.70740 3.22293 3.31793 3.36437 3.50967 3.55323 3.77576 3.80306 3.90401 4.08561 4.16565 4.24918 4.33947 4.37873 4.42644 4.53688 4.54914 4.66894 4.67714 4.70940 4.72680 4.84248 4.91792 4.97562 4.99131 5.12804 5.17078 5.18915 5.27372 5.37887 5.44220 5.87458 6.04820 6.11974 6.38742 6.46004 6.87334 7.25260 7.42432 7.56321 8.49906 9.24964 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002808 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.546402 B = 9968.948496 C =10188.957691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.631 5.631 10 C 0.106 3.894 11 C 0.089 3.911 12 C 0.174 3.826 13 C 0.110 3.890 14 N -0.617 5.617 15 C 0.490 3.510 16 O -0.562 6.562 17 C -0.113 4.113 18 C -0.112 4.112 19 H 0.088 0.912 20 C -0.117 4.117 21 C 0.095 3.905 22 N -0.733 5.733 23 C 0.500 3.500 24 O -0.570 6.570 25 C 0.076 3.924 26 C 0.034 3.966 27 O -0.367 6.367 28 H 0.250 0.750 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.147 0.853 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.411 0.589 42 H 0.141 0.859 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -29.447 -11.455 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.812 3.188 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.019 4.019 11 C 0.047 3.953 12 C 0.048 3.952 13 C -0.015 4.015 14 N -0.352 5.352 15 C 0.280 3.720 16 O -0.439 6.439 17 C -0.152 4.152 18 C -0.135 4.135 19 H 0.106 0.894 20 C -0.154 4.154 21 C -0.028 4.028 22 N -0.389 5.389 23 C 0.286 3.714 24 O -0.447 6.447 25 C -0.045 4.045 26 C -0.043 4.043 27 O -0.286 6.286 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.249 0.751 42 H 0.159 0.841 43 H 0.105 0.895 44 H 0.151 0.849 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.523 -28.628 -10.503 30.697 hybrid contribution -0.282 1.135 1.103 1.608 sum 3.241 -27.492 -9.400 29.235 Atomic orbital electron populations 1.70006 1.06547 1.25804 1.57799 1.25692 0.96648 1.01025 1.02577 0.85001 0.77514 0.78628 0.77674 1.20839 1.21873 1.19413 1.19389 0.90753 0.83183 1.43371 0.89935 1.46129 1.03039 1.00354 1.86202 1.23099 0.96725 0.84695 0.97418 1.23045 0.95643 0.94282 0.82360 1.22096 0.87803 0.89341 0.95933 1.21806 0.98113 0.83757 0.97783 1.48337 1.64123 1.14470 1.08260 1.21661 0.77381 0.85039 0.87919 1.90843 1.55175 1.81908 1.16016 1.21701 1.05293 0.90174 0.98056 1.21765 0.95830 0.97445 0.98414 0.89396 1.22786 0.97130 0.92022 1.03499 1.22410 0.89467 1.00664 0.90221 1.46418 1.33053 1.20897 1.38518 1.21445 0.86424 0.81485 0.82028 1.90808 1.59599 1.62361 1.31975 1.22684 1.03237 1.00641 0.77951 1.23316 0.96129 0.84671 1.00154 1.87987 1.79700 1.43893 1.17013 0.94097 0.94407 0.92690 0.93048 0.94941 0.90477 0.90689 0.85757 0.83535 0.85188 0.89007 0.87961 0.88663 0.75107 0.84090 0.89522 0.84851 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 11.39 21.65 0.25 -59.92 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -14.27 10.70 84.03 0.90 -13.37 16 8 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.63 -35.16 3.70 -729.29 -2.70 -37.86 16 10 C 0.11 4.77 8.08 86.31 0.70 5.47 16 11 C 0.09 3.64 1.21 -10.49 -0.01 3.62 16 12 C 0.17 9.08 6.90 86.31 0.60 9.67 16 13 C 0.11 3.91 5.78 86.18 0.50 4.41 16 14 N -0.62 -16.62 3.03 -817.86 -2.48 -19.09 16 15 C 0.49 13.53 7.49 87.66 0.66 14.19 16 16 O -0.56 -22.28 13.17 18.26 0.24 -22.04 16 17 C -0.11 -1.50 3.49 29.85 0.10 -1.40 16 18 C -0.11 -1.77 2.57 -10.80 -0.03 -1.80 16 19 H 0.09 1.84 8.02 -2.38 -0.02 1.82 16 20 C -0.12 -0.45 6.71 31.65 0.21 -0.24 16 21 C 0.10 0.32 7.78 86.83 0.68 0.99 16 22 N -0.73 -9.85 6.24 -459.80 -2.87 -12.72 16 23 C 0.50 12.02 7.39 87.90 0.65 12.67 16 24 O -0.57 -21.77 15.86 18.23 0.29 -21.49 16 25 C 0.08 1.31 6.50 86.34 0.56 1.87 16 26 C 0.03 0.79 6.88 72.06 0.50 1.28 16 27 O -0.37 -14.00 10.52 -148.98 -1.57 -15.57 16 28 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.04 1.74 7.94 -2.39 -0.02 1.72 16 30 H 0.05 2.31 7.27 -2.38 -0.02 2.30 16 31 H 0.05 2.99 7.17 -2.39 -0.02 2.97 16 32 H 0.03 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.08 3.13 6.91 -2.39 -0.02 3.11 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.12 0.95 7.99 -2.39 -0.02 0.93 16 36 H 0.15 0.79 7.69 -2.39 -0.02 0.77 16 37 H 0.13 -0.36 7.90 -2.39 -0.02 -0.38 16 38 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.41 4.88 8.96 -92.71 -0.83 4.05 16 42 H 0.14 0.93 6.03 -2.39 -0.01 0.91 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.25 7.19 -2.39 -0.02 1.23 16 Total: -1.00 -96.08 357.93 -0.15 -96.23 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.18 Total: 9.00 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 6.47 Total: 33.87 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -7.80 Total: -129.59 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.04 Total: -59.09 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -96.08 -0.15 -96.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053286073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal (2) G-P(sol) polarization free energy of solvation -96.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds