Wall clock time and date at job start Fri Apr 10 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00279 * 2 1 4 4 H 1.48499 * 109.46973 * 270.00394 * 3 2 1 5 5 H 1.48507 * 109.46897 * 29.99738 * 3 2 1 6 6 H 1.48493 * 109.47511 * 149.99992 * 3 2 1 7 7 C 1.38816 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.47668 * 134.46259 * 180.02562 * 9 7 2 11 11 C 1.53456 * 85.97772 * 155.70775 * 10 9 7 12 12 C 1.47677 * 134.45396 * 359.97438 * 9 7 2 13 13 C 1.52893 * 113.50178 * 137.66778 * 11 10 9 14 14 N 1.47338 * 108.05717 * 83.07821 * 13 11 10 15 15 C 1.34778 * 121.05205 * 228.39594 * 14 13 11 16 16 O 1.21284 * 120.00297 * 355.29999 * 15 14 13 17 17 C 1.50705 * 119.99833 * 175.30470 * 15 14 13 18 18 H 1.08997 * 109.39823 * 34.26801 * 17 15 14 19 19 C 1.53064 * 109.40315 * 154.09985 * 17 15 14 20 20 C 1.53343 * 108.42779 * 169.02603 * 19 17 15 21 21 C 1.52918 * 108.67261 * 292.46863 * 20 19 17 22 22 N 1.45746 * 110.49090 * 50.75367 * 21 20 19 23 23 C 1.33358 * 124.10336 * 340.92128 * 22 21 20 24 24 O 1.21284 * 118.24372 * 182.22091 * 23 22 21 25 25 C 1.47123 * 117.89031 * 48.37145 * 14 13 11 26 26 C 1.53224 * 108.72423 * 307.75904 * 25 14 13 27 27 O 1.42496 * 113.77118 * 268.73610 * 11 10 9 28 28 H 0.96994 * 119.99641 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.78959 * 41.43812 * 10 9 7 30 30 H 1.09004 * 113.89524 * 269.99265 * 10 9 7 31 31 H 1.09000 * 113.79281 * 90.02576 * 12 9 7 32 32 H 1.08997 * 113.79309 * 318.55797 * 12 9 7 33 33 H 1.09002 * 109.74141 * 202.71194 * 13 11 10 34 34 H 1.09001 * 109.74972 * 323.43308 * 13 11 10 35 35 H 1.09003 * 109.67416 * 288.76542 * 19 17 15 36 36 H 1.09004 * 109.67304 * 49.25320 * 19 17 15 37 37 H 1.09002 * 109.59930 * 52.22895 * 20 19 17 38 38 H 1.09004 * 109.60025 * 172.54691 * 20 19 17 39 39 H 1.08999 * 109.29724 * 171.06396 * 21 20 19 40 40 H 1.09001 * 109.30300 * 290.64346 * 21 20 19 41 41 H 0.96996 * 117.95094 * 160.92180 * 22 21 20 42 42 H 1.09002 * 109.59791 * 67.53149 * 25 14 13 43 43 H 1.09002 * 109.59335 * 187.98913 * 25 14 13 44 44 H 1.09001 * 109.49321 * 174.12391 * 26 25 14 45 45 H 1.09002 * 109.49289 * 294.17280 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.7213 -3.8107 -0.0005 11 6 0.3482 -4.0808 0.6292 12 6 -0.1043 -2.7567 0.0004 13 6 -0.3585 -5.3061 0.0487 14 7 0.1613 -6.5013 0.7359 15 6 0.5648 -7.5828 0.0402 16 8 0.4243 -7.6164 -1.1640 17 6 1.1904 -8.7505 0.7587 18 1 0.7275 -8.8625 1.7392 19 6 0.9694 -10.0269 -0.0567 20 6 1.8385 -11.1402 0.5405 21 6 3.3088 -10.7962 0.2990 22 7 3.5934 -9.4361 0.7387 23 6 2.6615 -8.5013 0.9290 24 8 3.0213 -7.3906 1.2572 25 6 0.2263 -6.4764 2.2055 26 6 0.9762 -5.2140 2.6434 27 8 0.3569 -4.0663 2.0541 28 1 -0.4849 0.8400 0.0004 29 1 2.5595 -4.0340 0.6596 30 1 1.8394 -4.2362 -0.9972 31 1 -0.5308 -2.8664 -0.9967 32 1 -0.7163 -2.1428 0.6613 33 1 -1.4327 -5.2243 0.2141 34 1 -0.1541 -5.3774 -1.0196 35 1 -0.0807 -10.3156 -0.0090 36 1 1.2555 -9.8538 -1.0941 37 1 1.6515 -11.2152 1.6118 38 1 1.5986 -12.0888 0.0601 39 1 3.9375 -11.4930 0.8534 40 1 3.5286 -10.8811 -0.7652 41 1 4.5186 -9.1957 0.9031 42 1 -0.7833 -6.4627 2.6160 43 1 0.7567 -7.3591 2.5629 44 1 0.9415 -5.1286 3.7295 45 1 2.0142 -5.2757 2.3164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053296404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:24 Heat of formation + Delta-G solvation = -69.345107 kcal Electronic energy + Delta-G solvation = -29209.181525 eV Core-core repulsion = 25227.946902 eV Total energy + Delta-G solvation = -3981.234623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27106 -41.19120 -39.77108 -37.87257 -37.43183 -35.80058 -34.38814 -34.05074 -31.68067 -30.88761 -29.37705 -27.93945 -26.92260 -25.73652 -24.65304 -23.87568 -23.49719 -21.25409 -20.40032 -19.66254 -18.84943 -18.73850 -18.20237 -17.58794 -17.56123 -17.02720 -16.85234 -16.15017 -16.06371 -15.85004 -15.69080 -15.19567 -15.09317 -14.97573 -14.90412 -14.70884 -14.34719 -14.18311 -13.90745 -13.44513 -13.21240 -12.99872 -12.83017 -12.76920 -12.48171 -12.40118 -12.25446 -12.10664 -11.94149 -11.87553 -11.73930 -11.55463 -11.03203 -10.94384 -10.82087 -10.77241 -10.05906 -9.58464 -8.98141 -7.93475 -5.27984 1.15268 1.42098 1.45807 1.54442 1.54893 1.86932 2.36501 2.43732 2.65884 3.21029 3.21667 3.30556 3.52011 3.53611 3.64798 3.75680 3.83706 3.94437 4.04786 4.12870 4.22806 4.32026 4.43638 4.49486 4.52994 4.59440 4.64860 4.68855 4.75745 4.84527 4.85930 4.95669 5.04317 5.08972 5.10854 5.16956 5.24240 5.35900 5.42550 5.79443 5.86618 6.21850 6.26613 6.35646 6.87071 6.95398 7.12661 7.54204 8.48510 9.23568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003318 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.770971 B = 8436.001204 C = 8733.377749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.985 3.015 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.631 5.631 10 C 0.108 3.892 11 C 0.085 3.915 12 C 0.179 3.821 13 C 0.109 3.891 14 N -0.600 5.600 15 C 0.529 3.471 16 O -0.574 6.574 17 C -0.121 4.121 18 H 0.155 0.845 19 C -0.109 4.109 20 C -0.128 4.128 21 C 0.099 3.901 22 N -0.708 5.708 23 C 0.522 3.478 24 O -0.581 6.581 25 C 0.084 3.916 26 C 0.039 3.961 27 O -0.364 6.364 28 H 0.252 0.748 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.406 0.594 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -29.944 6.188 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.357 5.357 10 C -0.018 4.018 11 C 0.043 3.957 12 C 0.054 3.946 13 C -0.015 4.015 14 N -0.332 5.332 15 C 0.317 3.683 16 O -0.453 6.453 17 C -0.144 4.144 18 H 0.172 0.828 19 C -0.147 4.147 20 C -0.165 4.165 21 C -0.024 4.024 22 N -0.359 5.359 23 C 0.307 3.693 24 O -0.461 6.461 25 C -0.038 4.038 26 C -0.037 4.037 27 O -0.283 6.283 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.243 0.757 42 H 0.121 0.879 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.483 -28.995 5.805 29.607 hybrid contribution 1.014 1.386 -0.479 1.783 sum 2.496 -27.609 5.326 28.228 Atomic orbital electron populations 1.69989 1.06372 1.25896 1.57526 1.25664 0.96724 1.00829 1.02329 0.85000 0.77557 0.78631 0.77606 1.20999 1.21349 1.19610 1.19350 0.90589 0.83322 1.43863 0.90571 1.46119 1.03263 1.00091 1.86260 1.23013 0.96821 0.84973 0.96949 1.23123 0.95347 0.94933 0.82275 1.22102 0.87499 0.88771 0.96244 1.22000 0.98940 0.82741 0.97795 1.48164 1.62451 1.14334 1.08225 1.20489 0.77146 0.83633 0.87003 1.90676 1.57481 1.81384 1.15793 1.21515 0.93030 0.95474 1.04429 0.82771 1.21633 1.03006 0.91119 0.98920 1.21933 0.92267 0.99060 1.03267 1.21781 0.98471 0.81109 1.01063 1.45442 1.10009 1.13014 1.67421 1.19711 0.88477 0.84339 0.76745 1.90856 1.82234 1.23826 1.49163 1.22568 1.02947 0.99927 0.78318 1.23145 0.96107 0.84822 0.99661 1.87966 1.79480 1.43509 1.17297 0.93931 0.94438 0.94686 0.94043 0.92700 0.88685 0.89695 0.88742 0.91833 0.89173 0.86581 0.87065 0.91130 0.75740 0.87891 0.86619 0.85444 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.20 11.39 21.65 0.25 -59.96 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -15.11 10.70 84.04 0.90 -14.21 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.63 -36.75 3.70 -729.23 -2.70 -39.45 16 10 C 0.11 5.38 8.08 86.30 0.70 6.07 16 11 C 0.09 3.71 1.21 -10.50 -0.01 3.70 16 12 C 0.18 9.46 6.90 86.29 0.60 10.06 16 13 C 0.11 3.88 5.76 86.18 0.50 4.38 16 14 N -0.60 -17.87 3.02 -817.84 -2.47 -20.34 16 15 C 0.53 15.40 6.34 87.66 0.56 15.96 16 16 O -0.57 -20.84 15.40 -3.04 -0.05 -20.89 16 17 C -0.12 -2.25 1.97 -12.43 -0.02 -2.28 16 18 H 0.16 1.83 6.28 -2.39 -0.01 1.81 16 19 C -0.11 -1.41 5.07 30.73 0.16 -1.26 16 20 C -0.13 -0.61 6.02 30.68 0.18 -0.43 16 21 C 0.10 0.61 7.17 86.49 0.62 1.23 16 22 N -0.71 -10.17 5.45 -467.33 -2.55 -12.71 16 23 C 0.52 11.55 7.18 87.71 0.63 12.18 16 24 O -0.58 -18.33 15.72 -3.04 -0.05 -18.38 16 25 C 0.08 1.96 5.86 86.34 0.51 2.47 16 26 C 0.04 1.23 6.88 72.06 0.50 1.72 16 27 O -0.36 -15.37 10.52 -148.98 -1.57 -16.94 16 28 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.04 1.91 7.28 -2.39 -0.02 1.90 16 30 H 0.04 1.76 7.94 -2.38 -0.02 1.74 16 31 H 0.04 2.16 8.09 -2.39 -0.02 2.14 16 32 H 0.05 3.20 7.17 -2.39 -0.02 3.18 16 33 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.08 3.30 6.95 -2.39 -0.02 3.28 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.17 7.45 -2.38 -0.02 1.15 16 37 H 0.09 0.22 8.12 -2.39 -0.02 0.20 16 38 H 0.12 0.05 8.14 -2.38 -0.02 0.04 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.41 5.44 8.80 -92.71 -0.82 4.62 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 1.99 5.21 -2.39 -0.01 1.98 16 44 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.04 1.54 6.57 -2.39 -0.02 1.53 16 Total: -1.00 -87.28 353.72 -0.63 -87.92 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.21 Total: 13.89 kcal Atomic # 6 Polarization: 30.00 SS G_CDS: 6.27 Total: 36.26 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -7.47 Total: -132.46 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -1.66 Total: -56.20 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -87.28 -0.63 -87.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053296404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.572 kcal (2) G-P(sol) polarization free energy of solvation -87.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds