Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47112 * 274.96957 * 3 2 1 5 5 H 1.48500 * 109.47412 * 34.97410 * 3 2 1 6 6 H 1.48505 * 109.46978 * 154.97400 * 3 2 1 7 7 C 1.38821 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99711 * 187.69831 * 7 2 1 9 9 N 1.36929 * 119.99997 * 7.69820 * 7 2 1 10 10 C 1.47674 * 134.46378 * 177.00382 * 9 7 2 11 11 C 1.53456 * 85.98086 * 204.29594 * 10 9 7 12 12 C 1.47675 * 134.46259 * 357.00200 * 9 7 2 13 13 C 1.52896 * 113.50534 * 222.31872 * 11 10 9 14 14 N 1.47637 * 108.14428 * 276.95942 * 13 11 10 15 15 C 1.34780 * 121.24627 * 131.59951 * 14 13 11 16 16 O 1.21278 * 119.99922 * 356.62844 * 15 14 13 17 17 C 1.50699 * 119.99815 * 176.62653 * 15 14 13 18 18 H 1.09003 * 109.60500 * 52.68580 * 17 15 14 19 19 C 1.53350 * 109.60320 * 173.01101 * 17 15 14 20 20 C 1.53026 * 108.43897 * 187.14436 * 19 17 15 21 21 C 1.50175 * 110.00050 * 311.33774 * 20 19 17 22 22 O 1.21281 * 118.24323 * 197.45173 * 21 20 19 23 23 N 1.33352 * 123.51103 * 17.46454 * 21 20 19 24 24 C 1.45753 * 124.10345 * 357.80854 * 23 21 20 25 25 C 1.47117 * 117.70053 * 311.71661 * 14 13 11 26 26 C 1.53226 * 108.85788 * 52.15182 * 25 14 13 27 27 O 1.42486 * 113.76804 * 91.27386 * 11 10 9 28 28 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.78576 * 90.02725 * 10 9 7 30 30 H 1.08998 * 113.78643 * 318.56771 * 10 9 7 31 31 H 1.08999 * 113.79255 * 41.43361 * 12 9 7 32 32 H 1.08996 * 113.79090 * 269.96635 * 12 9 7 33 33 H 1.09005 * 109.73864 * 36.58780 * 13 11 10 34 34 H 1.08993 * 109.74032 * 157.25487 * 13 11 10 35 35 H 1.09006 * 109.67165 * 307.02223 * 19 17 15 36 36 H 1.08997 * 109.67516 * 67.55137 * 19 17 15 37 37 H 1.09003 * 109.43822 * 191.11653 * 20 19 17 38 38 H 1.09004 * 109.25675 * 71.44080 * 20 19 17 39 39 H 0.96993 * 117.94965 * 177.77786 * 23 21 20 40 40 H 1.09003 * 109.29924 * 258.73674 * 24 23 21 41 41 H 1.08999 * 109.30022 * 139.35868 * 24 23 21 42 42 H 1.09003 * 109.59707 * 292.29931 * 25 14 13 43 43 H 1.08998 * 109.59316 * 172.00165 * 25 14 13 44 44 H 1.09000 * 109.49357 * 65.75632 * 26 25 14 45 45 H 1.08996 * 109.49180 * 185.84194 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5042 2.6201 0.8025 6 1 3.5963 1.4120 0.5923 7 6 2.0102 -1.2023 0.0005 8 1 3.0828 -1.2064 0.1258 9 7 1.3347 -2.3828 -0.1578 10 6 1.7382 -3.7996 -0.2612 11 6 0.4149 -4.0097 -1.0094 12 6 -0.0893 -2.7496 -0.2935 13 6 -0.3233 -5.2835 -0.5967 14 7 0.2518 -6.4136 -1.3528 15 6 0.6120 -7.5564 -0.7358 16 8 0.5231 -7.6485 0.4702 17 6 1.1253 -8.7199 -1.5446 18 1 1.9425 -8.3879 -2.1850 19 6 1.6252 -9.8211 -0.6018 20 6 2.3013 -10.9071 -1.4416 21 6 1.4177 -11.2898 -2.5940 22 8 1.6395 -12.3370 -3.1642 23 7 0.4025 -10.5397 -3.0241 24 6 -0.0051 -9.2841 -2.4062 25 6 0.4213 -6.2492 -2.8050 26 6 1.1918 -4.9515 -3.0699 27 8 0.5246 -3.8635 -2.4224 28 1 -0.4850 0.8401 -0.0004 29 1 1.7873 -4.3139 0.6985 30 1 2.6224 -3.9609 -0.8778 31 1 -0.6575 -2.0767 -0.9357 32 1 -0.5837 -2.9518 0.6566 33 1 -0.1948 -5.4535 0.4723 34 1 -1.3836 -5.1862 -0.8292 35 1 2.3413 -9.4019 0.1050 36 1 0.7826 -10.2507 -0.0599 37 1 2.4861 -11.7836 -0.8204 38 1 3.2497 -10.5285 -1.8227 39 1 -0.0957 -10.8488 -3.7968 40 1 -0.8816 -9.4577 -1.7820 41 1 -0.2579 -8.5647 -3.1850 42 1 -0.5567 -6.1978 -3.2837 43 1 0.9804 -7.0946 -3.2057 44 1 2.2043 -5.0429 -2.6767 45 1 1.2333 -4.7658 -4.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053323655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = -72.353064 kcal Electronic energy + Delta-G solvation = -28550.590412 eV Core-core repulsion = 24569.225354 eV Total energy + Delta-G solvation = -3981.365058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06580 -41.17638 -40.08582 -37.77331 -37.31128 -35.77949 -34.28170 -33.99877 -31.88295 -30.90230 -29.33415 -27.69405 -26.87385 -25.73819 -24.63381 -24.35743 -23.26730 -21.14811 -20.29927 -19.76623 -18.82020 -18.65673 -18.01807 -17.53984 -17.20094 -17.03891 -16.76264 -16.24817 -16.19918 -15.90600 -15.68970 -15.23040 -15.07102 -15.04184 -14.87696 -14.67722 -14.39419 -14.13954 -13.79727 -13.36368 -13.06462 -13.02209 -12.87966 -12.80246 -12.78257 -12.44587 -12.27722 -12.08166 -11.94961 -11.90902 -11.70823 -11.44685 -11.00154 -10.85005 -10.78807 -10.74221 -10.13834 -9.54044 -8.95545 -7.93056 -5.24673 1.44591 1.47082 1.48418 1.55526 1.59976 1.76703 2.29982 2.45449 2.71210 3.25814 3.26051 3.32183 3.50965 3.56801 3.63635 3.68644 3.81031 3.96194 4.10010 4.16597 4.24107 4.31537 4.39449 4.43465 4.52461 4.57677 4.68552 4.71205 4.73500 4.75486 4.86795 4.91803 4.97673 5.01348 5.15054 5.17556 5.22785 5.30561 5.47382 5.80895 5.89602 6.25012 6.33231 6.42120 6.89202 7.06463 7.18021 7.57839 8.51338 9.24613 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.002747 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.512183 B =10188.810373 C =10306.315072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.633 5.633 10 C 0.103 3.897 11 C 0.086 3.914 12 C 0.175 3.825 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.526 3.474 16 O -0.572 6.572 17 C -0.118 4.118 18 H 0.131 0.869 19 C -0.100 4.100 20 C -0.128 4.128 21 C 0.517 3.483 22 O -0.606 6.606 23 N -0.706 5.706 24 C 0.121 3.879 25 C 0.071 3.929 26 C 0.033 3.967 27 O -0.366 6.366 28 H 0.250 0.750 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.409 0.591 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.048 0.952 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -20.590 -8.845 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.359 5.359 10 C -0.022 4.022 11 C 0.044 3.956 12 C 0.049 3.951 13 C -0.015 4.015 14 N -0.341 5.341 15 C 0.315 3.685 16 O -0.450 6.450 17 C -0.140 4.140 18 H 0.149 0.851 19 C -0.138 4.138 20 C -0.168 4.168 21 C 0.306 3.694 22 O -0.488 6.488 23 N -0.357 5.357 24 C -0.004 4.004 25 C -0.051 4.051 26 C -0.044 4.044 27 O -0.285 6.285 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.149 0.851 44 H 0.067 0.933 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.117 -20.593 -8.367 22.228 hybrid contribution 0.178 1.155 0.344 1.218 sum 0.295 -19.438 -8.023 21.031 Atomic orbital electron populations 1.69991 1.06410 1.25783 1.57661 1.25611 0.96580 1.00794 1.02606 0.85057 0.77770 0.79077 0.77378 1.21260 1.21908 1.19367 1.19350 0.91306 0.83493 1.42502 0.90224 1.46188 1.03559 1.00773 1.85427 1.23153 0.97022 0.84984 0.97059 1.23073 0.95616 0.94482 0.82385 1.22119 0.87586 0.90149 0.95225 1.22006 0.97899 0.83776 0.97789 1.48354 1.62229 1.14023 1.09511 1.20736 0.76525 0.83486 0.87782 1.90725 1.55314 1.82779 1.16225 1.21638 1.00690 0.93314 0.98313 0.85118 1.21432 1.01527 0.93785 0.97039 1.21658 0.99255 1.01154 0.94721 1.20598 0.81061 0.82699 0.85049 1.90761 1.72270 1.26067 1.59702 1.45347 1.33008 1.23322 1.34001 1.21474 0.95546 0.85549 0.97798 1.22806 1.03535 0.99561 0.79171 1.23285 0.95268 0.86187 0.99613 1.88008 1.78333 1.44743 1.17391 0.94081 0.93888 0.93212 0.93356 0.94339 0.89426 0.89123 0.89885 0.91165 0.87259 0.86211 0.75363 0.90746 0.86586 0.87928 0.85096 0.93334 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 11.45 21.65 0.25 -57.45 16 2 C -0.06 -3.62 5.50 84.87 0.47 -3.15 16 3 Si 0.98 46.18 29.56 68.60 2.03 48.21 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -13.71 10.69 84.04 0.90 -12.81 16 8 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 9 N -0.63 -33.22 3.70 -729.02 -2.70 -35.92 16 10 C 0.10 4.25 8.08 86.30 0.70 4.94 16 11 C 0.09 3.12 1.21 -10.49 -0.01 3.10 16 12 C 0.17 8.33 6.90 86.30 0.60 8.93 16 13 C 0.11 3.05 5.80 86.13 0.50 3.55 16 14 N -0.61 -12.20 3.04 -817.09 -2.48 -14.68 16 15 C 0.53 10.58 7.00 87.66 0.61 11.19 16 16 O -0.57 -16.71 15.50 -3.02 -0.05 -16.76 16 17 C -0.12 -1.34 1.73 -11.45 -0.02 -1.36 16 18 H 0.13 0.92 7.13 -2.39 -0.02 0.90 16 19 C -0.10 -1.30 4.66 30.72 0.14 -1.15 16 20 C -0.13 -1.49 6.03 29.69 0.18 -1.31 16 21 C 0.52 8.32 7.72 87.71 0.68 9.00 16 22 O -0.61 -15.41 17.78 -3.03 -0.05 -15.46 16 23 N -0.71 -7.16 5.45 -467.32 -2.55 -9.71 16 24 C 0.12 0.91 6.15 86.49 0.53 1.44 16 25 C 0.07 0.91 5.30 86.34 0.46 1.36 16 26 C 0.03 0.68 6.89 72.06 0.50 1.18 16 27 O -0.37 -12.55 10.52 -148.98 -1.57 -14.12 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.04 1.76 7.94 -2.39 -0.02 1.75 16 30 H 0.05 1.96 7.28 -2.39 -0.02 1.95 16 31 H 0.05 2.62 7.23 -2.39 -0.02 2.60 16 32 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.09 2.76 6.91 -2.38 -0.02 2.75 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 1.23 8.01 -2.38 -0.02 1.21 16 36 H 0.07 1.06 8.13 -2.39 -0.02 1.05 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.41 3.37 8.80 -92.71 -0.82 2.55 16 40 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 41 H 0.12 0.27 6.07 -2.39 -0.01 0.26 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 0.63 4.98 -2.39 -0.01 0.62 16 44 H 0.05 1.06 7.20 -2.39 -0.02 1.04 16 45 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -82.36 354.70 -0.69 -83.05 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.21 Total: 7.92 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.22 Total: 24.91 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -7.48 Total: -117.76 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.67 Total: -46.33 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -82.36 -0.69 -83.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053323655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.697 kcal (2) G-P(sol) polarization free energy of solvation -82.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds