Wall clock time and date at job start Fri Apr 10 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47381 * 274.81613 * 3 2 1 5 5 H 1.48505 * 109.47074 * 34.82053 * 3 2 1 6 6 H 1.48503 * 109.46888 * 154.81837 * 3 2 1 7 7 C 1.38809 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 187.58066 * 7 2 1 9 9 N 1.36935 * 120.00462 * 7.58512 * 7 2 1 10 10 C 1.47666 * 134.46607 * 187.09102 * 9 7 2 11 11 C 1.53466 * 85.98195 * 204.29268 * 10 9 7 12 12 C 1.47680 * 134.45926 * 7.07701 * 9 7 2 13 13 C 1.52888 * 113.50370 * 222.32080 * 11 10 9 14 14 N 1.47643 * 108.14302 * 276.94968 * 13 11 10 15 15 C 1.34775 * 121.24410 * 131.60306 * 14 13 11 16 16 O 1.21278 * 120.00221 * 0.12148 * 15 14 13 17 17 C 1.50707 * 119.99818 * 180.12327 * 15 14 13 18 18 C 1.52997 * 109.47041 * 179.97438 * 17 15 14 19 19 H 1.09005 * 110.21267 * 54.30898 * 18 17 15 20 20 C 1.54484 * 110.24401 * 176.22536 * 18 17 15 21 21 C 1.54630 * 101.75922 * 93.58934 * 20 18 17 22 22 C 1.51285 * 104.19899 * 24.79785 * 21 20 18 23 23 O 1.21272 * 124.94142 * 163.74595 * 22 21 20 24 24 N 1.34622 * 110.14557 * 343.77110 * 22 21 20 25 25 C 1.47121 * 117.69994 * 311.71848 * 14 13 11 26 26 C 1.53228 * 108.85333 * 52.15155 * 25 14 13 27 27 O 1.42484 * 113.76966 * 91.26905 * 11 10 9 28 28 H 0.97000 * 120.00349 * 359.97438 * 1 2 3 29 29 H 1.08994 * 113.79800 * 90.02487 * 10 9 7 30 30 H 1.09006 * 113.89631 * 318.56758 * 10 9 7 31 31 H 1.08997 * 113.78635 * 41.43826 * 12 9 7 32 32 H 1.08999 * 113.79425 * 269.97282 * 12 9 7 33 33 H 1.08997 * 109.74609 * 36.58264 * 13 11 10 34 34 H 1.09003 * 109.74065 * 157.29732 * 13 11 10 35 35 H 1.08994 * 109.46824 * 300.00086 * 17 15 14 36 36 H 1.09003 * 109.46852 * 59.99530 * 17 15 14 37 37 H 1.08992 * 110.97359 * 211.70331 * 20 18 17 38 38 H 1.08996 * 110.97130 * 335.43884 * 20 18 17 39 39 H 1.09001 * 110.48674 * 143.47980 * 21 20 18 40 40 H 1.08999 * 110.48954 * 266.11874 * 21 20 18 41 41 H 0.97001 * 124.46836 * 179.53783 * 24 22 21 42 42 H 1.08993 * 109.59819 * 292.30236 * 25 14 13 43 43 H 1.08994 * 109.59237 * 171.99522 * 25 14 13 44 44 H 1.08996 * 109.49727 * 65.76323 * 26 25 14 45 45 H 1.09003 * 109.48685 * 185.83808 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3958 2.1053 -1.3951 5 1 1.5022 2.6211 0.7995 6 1 3.5949 1.4130 0.5957 7 6 2.0103 -1.2021 -0.0005 8 1 3.0833 -1.2062 0.1229 9 7 1.3347 -2.3828 -0.1576 10 6 1.7113 -3.8085 -0.0785 11 6 0.5085 -4.0657 -0.9962 12 6 -0.0627 -2.7408 -0.4738 13 6 -0.3163 -5.2880 -0.5923 14 7 0.3342 -6.4880 -1.1548 15 6 0.5684 -7.5769 -0.3960 16 8 0.2412 -7.5840 0.7718 17 6 1.2370 -8.7857 -0.9985 18 6 1.3838 -9.8722 0.0686 19 1 0.4162 -10.0883 0.5217 20 6 1.9811 -11.1543 -0.5526 21 6 3.4912 -10.9622 -0.2808 22 6 3.5381 -10.0424 0.9194 23 8 4.5111 -9.8654 1.6212 24 7 2.3426 -9.4491 1.0959 25 6 0.7215 -6.4543 -2.5738 26 6 1.5570 -5.1955 -2.8292 27 8 0.8304 -4.0458 -2.3841 28 1 -0.4850 0.8400 0.0004 29 1 1.6037 -4.2371 0.9178 30 1 2.6724 -4.0375 -0.5388 31 1 -0.5112 -2.1192 -1.2488 32 1 -0.6979 -2.8519 0.4051 33 1 -0.3525 -5.3650 0.4944 34 1 -1.3274 -5.1975 -0.9895 35 1 0.6306 -9.1637 -1.8215 36 1 2.2227 -8.5075 -1.3714 37 1 1.6043 -12.0442 -0.0486 38 1 1.7796 -11.1997 -1.6228 39 1 3.9615 -11.9175 -0.0480 40 1 3.9768 -10.4958 -1.1380 41 1 2.1402 -8.8235 1.8090 42 1 -0.1729 -6.4319 -3.1964 43 1 1.3112 -7.3391 -2.8128 44 1 2.4972 -5.2658 -2.2824 45 1 1.7622 -5.1055 -3.8960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053470087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:53 Heat of formation + Delta-G solvation = -75.158102 kcal Electronic energy + Delta-G solvation = -28442.415037 eV Core-core repulsion = 24460.928344 eV Total energy + Delta-G solvation = -3981.486693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90177 -41.24861 -39.97013 -37.85005 -37.53135 -35.73698 -34.32703 -32.30664 -32.03149 -31.18720 -29.37319 -28.04071 -26.95638 -26.15209 -24.59915 -23.59703 -22.11353 -21.44838 -20.66320 -19.99156 -18.85471 -18.57206 -18.04096 -17.64589 -17.13590 -17.09670 -16.62958 -16.31572 -16.06502 -15.80308 -15.75163 -15.11841 -15.06658 -14.90343 -14.74508 -14.32470 -14.02966 -14.02018 -13.84526 -13.39248 -13.36318 -13.06879 -12.89979 -12.83588 -12.80991 -12.46757 -12.17967 -12.06025 -11.94788 -11.78144 -11.75796 -11.48828 -11.02607 -10.93322 -10.79887 -10.72996 -10.12690 -9.53525 -9.00586 -7.98437 -5.30970 1.41684 1.44517 1.53247 1.59020 1.63106 1.88044 2.42139 2.48646 2.66408 3.19660 3.26428 3.32728 3.50566 3.57143 3.76307 3.77075 3.87172 4.06023 4.14843 4.20614 4.28787 4.35481 4.47601 4.51640 4.54042 4.63291 4.65957 4.69164 4.71199 4.86213 4.88566 4.97426 4.99963 5.07484 5.13754 5.17155 5.24820 5.31863 5.39565 5.83451 5.86972 6.14273 6.34316 6.41722 6.84129 7.14074 7.25037 7.52082 8.46324 9.20018 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.003053 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.875791 B = 9170.590364 C = 9770.106060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.102 3.898 11 C 0.088 3.912 12 C 0.184 3.816 13 C 0.110 3.890 14 N -0.614 5.614 15 C 0.508 3.492 16 O -0.584 6.584 17 C -0.146 4.146 18 C 0.138 3.862 19 H 0.094 0.906 20 C -0.110 4.110 21 C -0.149 4.149 22 C 0.499 3.501 23 O -0.603 6.603 24 N -0.725 5.725 25 C 0.076 3.924 26 C 0.032 3.968 27 O -0.367 6.367 28 H 0.252 0.748 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.402 0.598 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.043 0.957 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -27.110 -11.333 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.357 5.357 10 C -0.023 4.023 11 C 0.046 3.954 12 C 0.058 3.942 13 C -0.015 4.015 14 N -0.347 5.347 15 C 0.299 3.701 16 O -0.464 6.464 17 C -0.186 4.186 18 C 0.033 3.967 19 H 0.112 0.888 20 C -0.147 4.147 21 C -0.189 4.189 22 C 0.287 3.713 23 O -0.485 6.485 24 N -0.377 5.377 25 C -0.045 4.045 26 C -0.045 4.045 27 O -0.285 6.285 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.240 0.760 42 H 0.115 0.885 43 H 0.157 0.843 44 H 0.062 0.938 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.018 -26.643 -10.563 28.660 hybrid contribution 0.280 1.958 1.297 2.366 sum 0.299 -24.684 -9.266 26.368 Atomic orbital electron populations 1.69996 1.06473 1.26010 1.57424 1.25675 0.96620 1.01005 1.02239 0.85017 0.77703 0.78784 0.77520 1.21009 1.21678 1.19408 1.19362 0.91073 0.83542 1.43087 0.90371 1.46224 1.07150 1.00241 1.82104 1.23115 0.97509 0.85076 0.96601 1.23058 0.94960 0.94810 0.82596 1.21972 0.87521 0.89135 0.95574 1.21919 0.96297 0.83129 1.00117 1.48419 1.59919 1.14082 1.12323 1.21508 0.77929 0.84778 0.85866 1.90682 1.54278 1.82959 1.18466 1.22376 1.03677 0.91744 1.00807 1.21671 0.93648 0.93930 0.87485 0.88798 1.22750 0.91635 0.95485 1.04858 1.22427 1.00205 1.00286 0.95958 1.22040 0.81629 0.81105 0.86488 1.90720 1.37164 1.67412 1.53182 1.46712 1.12992 1.46384 1.31600 1.22687 1.01513 1.00224 0.80104 1.23313 0.93972 0.85082 1.02110 1.87981 1.75278 1.43563 1.21727 0.93933 0.94655 0.93496 0.94160 0.94330 0.89961 0.89496 0.82627 0.86831 0.88455 0.84725 0.87075 0.85705 0.76037 0.88466 0.84299 0.93842 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 11.77 21.65 0.25 -58.85 16 2 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 3 Si 0.98 47.36 29.56 68.60 2.03 49.38 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.24 -14.46 10.68 84.03 0.90 -13.56 16 8 H 0.08 4.52 7.84 -2.91 -0.02 4.49 16 9 N -0.63 -34.65 3.69 -728.96 -2.69 -37.33 16 10 C 0.10 4.54 8.08 86.31 0.70 5.24 16 11 C 0.09 3.37 1.21 -10.49 -0.01 3.36 16 12 C 0.18 9.16 6.70 86.30 0.58 9.73 16 13 C 0.11 3.35 5.79 86.12 0.50 3.85 16 14 N -0.61 -13.45 3.04 -817.09 -2.48 -15.94 16 15 C 0.51 10.59 7.61 87.66 0.67 11.26 16 16 O -0.58 -17.32 14.54 -3.02 -0.04 -17.37 16 17 C -0.15 -1.25 3.67 29.85 0.11 -1.14 16 18 C 0.14 1.44 3.00 45.45 0.14 1.58 16 19 H 0.09 1.11 7.95 -2.38 -0.02 1.09 16 20 C -0.11 -0.30 6.70 31.65 0.21 -0.09 16 21 C -0.15 -1.31 6.86 30.59 0.21 -1.10 16 22 C 0.50 10.94 8.44 87.87 0.74 11.68 16 23 O -0.60 -20.35 18.03 -3.01 -0.05 -20.40 16 24 N -0.72 -14.38 5.51 -439.17 -2.42 -16.79 16 25 C 0.08 1.06 6.49 86.34 0.56 1.62 16 26 C 0.03 0.70 6.88 72.06 0.50 1.19 16 27 O -0.37 -13.15 10.52 -148.98 -1.57 -14.72 16 28 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.04 1.60 7.94 -2.39 -0.02 1.59 16 30 H 0.05 2.01 7.28 -2.38 -0.02 2.00 16 31 H 0.04 2.23 7.71 -2.39 -0.02 2.21 16 32 H 0.04 1.97 8.09 -2.39 -0.02 1.95 16 33 H 0.08 2.86 6.93 -2.39 -0.02 2.84 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.16 -0.07 7.96 -2.39 -0.02 -0.09 16 36 H 0.11 0.74 7.69 -2.39 -0.02 0.72 16 37 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.13 -0.62 7.87 -2.39 -0.02 -0.63 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.40 10.16 8.27 -92.71 -0.77 9.39 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.14 0.58 6.02 -2.39 -0.01 0.57 16 44 H 0.04 1.04 7.19 -2.39 -0.02 1.03 16 45 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -90.07 361.51 -0.47 -90.54 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.25 Total: 11.06 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.26 Total: 30.42 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.34 Total: -128.92 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -1.66 Total: -52.48 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -90.07 -0.47 -90.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053470087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.379 kcal (2) G-P(sol) polarization free energy of solvation -90.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds