Wall clock time and date at job start Fri Apr 10 2020 18:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48505 * 109.47236 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47122 * 299.99953 * 3 2 1 6 6 H 1.48501 * 109.46959 * 59.99889 * 3 2 1 7 7 C 1.38812 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00466 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.47674 * 134.45680 * 180.02562 * 9 7 2 11 11 C 1.53439 * 85.97859 * 204.31109 * 10 9 7 12 12 C 1.47670 * 134.45813 * 0.02562 * 9 7 2 13 13 C 1.52888 * 113.55703 * 222.36843 * 11 10 9 14 14 N 1.47339 * 108.05014 * 180.02562 * 13 11 10 15 15 C 1.34778 * 121.05888 * 228.41577 * 14 13 11 16 16 O 1.21282 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00383 * 179.97438 * 15 14 13 18 18 H 1.09003 * 112.84938 * 311.20229 * 17 15 14 19 19 C 1.53783 * 113.61301 * 82.50550 * 17 15 14 20 20 C 1.53779 * 87.07830 * 139.98250 * 19 17 15 21 21 C 1.53777 * 87.08313 * 334.56615 * 20 19 17 22 22 H 1.09002 * 113.61923 * 270.88313 * 21 20 19 23 23 C 1.50703 * 113.69058 * 139.99267 * 21 20 19 24 24 N 1.34782 * 120.00003 * 82.46728 * 23 21 20 25 25 O 1.21280 * 119.99987 * 262.46881 * 23 21 20 26 26 C 1.47186 * 117.90327 * 48.39611 * 14 13 11 27 27 C 1.53233 * 108.69501 * 307.78869 * 26 14 13 28 28 O 1.42493 * 113.81341 * 91.23726 * 11 10 9 29 29 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.08992 * 113.79790 * 90.04185 * 10 9 7 31 31 H 1.09004 * 113.78459 * 318.57231 * 10 9 7 32 32 H 1.09003 * 113.78718 * 41.43526 * 12 9 7 33 33 H 1.08996 * 113.79857 * 269.95919 * 12 9 7 34 34 H 1.09009 * 109.74782 * 299.66648 * 13 11 10 35 35 H 1.08998 * 109.74853 * 60.34006 * 13 11 10 36 36 H 1.08995 * 113.61373 * 254.53065 * 19 17 15 37 37 H 1.08999 * 113.61329 * 25.43385 * 19 17 15 38 38 H 1.09002 * 113.61026 * 220.01788 * 20 19 17 39 39 H 1.08999 * 113.69521 * 89.12818 * 20 19 17 40 40 H 0.96998 * 119.99463 * 359.97438 * 24 23 21 41 41 H 0.96997 * 119.99566 * 180.02562 * 24 23 21 42 42 H 1.08999 * 109.63179 * 188.01761 * 26 14 13 43 43 H 1.08998 * 109.59259 * 67.54141 * 26 14 13 44 44 H 1.09002 * 109.49338 * 294.14468 * 27 26 14 45 45 H 1.08996 * 109.49000 * 174.09128 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7212 -3.8108 -0.0019 11 6 0.3490 -4.0806 -0.6333 12 6 -0.1044 -2.7567 -0.0029 13 6 -0.3597 -5.3054 -0.0545 14 7 -1.6547 -5.4509 -0.7421 15 6 -2.7935 -5.6419 -0.0470 16 8 -2.7627 -5.6960 1.1642 17 6 -4.1052 -5.7872 -0.7747 18 1 -4.2636 -5.0087 -1.5210 19 6 -4.3638 -7.2090 -1.3004 20 6 -5.8270 -7.0181 -0.8678 21 6 -5.3079 -5.9986 0.1599 22 1 -5.0426 -6.4423 1.1195 23 6 -6.1844 -4.7808 0.3007 24 7 -7.2760 -4.8238 1.0902 25 8 -5.9076 -3.7622 -0.2964 26 6 -1.6657 -5.3806 -2.2122 27 6 -0.9452 -4.1004 -2.6482 28 8 0.3581 -4.0650 -2.0581 29 1 -0.4850 0.8400 -0.0004 30 1 1.8376 -4.2352 0.9952 31 1 2.5600 -4.0337 -0.6614 32 1 -0.7163 -2.1421 -0.6631 33 1 -0.5309 -2.8676 0.9940 34 1 0.2476 -6.1952 -0.2208 35 1 -0.5231 -5.1657 1.0141 36 1 -4.2363 -7.3058 -2.3785 37 1 -3.8403 -7.9836 -0.7400 38 1 -6.2684 -7.9067 -0.4166 39 1 -6.4581 -6.5774 -1.6396 40 1 -7.4975 -5.6387 1.5674 41 1 -7.8403 -4.0400 1.1805 42 1 -2.6950 -5.3608 -2.5703 43 1 -1.1500 -6.2484 -2.6235 44 1 -1.5167 -3.2319 -2.3205 45 1 -0.8532 -4.0867 -3.7342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053373563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:41 Heat of formation + Delta-G solvation = -24.899946 kcal Electronic energy + Delta-G solvation = -28825.763269 eV Core-core repulsion = 24846.455933 eV Total energy + Delta-G solvation = -3979.307336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07119 -39.85858 -38.60919 -37.02119 -36.14806 -34.36247 -33.76255 -32.20208 -30.02585 -28.32821 -27.12242 -26.98711 -25.30565 -25.00049 -23.24061 -22.02147 -21.49107 -20.04728 -19.06474 -18.70592 -18.04397 -17.26363 -16.73121 -16.60911 -16.16016 -15.64138 -15.31028 -14.95818 -14.71821 -14.60321 -14.32298 -14.14371 -13.98631 -13.41413 -13.25649 -13.13484 -12.96381 -12.59323 -12.31521 -12.19412 -11.90116 -11.73725 -11.30021 -11.22432 -11.06417 -10.84296 -10.82282 -10.75010 -10.57587 -10.16754 -9.95933 -9.88353 -9.83744 -9.55031 -9.43977 -9.16820 -8.76682 -8.17569 -6.81068 -5.67888 -3.00717 2.50353 2.69792 3.00684 3.41257 3.44855 3.49196 3.52525 4.06652 4.12269 4.23962 4.37004 4.43529 4.50822 4.77442 4.97233 4.99808 5.10937 5.19157 5.30450 5.31790 5.36617 5.39875 5.42211 5.45619 5.51391 5.63740 5.66574 5.80053 5.89287 6.03224 6.04738 6.15166 6.34850 6.51142 6.54779 6.61851 6.63751 7.08520 7.15582 7.27744 7.50810 7.58045 7.88121 8.05072 8.14117 8.28348 9.11401 9.78234 10.64920 11.49077 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.003681 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.826536 B = 7604.745930 C = 8580.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.099 3.901 14 N -0.606 5.606 15 C 0.529 3.471 16 O -0.542 6.542 17 C -0.115 4.115 18 H 0.127 0.873 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.118 4.118 22 H 0.128 0.872 23 C 0.527 3.473 24 N -0.856 5.856 25 O -0.535 6.535 26 C 0.075 3.925 27 C 0.045 3.955 28 O -0.342 6.342 29 H 0.253 0.747 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -19.179 -3.619 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.010 3.990 11 C 0.008 3.992 12 C 0.026 3.974 13 C -0.024 4.024 14 N -0.339 5.339 15 C 0.317 3.683 16 O -0.420 6.420 17 C -0.137 4.137 18 H 0.145 0.855 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.139 4.139 22 H 0.145 0.855 23 C 0.311 3.689 24 N -0.419 5.419 25 O -0.410 6.410 26 C -0.048 4.048 27 C -0.033 4.033 28 O -0.260 6.260 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.228 0.772 41 H 0.231 0.769 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.545 -18.260 -3.546 23.010 hybrid contribution -0.197 0.998 0.547 1.155 sum -13.742 -17.262 -2.999 22.267 Atomic orbital electron populations 1.69837 1.05029 1.25167 1.56761 1.24781 0.95636 0.97491 1.02537 0.86044 0.78706 0.83797 0.77204 1.20441 1.21736 1.21818 1.19038 0.90258 0.81776 1.43604 0.90082 1.45793 1.01987 0.99117 1.86062 1.22482 0.93263 0.86799 0.96469 1.23689 0.99079 0.94586 0.81892 1.22673 0.88549 0.89012 0.97140 1.22251 0.82793 0.98355 0.98977 1.48113 1.07384 1.71428 1.06951 1.20283 0.84804 0.75653 0.87516 1.90666 1.86425 1.51026 1.13844 1.22677 0.91520 1.00241 0.99228 0.85491 1.22823 0.96190 0.94928 1.02006 1.22807 0.97020 0.98241 0.97842 1.22691 0.95077 0.95007 1.01156 0.85464 1.20442 0.80894 0.89468 0.78051 1.43832 1.29064 1.18511 1.50491 1.90787 1.71345 1.32734 1.46163 1.22463 1.02286 0.99888 0.80168 1.22887 0.85840 0.96118 0.98441 1.87923 1.25771 1.94305 1.17957 0.93727 0.93318 0.92634 0.90574 0.94958 0.91356 0.88134 0.89880 0.89171 0.89991 0.89271 0.77156 0.76917 0.89138 0.90620 0.91975 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.87 11.39 55.49 0.63 -28.24 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 7 C -0.22 -6.46 10.70 -15.06 -0.16 -6.62 16 8 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 9 N -0.60 -16.45 3.70 -180.31 -0.67 -17.11 16 10 C 0.14 2.95 8.33 -3.18 -0.03 2.92 16 11 C 0.05 1.00 1.21 -90.30 -0.11 0.89 16 12 C 0.15 3.88 6.65 -3.16 -0.02 3.86 16 13 C 0.10 1.69 5.78 -3.64 -0.02 1.67 16 14 N -0.61 -9.27 3.03 -172.38 -0.52 -9.80 16 15 C 0.53 8.27 7.24 -10.99 -0.08 8.19 16 16 O -0.54 -10.24 15.40 5.56 0.09 -10.15 16 17 C -0.12 -1.35 2.09 -90.96 -0.19 -1.54 16 18 H 0.13 1.58 6.50 -51.93 -0.34 1.24 16 19 C -0.12 -0.92 7.55 -25.92 -0.20 -1.11 16 20 C -0.12 -0.80 7.63 -25.92 -0.20 -1.00 16 21 C -0.12 -1.20 3.47 -90.96 -0.32 -1.52 16 22 H 0.13 1.32 7.43 -51.93 -0.39 0.93 16 23 C 0.53 6.40 7.63 -10.98 -0.08 6.32 16 24 N -0.86 -6.68 8.87 31.22 0.28 -6.40 16 25 O -0.53 -9.17 16.74 5.56 0.09 -9.08 16 26 C 0.08 0.93 6.51 -3.55 -0.02 0.91 16 27 C 0.04 0.70 6.88 37.28 0.26 0.96 16 28 O -0.34 -6.79 10.52 -35.23 -0.37 -7.17 16 29 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 2.18 6.31 -51.93 -0.33 1.85 16 33 H 0.03 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.40 1.79 8.83 -40.82 -0.36 1.42 16 41 H 0.40 2.85 8.93 -40.82 -0.36 2.49 16 42 H 0.09 0.88 5.80 -51.93 -0.30 0.58 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.13 7.19 -51.93 -0.37 0.76 16 45 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -39.34 362.80 -7.86 -47.19 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.56 Total: 3.59 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -1.26 Total: 13.60 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.28 Total: -61.55 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.19 Total: -26.40 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.34 -7.86 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053373563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.294 kcal (2) G-P(sol) polarization free energy of solvation -39.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds