Wall clock time and date at job start Fri Apr 10 2020 18:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48505 * 109.47236 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47122 * 299.99953 * 3 2 1 6 6 H 1.48501 * 109.46959 * 59.99889 * 3 2 1 7 7 C 1.38812 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00466 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.47674 * 134.45680 * 180.02562 * 9 7 2 11 11 C 1.53439 * 85.97859 * 204.31109 * 10 9 7 12 12 C 1.47670 * 134.45813 * 0.02562 * 9 7 2 13 13 C 1.52888 * 113.55703 * 222.36843 * 11 10 9 14 14 N 1.47339 * 108.05014 * 180.02562 * 13 11 10 15 15 C 1.34778 * 121.05888 * 228.41577 * 14 13 11 16 16 O 1.21282 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00383 * 179.97438 * 15 14 13 18 18 H 1.09003 * 112.84938 * 311.20229 * 17 15 14 19 19 C 1.53783 * 113.61301 * 82.50550 * 17 15 14 20 20 C 1.53779 * 87.07830 * 139.98250 * 19 17 15 21 21 C 1.53777 * 87.08313 * 334.56615 * 20 19 17 22 22 H 1.09002 * 113.61923 * 270.88313 * 21 20 19 23 23 C 1.50703 * 113.69058 * 139.99267 * 21 20 19 24 24 N 1.34782 * 120.00003 * 82.46728 * 23 21 20 25 25 O 1.21280 * 119.99987 * 262.46881 * 23 21 20 26 26 C 1.47186 * 117.90327 * 48.39611 * 14 13 11 27 27 C 1.53233 * 108.69501 * 307.78869 * 26 14 13 28 28 O 1.42493 * 113.81341 * 91.23726 * 11 10 9 29 29 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.08992 * 113.79790 * 90.04185 * 10 9 7 31 31 H 1.09004 * 113.78459 * 318.57231 * 10 9 7 32 32 H 1.09003 * 113.78718 * 41.43526 * 12 9 7 33 33 H 1.08996 * 113.79857 * 269.95919 * 12 9 7 34 34 H 1.09009 * 109.74782 * 299.66648 * 13 11 10 35 35 H 1.08998 * 109.74853 * 60.34006 * 13 11 10 36 36 H 1.08995 * 113.61373 * 254.53065 * 19 17 15 37 37 H 1.08999 * 113.61329 * 25.43385 * 19 17 15 38 38 H 1.09002 * 113.61026 * 220.01788 * 20 19 17 39 39 H 1.08999 * 113.69521 * 89.12818 * 20 19 17 40 40 H 0.96998 * 119.99463 * 359.97438 * 24 23 21 41 41 H 0.96997 * 119.99566 * 180.02562 * 24 23 21 42 42 H 1.08999 * 109.63179 * 188.01761 * 26 14 13 43 43 H 1.08998 * 109.59259 * 67.54141 * 26 14 13 44 44 H 1.09002 * 109.49338 * 294.14468 * 27 26 14 45 45 H 1.08996 * 109.49000 * 174.09128 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7212 -3.8108 -0.0019 11 6 0.3490 -4.0806 -0.6333 12 6 -0.1044 -2.7567 -0.0029 13 6 -0.3597 -5.3054 -0.0545 14 7 -1.6547 -5.4509 -0.7421 15 6 -2.7935 -5.6419 -0.0470 16 8 -2.7627 -5.6960 1.1642 17 6 -4.1052 -5.7872 -0.7747 18 1 -4.2636 -5.0087 -1.5210 19 6 -4.3638 -7.2090 -1.3004 20 6 -5.8270 -7.0181 -0.8678 21 6 -5.3079 -5.9986 0.1599 22 1 -5.0426 -6.4423 1.1195 23 6 -6.1844 -4.7808 0.3007 24 7 -7.2760 -4.8238 1.0902 25 8 -5.9076 -3.7622 -0.2964 26 6 -1.6657 -5.3806 -2.2122 27 6 -0.9452 -4.1004 -2.6482 28 8 0.3581 -4.0650 -2.0581 29 1 -0.4850 0.8400 -0.0004 30 1 1.8376 -4.2352 0.9952 31 1 2.5600 -4.0337 -0.6614 32 1 -0.7163 -2.1421 -0.6631 33 1 -0.5309 -2.8676 0.9940 34 1 0.2476 -6.1952 -0.2208 35 1 -0.5231 -5.1657 1.0141 36 1 -4.2363 -7.3058 -2.3785 37 1 -3.8403 -7.9836 -0.7400 38 1 -6.2684 -7.9067 -0.4166 39 1 -6.4581 -6.5774 -1.6396 40 1 -7.4975 -5.6387 1.5674 41 1 -7.8403 -4.0400 1.1805 42 1 -2.6950 -5.3608 -2.5703 43 1 -1.1500 -6.2484 -2.6235 44 1 -1.5167 -3.2319 -2.3205 45 1 -0.8532 -4.0867 -3.7342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053373563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:40 Heat of formation + Delta-G solvation = -57.702153 kcal Electronic energy + Delta-G solvation = -28827.185680 eV Core-core repulsion = 24846.455933 eV Total energy + Delta-G solvation = -3980.729747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12517 -41.19980 -39.89315 -38.01472 -37.72440 -35.74644 -34.63858 -34.32430 -31.60698 -29.60862 -28.73596 -27.76163 -26.92318 -26.60119 -24.66450 -23.59971 -22.41420 -21.16585 -20.35983 -19.93312 -18.96041 -18.86354 -18.19788 -17.63014 -17.50512 -17.12295 -16.82699 -16.46417 -15.97823 -15.80000 -15.58679 -15.51057 -15.24373 -15.02397 -14.87984 -14.32354 -14.01965 -13.90406 -13.81592 -13.38062 -13.07946 -12.96827 -12.88616 -12.81795 -12.53236 -12.48275 -12.15514 -11.99403 -11.94321 -11.74671 -11.46034 -11.43545 -11.02315 -10.88803 -10.84096 -10.69605 -10.63565 -9.54678 -8.99414 -7.94536 -5.30156 1.40211 1.43055 1.51919 1.53639 1.59062 1.88594 2.42503 2.61403 2.63881 3.22740 3.26600 3.31204 3.50439 3.53939 3.61781 3.72436 3.77525 3.93266 4.06392 4.14610 4.28696 4.31209 4.47706 4.58530 4.61678 4.65885 4.67205 4.70436 4.78434 4.83889 4.90223 4.93749 5.02794 5.05877 5.08311 5.19033 5.30411 5.40270 5.43554 5.83928 5.87781 6.29207 6.34647 6.45076 6.83442 7.08528 7.34179 7.54585 8.47639 9.22359 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.003681 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.826536 B = 7604.745930 C = 8580.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.073 4.073 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.635 5.635 10 C 0.136 3.864 11 C 0.078 3.922 12 C 0.151 3.849 13 C 0.108 3.892 14 N -0.611 5.611 15 C 0.521 3.479 16 O -0.584 6.584 17 C -0.126 4.126 18 H 0.117 0.883 19 C -0.106 4.106 20 C -0.101 4.101 21 C -0.123 4.123 22 H 0.126 0.874 23 C 0.519 3.481 24 N -0.835 5.835 25 O -0.597 6.597 26 C 0.082 3.918 27 C 0.037 3.963 28 O -0.360 6.360 29 H 0.246 0.754 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.004 0.996 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.419 0.581 41 H 0.405 0.595 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.022 0.978 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 -22.233 -4.989 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.265 4.265 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.108 0.892 9 N -0.361 5.361 10 C 0.011 3.989 11 C 0.036 3.964 12 C 0.024 3.976 13 C -0.016 4.016 14 N -0.344 5.344 15 C 0.311 3.689 16 O -0.465 6.465 17 C -0.147 4.147 18 H 0.135 0.865 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.145 4.145 22 H 0.144 0.856 23 C 0.304 3.696 24 N -0.398 5.398 25 O -0.477 6.477 26 C -0.040 4.040 27 C -0.040 4.040 28 O -0.278 6.278 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.251 0.749 41 H 0.236 0.764 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.041 0.959 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.699 -21.393 -4.910 25.873 hybrid contribution -0.190 1.954 1.005 2.206 sum -13.889 -19.439 -3.905 24.208 Atomic orbital electron populations 1.70081 1.06882 1.25461 1.58525 1.25743 0.96508 1.01316 1.02910 0.84919 0.78360 0.78835 0.76670 1.18263 1.21795 1.22016 1.19529 0.91009 0.83107 1.42389 0.89186 1.46207 1.02888 1.00852 1.86171 1.22720 0.94526 0.83640 0.97992 1.23193 0.97722 0.93107 0.82375 1.22487 0.87614 0.92110 0.95341 1.22015 0.84108 0.97777 0.97699 1.48276 1.06723 1.71064 1.08294 1.21095 0.85985 0.74503 0.87298 1.90635 1.87119 1.52941 1.15787 1.22832 0.89488 1.02939 0.99479 0.86521 1.22864 0.96345 0.91546 1.03563 1.22798 0.96781 0.97813 0.96409 1.22819 0.94598 0.95154 1.01931 0.85632 1.20924 0.81650 0.89307 0.77693 1.43686 1.27635 1.19553 1.48910 1.90761 1.73102 1.34912 1.48971 1.22647 1.04058 0.99021 0.78256 1.23182 0.84028 0.96627 1.00145 1.87877 1.28326 1.94393 1.17187 0.94503 0.91053 0.91156 0.94734 0.97831 0.87727 0.90248 0.87251 0.88628 0.86921 0.88646 0.74950 0.76420 0.86272 0.86973 0.95939 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.44 11.39 21.65 0.25 -63.19 16 2 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.98 48.76 29.55 68.60 2.03 50.79 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 7 C -0.23 -14.01 10.70 84.03 0.90 -13.11 16 8 H 0.09 5.10 7.83 -2.91 -0.02 5.08 16 9 N -0.63 -35.69 3.70 -729.24 -2.70 -38.39 16 10 C 0.14 5.86 8.33 86.30 0.72 6.58 16 11 C 0.08 3.21 1.21 -10.49 -0.01 3.19 16 12 C 0.15 8.19 6.65 86.31 0.57 8.76 16 13 C 0.11 3.60 5.78 86.18 0.50 4.10 16 14 N -0.61 -18.18 3.03 -817.68 -2.48 -20.65 16 15 C 0.52 16.22 7.24 87.66 0.63 16.85 16 16 O -0.58 -22.66 15.40 -3.04 -0.05 -22.71 16 17 C -0.13 -2.80 2.09 -11.01 -0.02 -2.82 16 18 H 0.12 2.87 6.50 -2.39 -0.02 2.85 16 19 C -0.11 -1.20 7.55 31.12 0.23 -0.96 16 20 C -0.10 -0.96 7.63 31.12 0.24 -0.72 16 21 C -0.12 -2.37 3.47 -11.01 -0.04 -2.41 16 22 H 0.13 2.48 7.43 -2.39 -0.02 2.46 16 23 C 0.52 12.62 7.63 87.66 0.67 13.29 16 24 N -0.83 -12.36 8.87 -173.52 -1.54 -13.90 16 25 O -0.60 -21.43 16.74 -3.03 -0.05 -21.48 16 26 C 0.08 1.82 6.51 86.33 0.56 2.38 16 27 C 0.04 1.14 6.88 72.06 0.50 1.63 16 28 O -0.36 -14.13 10.52 -148.98 -1.57 -15.70 16 29 H 0.25 15.78 8.31 -92.71 -0.77 15.00 16 30 H 0.07 2.77 8.09 -2.39 -0.02 2.75 16 31 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 32 H 0.03 2.14 6.31 -2.39 -0.02 2.12 16 33 H 0.00 0.23 7.94 -2.39 -0.02 0.21 16 34 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.08 3.02 6.91 -2.39 -0.02 3.00 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 40 H 0.42 3.00 8.83 -92.71 -0.82 2.18 16 41 H 0.40 5.59 8.93 -92.71 -0.83 4.76 16 42 H 0.12 1.99 5.80 -2.39 -0.01 1.97 16 43 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.86 7.19 -2.39 -0.02 0.84 16 45 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -93.40 362.80 -0.80 -94.20 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.61 Total: 18.26 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: 5.92 Total: 32.77 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -6.47 Total: -136.14 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -1.66 Total: -59.88 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -93.40 -0.80 -94.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053373563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.496 kcal (2) G-P(sol) polarization free energy of solvation -93.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds