Wall clock time and date at job start Fri Apr 10 2020 18:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00279 * 2 1 4 4 H 1.48499 * 109.46973 * 270.00394 * 3 2 1 5 5 H 1.48507 * 109.46897 * 29.99738 * 3 2 1 6 6 H 1.48493 * 109.47511 * 149.99992 * 3 2 1 7 7 C 1.38816 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.47668 * 134.46259 * 180.02562 * 9 7 2 11 11 C 1.53456 * 85.97772 * 155.70775 * 10 9 7 12 12 C 1.47677 * 134.45396 * 359.97438 * 9 7 2 13 13 C 1.52893 * 113.50178 * 137.66778 * 11 10 9 14 14 N 1.47338 * 108.05717 * 83.07821 * 13 11 10 15 15 C 1.34778 * 121.05205 * 228.39594 * 14 13 11 16 16 O 1.21284 * 120.00297 * 355.29999 * 15 14 13 17 17 C 1.50705 * 119.99833 * 175.30470 * 15 14 13 18 18 H 1.08997 * 109.39823 * 34.26801 * 17 15 14 19 19 C 1.53064 * 109.40315 * 154.09985 * 17 15 14 20 20 C 1.53343 * 108.42779 * 169.02603 * 19 17 15 21 21 C 1.52918 * 108.67261 * 292.46863 * 20 19 17 22 22 N 1.45746 * 110.49090 * 50.75367 * 21 20 19 23 23 C 1.33358 * 124.10336 * 340.92128 * 22 21 20 24 24 O 1.21284 * 118.24372 * 182.22091 * 23 22 21 25 25 C 1.47123 * 117.89031 * 48.37145 * 14 13 11 26 26 C 1.53224 * 108.72423 * 307.75904 * 25 14 13 27 27 O 1.42496 * 113.77118 * 268.73610 * 11 10 9 28 28 H 0.96994 * 119.99641 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.78959 * 41.43812 * 10 9 7 30 30 H 1.09004 * 113.89524 * 269.99265 * 10 9 7 31 31 H 1.09000 * 113.79281 * 90.02576 * 12 9 7 32 32 H 1.08997 * 113.79309 * 318.55797 * 12 9 7 33 33 H 1.09002 * 109.74141 * 202.71194 * 13 11 10 34 34 H 1.09001 * 109.74972 * 323.43308 * 13 11 10 35 35 H 1.09003 * 109.67416 * 288.76542 * 19 17 15 36 36 H 1.09004 * 109.67304 * 49.25320 * 19 17 15 37 37 H 1.09002 * 109.59930 * 52.22895 * 20 19 17 38 38 H 1.09004 * 109.60025 * 172.54691 * 20 19 17 39 39 H 1.08999 * 109.29724 * 171.06396 * 21 20 19 40 40 H 1.09001 * 109.30300 * 290.64346 * 21 20 19 41 41 H 0.96996 * 117.95094 * 160.92180 * 22 21 20 42 42 H 1.09002 * 109.59791 * 67.53149 * 25 14 13 43 43 H 1.09002 * 109.59335 * 187.98913 * 25 14 13 44 44 H 1.09001 * 109.49321 * 174.12391 * 26 25 14 45 45 H 1.09002 * 109.49289 * 294.17280 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.7213 -3.8107 -0.0005 11 6 0.3482 -4.0808 0.6292 12 6 -0.1043 -2.7567 0.0004 13 6 -0.3585 -5.3061 0.0487 14 7 0.1613 -6.5013 0.7359 15 6 0.5648 -7.5828 0.0402 16 8 0.4243 -7.6164 -1.1640 17 6 1.1904 -8.7505 0.7587 18 1 0.7275 -8.8625 1.7392 19 6 0.9694 -10.0269 -0.0567 20 6 1.8385 -11.1402 0.5405 21 6 3.3088 -10.7962 0.2990 22 7 3.5934 -9.4361 0.7387 23 6 2.6615 -8.5013 0.9290 24 8 3.0213 -7.3906 1.2572 25 6 0.2263 -6.4764 2.2055 26 6 0.9762 -5.2140 2.6434 27 8 0.3569 -4.0663 2.0541 28 1 -0.4849 0.8400 0.0004 29 1 2.5595 -4.0340 0.6596 30 1 1.8394 -4.2362 -0.9972 31 1 -0.5308 -2.8664 -0.9967 32 1 -0.7163 -2.1428 0.6613 33 1 -1.4327 -5.2243 0.2141 34 1 -0.1541 -5.3774 -1.0196 35 1 -0.0807 -10.3156 -0.0090 36 1 1.2555 -9.8538 -1.0941 37 1 1.6515 -11.2152 1.6118 38 1 1.5986 -12.0888 0.0601 39 1 3.9375 -11.4930 0.8534 40 1 3.5286 -10.8811 -0.7652 41 1 4.5186 -9.1957 0.9031 42 1 -0.7833 -6.4627 2.6160 43 1 0.7567 -7.3591 2.5629 44 1 0.9415 -5.1286 3.7295 45 1 2.0142 -5.2757 2.3164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053296404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:25 Heat of formation + Delta-G solvation = -39.025059 kcal Electronic energy + Delta-G solvation = -29207.866749 eV Core-core repulsion = 25227.946902 eV Total energy + Delta-G solvation = -3979.919847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24518 -39.82677 -38.46143 -36.80088 -36.10840 -34.39298 -33.41837 -32.12527 -30.47917 -29.79244 -27.80566 -26.35662 -24.96130 -24.81406 -23.22824 -23.10173 -21.84368 -20.16713 -18.98895 -18.61425 -17.73872 -17.32549 -16.75464 -16.68098 -16.15192 -15.62086 -15.17002 -15.02154 -14.72413 -14.49081 -14.32078 -14.25294 -14.01717 -13.82400 -13.66122 -13.26159 -13.20506 -12.46001 -12.44202 -12.17172 -11.97327 -11.74174 -11.71535 -11.30483 -11.25353 -11.01450 -10.76031 -10.69874 -10.61699 -10.17959 -10.01697 -9.94958 -9.57146 -9.53063 -9.39116 -9.14304 -8.72721 -8.19652 -6.76849 -5.65760 -2.96658 2.16713 2.51440 2.97516 3.10297 3.47286 3.51436 3.53981 4.11068 4.19733 4.20584 4.27148 4.32593 4.54194 4.63229 4.76568 4.89857 5.01003 5.11616 5.14613 5.24546 5.30447 5.30618 5.35920 5.40182 5.49399 5.52689 5.66986 5.80974 5.83947 5.89701 6.08776 6.17610 6.41238 6.45052 6.53558 6.63481 6.73499 6.94459 7.07240 7.29285 7.41796 7.61743 7.91151 7.95599 8.09226 8.12519 9.15179 9.81351 10.69334 11.52005 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003318 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.770971 B = 8436.001204 C = 8733.377749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.105 3.895 11 C 0.055 3.945 12 C 0.182 3.818 13 C 0.100 3.900 14 N -0.595 5.595 15 C 0.536 3.464 16 O -0.536 6.536 17 C -0.128 4.128 18 H 0.124 0.876 19 C -0.110 4.110 20 C -0.136 4.136 21 C 0.108 3.892 22 N -0.718 5.718 23 C 0.529 3.471 24 O -0.529 6.529 25 C 0.079 3.921 26 C 0.045 3.955 27 O -0.337 6.337 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -27.062 4.795 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.329 5.329 10 C -0.021 4.021 11 C 0.013 3.987 12 C 0.056 3.944 13 C -0.023 4.023 14 N -0.328 5.328 15 C 0.322 3.678 16 O -0.413 6.413 17 C -0.152 4.152 18 H 0.141 0.859 19 C -0.148 4.148 20 C -0.174 4.174 21 C -0.017 4.017 22 N -0.371 5.371 23 C 0.314 3.686 24 O -0.404 6.404 25 C -0.044 4.044 26 C -0.033 4.033 27 O -0.255 6.255 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.239 0.761 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.280 -26.019 4.403 26.420 hybrid contribution 1.001 0.569 -0.039 1.152 sum 2.281 -25.450 4.364 25.922 Atomic orbital electron populations 1.69798 1.04951 1.25220 1.56992 1.24750 0.95681 0.97381 1.02657 0.86109 0.78620 0.83522 0.77458 1.21727 1.21652 1.20697 1.18990 0.90203 0.81835 1.43375 0.90328 1.45756 1.01879 0.99213 1.86016 1.22995 0.95293 0.86731 0.97069 1.23717 0.97858 0.95382 0.81744 1.22197 0.88969 0.86747 0.96443 1.22342 0.98274 0.82976 0.98724 1.48064 1.62512 1.15066 1.07117 1.19664 0.78070 0.82849 0.87198 1.90698 1.56252 1.80442 1.13948 1.21456 0.94100 0.96670 1.03002 0.85888 1.21591 1.01353 0.91313 1.00573 1.21900 0.93731 0.99504 1.02263 1.21434 0.97213 0.82632 1.00386 1.45360 1.10382 1.12132 1.69248 1.19439 0.87582 0.84512 0.77073 1.90865 1.81416 1.21741 1.46417 1.22415 1.01462 1.00567 0.79972 1.22868 0.97320 0.84828 0.98267 1.88026 1.78971 1.40545 1.17938 0.93701 0.93446 0.94452 0.93956 0.89684 0.90723 0.88172 0.90033 0.89307 0.90798 0.89153 0.90296 0.91342 0.76063 0.90667 0.89726 0.88516 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.41 11.39 55.49 0.63 -27.78 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.50 10.70 -15.06 -0.16 -6.66 16 8 H 0.08 2.30 7.83 -52.48 -0.41 1.88 16 9 N -0.60 -16.82 3.70 -180.31 -0.67 -17.49 16 10 C 0.11 2.50 8.08 -3.17 -0.03 2.48 16 11 C 0.05 1.16 1.21 -90.32 -0.11 1.05 16 12 C 0.18 4.59 6.90 -3.19 -0.02 4.57 16 13 C 0.10 1.76 5.76 -3.64 -0.02 1.74 16 14 N -0.60 -9.17 3.02 -172.43 -0.52 -9.70 16 15 C 0.54 8.04 6.34 -10.98 -0.07 7.97 16 16 O -0.54 -9.67 15.40 5.55 0.09 -9.58 16 17 C -0.13 -1.34 1.97 -93.14 -0.18 -1.53 16 18 H 0.12 0.98 6.28 -51.93 -0.33 0.66 16 19 C -0.11 -0.86 5.07 -26.52 -0.13 -1.00 16 20 C -0.14 -0.61 6.02 -26.60 -0.16 -0.78 16 21 C 0.11 0.52 7.17 -4.49 -0.03 0.49 16 22 N -0.72 -5.90 5.45 -61.39 -0.33 -6.24 16 23 C 0.53 6.24 7.18 -11.87 -0.09 6.15 16 24 O -0.53 -8.39 15.72 5.55 0.09 -8.30 16 25 C 0.08 1.02 5.86 -3.59 -0.02 1.00 16 26 C 0.04 0.72 6.88 37.27 0.26 0.98 16 27 O -0.34 -7.05 10.52 -35.23 -0.37 -7.42 16 28 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.05 1.15 7.28 -51.93 -0.38 0.77 16 30 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.04 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.08 2.36 7.17 -51.93 -0.37 1.99 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.88 6.95 -51.93 -0.36 1.52 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.87 7.45 -51.93 -0.39 0.49 16 37 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.40 3.00 8.80 -40.82 -0.36 2.64 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.88 5.21 -51.93 -0.27 0.61 16 44 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.22 6.57 -51.93 -0.34 0.88 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -37.86 353.72 -8.20 -46.06 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.55 Total: 0.82 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -0.87 Total: 16.12 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.89 Total: -61.20 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.20 Total: -25.30 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.86 -8.20 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053296404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -37.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds