Wall clock time and date at job start Fri Apr 10 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47185 * 135.99913 * 359.63020 * 9 7 2 11 11 C 1.53198 * 87.73826 * 153.40659 * 10 9 7 12 12 C 1.47163 * 136.00267 * 180.02562 * 9 7 2 13 13 C 1.52781 * 113.88516 * 139.44195 * 11 10 9 14 14 N 1.47365 * 108.04932 * 181.34802 * 13 11 10 15 15 C 1.34777 * 121.05837 * 131.77748 * 14 13 11 16 16 O 1.21280 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99442 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.29876 * 319.99564 * 17 15 14 19 19 C 1.52923 * 109.30183 * 79.58457 * 17 15 14 20 20 C 1.53275 * 108.70852 * 171.25757 * 19 17 15 21 21 C 1.53065 * 108.24980 * 292.18204 * 20 19 17 22 22 C 1.50176 * 109.88819 * 48.96774 * 21 20 19 23 23 O 1.21285 * 118.23920 * 162.39797 * 22 21 20 24 24 N 1.33349 * 123.51354 * 342.41655 * 22 21 20 25 25 C 1.47128 * 117.87529 * 311.76177 * 14 13 11 26 26 C 1.53222 * 108.73809 * 52.28612 * 25 14 13 27 27 O 1.42362 * 114.55267 * 271.98781 * 11 10 9 28 28 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.49004 * 268.10130 * 10 9 7 30 30 H 1.09000 * 113.48366 * 38.60742 * 10 9 7 31 31 H 1.08998 * 113.48787 * 321.38209 * 12 9 7 32 32 H 1.08998 * 113.49654 * 91.83768 * 12 9 7 33 33 H 1.08998 * 109.74763 * 300.99046 * 13 11 10 34 34 H 1.08999 * 109.74932 * 61.71427 * 13 11 10 35 35 H 1.08993 * 109.59936 * 290.81550 * 19 17 15 36 36 H 1.08996 * 109.60447 * 51.30837 * 19 17 15 37 37 H 1.08999 * 109.70216 * 172.53439 * 20 19 17 38 38 H 1.09001 * 109.84929 * 51.91672 * 20 19 17 39 39 H 1.09000 * 109.39913 * 288.84359 * 21 20 19 40 40 H 1.09001 * 109.40160 * 169.09884 * 21 20 19 41 41 H 0.96992 * 117.94884 * 182.24233 * 24 22 21 42 42 H 1.08997 * 109.59077 * 292.50575 * 25 14 13 43 43 H 1.09000 * 109.58877 * 172.06402 * 25 14 13 44 44 H 1.09009 * 109.48949 * 185.84295 * 26 25 14 45 45 H 1.09003 * 109.51420 * 65.78328 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0893 -2.7937 0.0067 11 6 0.3425 -4.0908 -0.6847 12 6 1.6815 -3.8160 0.0015 13 6 -0.3760 -5.3361 -0.1680 14 7 0.1564 -6.5040 -0.8921 15 6 0.5420 -7.6144 -0.2328 16 8 0.4539 -7.6634 0.9758 17 6 1.0825 -8.7952 -0.9975 18 1 0.5026 -8.9290 -1.9107 19 6 2.5451 -8.5355 -1.3608 20 6 3.1436 -9.8220 -1.9403 21 6 3.2239 -10.8608 -0.8189 22 6 1.9079 -10.9387 -0.0996 23 8 1.6861 -11.9136 0.5870 24 7 0.9702 -9.9936 -0.1755 25 6 0.2531 -6.4191 -2.3577 26 6 1.0156 -5.1425 -2.7276 27 8 0.3863 -4.0174 -2.1058 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4926 -2.9483 1.0074 30 1 -0.7254 -2.1606 -0.6119 31 1 2.5449 -4.0489 -0.6217 32 1 1.7547 -4.2450 1.0008 33 1 -0.1928 -5.4503 0.9004 34 1 -1.4468 -5.2462 -0.3510 35 1 2.6013 -7.7419 -2.1058 36 1 3.0971 -8.2421 -0.4680 37 1 4.1429 -9.6210 -2.3265 38 1 2.5086 -10.1968 -2.7430 39 1 4.0050 -10.5739 -0.1149 40 1 3.4621 -11.8355 -1.2447 41 1 0.1630 -10.1110 0.3492 42 1 -0.7474 -6.3852 -2.7887 43 1 0.7886 -7.2883 -2.7396 44 1 1.0048 -5.0132 -3.8099 45 1 2.0460 -5.2205 -2.3808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053299901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:27 Heat of formation + Delta-G solvation = -67.673896 kcal Electronic energy + Delta-G solvation = -28735.387005 eV Core-core repulsion = 24754.224851 eV Total energy + Delta-G solvation = -3981.162154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17823 -41.25809 -40.04516 -37.88046 -37.37059 -35.83950 -34.31094 -33.97075 -31.92960 -30.86096 -29.42980 -27.98568 -26.69541 -25.88177 -24.62782 -23.80228 -23.59700 -21.06298 -20.32796 -20.04123 -18.82335 -18.55586 -18.42405 -17.69023 -17.14050 -17.00977 -16.59057 -16.28563 -16.09135 -15.95027 -15.75918 -15.28638 -15.12149 -15.02466 -14.85516 -14.56814 -14.48337 -14.13998 -13.92708 -13.37211 -13.12069 -12.98595 -12.83781 -12.73488 -12.63440 -12.53075 -12.11370 -11.99743 -11.94915 -11.87525 -11.69671 -11.49013 -11.19427 -10.98429 -10.78731 -10.70166 -10.15078 -9.60274 -8.96211 -7.92287 -5.26441 1.36562 1.43572 1.44959 1.48977 1.55060 1.74499 2.28828 2.45353 2.68990 3.18471 3.28117 3.34476 3.50227 3.56288 3.61927 3.79810 3.84603 3.95675 4.04778 4.11775 4.23003 4.34023 4.39926 4.53240 4.56389 4.65451 4.69214 4.71874 4.77562 4.81735 4.89158 4.91858 5.02818 5.10735 5.12977 5.18855 5.24098 5.30425 5.44475 5.61708 5.87964 6.18042 6.29267 6.42673 6.86804 6.94124 7.11375 7.56455 8.54454 9.25087 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002940 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.304110 B = 9521.139543 C = 9602.458885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.292 1.292 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.234 4.234 8 H 0.084 0.916 9 N -0.631 5.631 10 C 0.166 3.834 11 C 0.083 3.917 12 C 0.104 3.896 13 C 0.112 3.888 14 N -0.602 5.602 15 C 0.502 3.498 16 O -0.576 6.576 17 C 0.132 3.868 18 H 0.142 0.858 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.135 4.135 22 C 0.518 3.482 23 O -0.609 6.609 24 N -0.701 5.701 25 C 0.069 3.931 26 C 0.034 3.966 27 O -0.363 6.363 28 H 0.250 0.750 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -20.572 -12.064 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.218 1.218 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.039 3.961 11 C 0.041 3.959 12 C -0.022 4.022 13 C -0.012 4.012 14 N -0.335 5.335 15 C 0.290 3.710 16 O -0.455 6.455 17 C 0.024 3.976 18 H 0.159 0.841 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.175 4.175 22 C 0.307 3.693 23 O -0.492 6.492 24 N -0.351 5.351 25 C -0.052 4.052 26 C -0.043 4.043 27 O -0.282 6.282 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.231 0.769 42 H 0.116 0.884 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.925 -20.546 -11.344 23.795 hybrid contribution -0.219 1.243 1.239 1.769 sum 3.707 -19.303 -10.105 22.101 Atomic orbital electron populations 1.70000 1.06488 1.25861 1.57576 1.25660 0.96618 1.00906 1.02546 0.85099 0.77146 0.78447 0.78297 1.21846 1.20404 1.19940 1.19245 0.90604 0.82692 1.43620 0.89851 1.45730 1.03507 1.00365 1.86036 1.22023 0.88433 0.89870 0.95755 1.22736 0.96175 0.94433 0.82556 1.22960 0.96952 0.84919 0.97370 1.21861 0.98507 0.83147 0.97708 1.48248 1.62594 1.13868 1.08805 1.21417 0.77103 0.84610 0.87855 1.90745 1.56230 1.82359 1.16182 1.21199 1.00864 0.81589 0.93973 0.84101 1.22044 0.90655 1.01309 1.03186 1.21677 1.04438 0.91756 0.96792 1.21770 0.92300 1.04006 0.99398 1.20967 0.86771 0.80915 0.80611 1.90746 1.80482 1.33688 1.44256 1.45387 1.21477 1.20518 1.47701 1.22867 1.03967 1.00544 0.77872 1.23330 0.95968 0.84964 1.00035 1.87987 1.79584 1.44046 1.16539 0.94117 0.94631 0.93353 0.93189 0.94315 0.89668 0.89339 0.86256 0.91892 0.87245 0.88453 0.87737 0.86627 0.76885 0.88359 0.84344 0.84735 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 11.51 21.65 0.25 -57.74 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.23 -13.39 10.74 84.03 0.90 -12.49 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.63 -33.17 3.78 -738.73 -2.79 -35.97 16 10 C 0.17 7.96 6.84 83.41 0.57 8.53 16 11 C 0.08 3.02 1.29 -10.82 -0.01 3.00 16 12 C 0.10 4.27 7.90 83.33 0.66 4.93 16 13 C 0.11 3.25 5.83 86.14 0.50 3.76 16 14 N -0.60 -12.63 3.03 -818.00 -2.48 -15.11 16 15 C 0.50 11.07 6.87 87.66 0.60 11.68 16 16 O -0.58 -18.66 15.89 -3.03 -0.05 -18.71 16 17 C 0.13 1.70 2.63 44.36 0.12 1.81 16 18 H 0.14 0.72 6.84 -2.39 -0.02 0.70 16 19 C -0.13 -1.17 5.05 30.66 0.15 -1.02 16 20 C -0.11 -0.50 6.04 30.71 0.19 -0.31 16 21 C -0.14 -1.51 6.02 29.71 0.18 -1.33 16 22 C 0.52 10.81 7.71 87.71 0.68 11.49 16 23 O -0.61 -18.85 17.78 -3.05 -0.05 -18.91 16 24 N -0.70 -13.12 4.79 -450.21 -2.16 -15.27 16 25 C 0.07 0.86 6.09 86.33 0.53 1.39 16 26 C 0.03 0.64 6.90 72.06 0.50 1.14 16 27 O -0.36 -12.37 10.55 -148.98 -1.57 -13.94 16 28 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 29 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 30 H 0.05 2.65 7.13 -2.39 -0.02 2.63 16 31 H 0.05 1.93 7.36 -2.39 -0.02 1.91 16 32 H 0.04 1.61 7.93 -2.39 -0.02 1.60 16 33 H 0.08 2.82 6.89 -2.39 -0.02 2.80 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.12 0.47 6.79 -2.39 -0.02 0.46 16 36 H 0.06 0.87 8.10 -2.39 -0.02 0.86 16 37 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.10 0.11 8.13 -2.39 -0.02 0.09 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.40 8.65 8.45 -92.71 -0.78 7.87 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.14 0.43 4.66 -2.39 -0.01 0.41 16 44 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.05 1.07 7.30 -2.39 -0.02 1.05 16 Total: -1.00 -86.10 356.29 -0.56 -86.67 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.24 Total: 11.66 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.02 Total: 29.36 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -7.18 Total: -124.08 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -1.67 Total: -51.56 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -86.10 -0.56 -86.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053299901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.992 kcal (2) G-P(sol) polarization free energy of solvation -86.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds